Skip to content

Commit ebd46c3

Browse files
tsalotsalo
authored
Bookend entity sets with datatype and acquisition entities (#442)
* Order entities as requested. * Update tests, docs, and files. * Update test_bond.py * Fix.
1 parent 41c80c4 commit ebd46c3

22 files changed

+177
-165
lines changed

‎cubids/tests/data/CuBIDS_Toy_Dataset_Curation/v0_AcqGroupInfo.txt‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,3 @@
1-
1 1 ('acquisition-HASC55AP_datatype-dwi_suffix-dwi', 3) ('acquisition-v4_datatype-fmap_fmap-magnitude1_suffix-magnitude1', 1) ('acquisition-v4_datatype-fmap_fmap-magnitude2_suffix-magnitude2', 1) ('acquisition-v4_datatype-fmap_fmap-phasediff_suffix-phasediff', 1) ('datatype-anat_suffix-T1w', 1) ('datatype-fmap_direction-PA_fmap-epi_suffix-epi', 2) ('datatype-func_suffix-bold_task-rest', 2)
2-
2 1 ('acquisition-HASC55AP_datatype-dwi_suffix-dwi', 2) ('acquisition-v4_datatype-fmap_fmap-magnitude1_suffix-magnitude1', 1) ('acquisition-v4_datatype-fmap_fmap-magnitude2_suffix-magnitude2', 1) ('acquisition-v4_datatype-fmap_fmap-phasediff_suffix-phasediff', 1) ('datatype-anat_suffix-T1w', 1) ('datatype-fmap_direction-PA_fmap-epi_suffix-epi', 1)
3-
3 1 ('acquisition-HASC55AP_datatype-dwi_suffix-dwi', 1) ('acquisition-v4_datatype-fmap_fmap-magnitude1_suffix-magnitude1', 1) ('acquisition-v4_datatype-fmap_fmap-magnitude2_suffix-magnitude2', 1) ('acquisition-v4_datatype-fmap_fmap-phasediff_suffix-phasediff', 1) ('datatype-anat_suffix-T1w', 1) ('datatype-fmap_direction-PA_fmap-epi_suffix-epi', 1) ('datatype-func_suffix-bold_task-rest', 1)
1+
1 1 ('datatype-dwi_suffix-dwi_acquisition-HASC55AP', 3) ('datatype-fmap_fmap-magnitude1_suffix-magnitude1_acquisition-v4', 1) ('datatype-fmap_fmap-magnitude2_suffix-magnitude2_acquisition-v4', 1) ('datatype-fmap_fmap-phasediff_suffix-phasediff_acquisition-v4', 1) ('datatype-anat_suffix-T1w', 1) ('datatype-fmap_direction-PA_fmap-epi_suffix-epi', 2) ('datatype-func_suffix-bold_task-rest', 2)
2+
2 1 ('datatype-dwi_suffix-dwi_acquisition-HASC55AP', 2) ('datatype-fmap_fmap-magnitude1_suffix-magnitude1_acquisition-v4', 1) ('datatype-fmap_fmap-magnitude2_suffix-magnitude2_acquisition-v4', 1) ('datatype-fmap_fmap-phasediff_suffix-phasediff_acquisition-v4', 1) ('datatype-anat_suffix-T1w', 1) ('datatype-fmap_direction-PA_fmap-epi_suffix-epi', 1)
3+
3 1 ('datatype-dwi_suffix-dwi_acquisition-HASC55AP', 1) ('datatype-fmap_fmap-magnitude1_suffix-magnitude1_acquisition-v4', 1) ('datatype-fmap_fmap-magnitude2_suffix-magnitude2_acquisition-v4', 1) ('datatype-fmap_fmap-phasediff_suffix-phasediff_acquisition-v4', 1) ('datatype-anat_suffix-T1w', 1) ('datatype-fmap_direction-PA_fmap-epi_suffix-epi', 1) ('datatype-func_suffix-bold_task-rest', 1)

‎cubids/tests/data/CuBIDS_Toy_Dataset_Curation/v0_files.csv‎

Lines changed: 12 additions & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -2,18 +2,18 @@ KeyParamGroup,EntitySet,ParamGroup,Counts,Dim1Size,Dim2Size,Dim3Size,EchoTime,Ef
22
datatype-anat_suffix-T1w__1,datatype-anat_suffix-T1w,1,3,180,216,180,0.0029,,8.0,FALSE,3,anat,0,1.0,FALSE,,i-,2.5,,FALSE,1.0,1.0,1.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-01/ses-phdiff/anat/sub-01_ses-phdiff_T1w.nii.gz
33
datatype-anat_suffix-T1w__1,datatype-anat_suffix-T1w,1,3,180,216,180,0.0029,,8.0,FALSE,3,anat,0,1.0,FALSE,,i-,2.5,,FALSE,1.0,1.0,1.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-02/ses-phdiff/anat/sub-02_ses-phdiff_T1w.nii.gz
44
datatype-anat_suffix-T1w__1,datatype-anat_suffix-T1w,1,3,180,216,180,0.0029,,8.0,FALSE,3,anat,0,1.0,FALSE,,i-,2.5,,FALSE,1.0,1.0,1.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-03/ses-phdiff/anat/sub-03_ses-phdiff_T1w.nii.gz
5-
acquisition-HASC55AP_datatype-dwi_suffix-dwi__1,acquisition-HASC55AP_datatype-dwi_suffix-dwi,1,1,36,43,36,0.04,0.00069,90.0,TRUE,3,dwi,36,61.0,FALSE,,j,4.2,0.072,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-01/ses-phdiff/dwi/sub-01_ses-phdiff_acq-HASC55AP_dwi.nii.gz
6-
acquisition-HASC55AP_datatype-dwi_suffix-dwi__2,acquisition-HASC55AP_datatype-dwi_suffix-dwi,2,1,36,43,36,0.089,0.00069,,TRUE,3,dwi,36,61.0,FALSE,,j,4.2,0.072,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-02/ses-phdiff/dwi/sub-02_ses-phdiff_acq-HASC55AP_dwi.nii.gz
7-
acquisition-HASC55AP_datatype-dwi_suffix-dwi__3,acquisition-HASC55AP_datatype-dwi_suffix-dwi,3,1,36,43,36,0.089,0.00069,90.0,TRUE,3,dwi,36,61.0,FALSE,,j,4.2,0.072,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-03/ses-phdiff/dwi/sub-03_ses-phdiff_acq-HASC55AP_dwi.nii.gz
8-
acquisition-v4_datatype-fmap_fmap-magnitude1_suffix-magnitude1__1,acquisition-v4_datatype-fmap_fmap-magnitude1_suffix-magnitude1,1,3,36,43,36,0.004,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-01/ses-phdiff/fmap/sub-01_ses-phdiff_acq-v4_magnitude1.nii.gz
9-
acquisition-v4_datatype-fmap_fmap-magnitude1_suffix-magnitude1__1,acquisition-v4_datatype-fmap_fmap-magnitude1_suffix-magnitude1,1,3,36,43,36,0.004,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-02/ses-phdiff/fmap/sub-02_ses-phdiff_acq-v4_magnitude1.nii.gz
10-
acquisition-v4_datatype-fmap_fmap-magnitude1_suffix-magnitude1__1,acquisition-v4_datatype-fmap_fmap-magnitude1_suffix-magnitude1,1,3,36,43,36,0.004,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-03/ses-phdiff/fmap/sub-03_ses-phdiff_acq-v4_magnitude1.nii.gz
11-
acquisition-v4_datatype-fmap_fmap-magnitude2_suffix-magnitude2__1,acquisition-v4_datatype-fmap_fmap-magnitude2_suffix-magnitude2,1,3,36,43,36,0.006,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-01/ses-phdiff/fmap/sub-01_ses-phdiff_acq-v4_magnitude2.nii.gz
12-
acquisition-v4_datatype-fmap_fmap-magnitude2_suffix-magnitude2__1,acquisition-v4_datatype-fmap_fmap-magnitude2_suffix-magnitude2,1,3,36,43,36,0.006,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-02/ses-phdiff/fmap/sub-02_ses-phdiff_acq-v4_magnitude2.nii.gz
13-
acquisition-v4_datatype-fmap_fmap-magnitude2_suffix-magnitude2__1,acquisition-v4_datatype-fmap_fmap-magnitude2_suffix-magnitude2,1,3,36,43,36,0.006,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-03/ses-phdiff/fmap/sub-03_ses-phdiff_acq-v4_magnitude2.nii.gz
14-
acquisition-v4_datatype-fmap_fmap-phasediff_suffix-phasediff__1,acquisition-v4_datatype-fmap_fmap-phasediff_suffix-phasediff,1,3,36,43,36,,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,TRUE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-01/ses-phdiff/fmap/sub-01_ses-phdiff_acq-v4_phasediff.nii.gz
15-
acquisition-v4_datatype-fmap_fmap-phasediff_suffix-phasediff__1,acquisition-v4_datatype-fmap_fmap-phasediff_suffix-phasediff,1,3,36,43,36,,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,TRUE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-02/ses-phdiff/fmap/sub-02_ses-phdiff_acq-v4_phasediff.nii.gz
16-
acquisition-v4_datatype-fmap_fmap-phasediff_suffix-phasediff__1,acquisition-v4_datatype-fmap_fmap-phasediff_suffix-phasediff,1,3,36,43,36,,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,TRUE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-03/ses-phdiff/fmap/sub-03_ses-phdiff_acq-v4_phasediff.nii.gz
5+
datatype-dwi_suffix-dwi_acquisition-HASC55AP__1,datatype-dwi_suffix-dwi_acquisition-HASC55AP,1,1,36,43,36,0.04,0.00069,90.0,TRUE,3,dwi,36,61.0,FALSE,,j,4.2,0.072,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-01/ses-phdiff/dwi/sub-01_ses-phdiff_acq-HASC55AP_dwi.nii.gz
6+
datatype-dwi_suffix-dwi_acquisition-HASC55AP__2,datatype-dwi_suffix-dwi_acquisition-HASC55AP,2,1,36,43,36,0.089,0.00069,,TRUE,3,dwi,36,61.0,FALSE,,j,4.2,0.072,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-02/ses-phdiff/dwi/sub-02_ses-phdiff_acq-HASC55AP_dwi.nii.gz
7+
datatype-dwi_suffix-dwi_acquisition-HASC55AP__3,datatype-dwi_suffix-dwi_acquisition-HASC55AP,3,1,36,43,36,0.089,0.00069,90.0,TRUE,3,dwi,36,61.0,FALSE,,j,4.2,0.072,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-03/ses-phdiff/dwi/sub-03_ses-phdiff_acq-HASC55AP_dwi.nii.gz
8+
datatype-fmap_fmap-magnitude1_suffix-magnitude1_acquisition-v4__1,datatype-fmap_fmap-magnitude1_suffix-magnitude1_acquisition-v4,1,3,36,43,36,0.004,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-01/ses-phdiff/fmap/sub-01_ses-phdiff_acq-v4_magnitude1.nii.gz
9+
datatype-fmap_fmap-magnitude1_suffix-magnitude1_acquisition-v4__1,datatype-fmap_fmap-magnitude1_suffix-magnitude1_acquisition-v4,1,3,36,43,36,0.004,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-02/ses-phdiff/fmap/sub-02_ses-phdiff_acq-v4_magnitude1.nii.gz
10+
datatype-fmap_fmap-magnitude1_suffix-magnitude1_acquisition-v4__1,datatype-fmap_fmap-magnitude1_suffix-magnitude1_acquisition-v4,1,3,36,43,36,0.004,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-03/ses-phdiff/fmap/sub-03_ses-phdiff_acq-v4_magnitude1.nii.gz
11+
datatype-fmap_fmap-magnitude2_suffix-magnitude2_acquisition-v4__1,datatype-fmap_fmap-magnitude2_suffix-magnitude2_acquisition-v4,1,3,36,43,36,0.006,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-01/ses-phdiff/fmap/sub-01_ses-phdiff_acq-v4_magnitude2.nii.gz
12+
datatype-fmap_fmap-magnitude2_suffix-magnitude2_acquisition-v4__1,datatype-fmap_fmap-magnitude2_suffix-magnitude2_acquisition-v4,1,3,36,43,36,0.006,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-02/ses-phdiff/fmap/sub-02_ses-phdiff_acq-v4_magnitude2.nii.gz
13+
datatype-fmap_fmap-magnitude2_suffix-magnitude2_acquisition-v4__1,datatype-fmap_fmap-magnitude2_suffix-magnitude2_acquisition-v4,1,3,36,43,36,0.006,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-03/ses-phdiff/fmap/sub-03_ses-phdiff_acq-v4_magnitude2.nii.gz
14+
datatype-fmap_fmap-phasediff_suffix-phasediff_acquisition-v4__1,datatype-fmap_fmap-phasediff_suffix-phasediff_acquisition-v4,1,3,36,43,36,,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,TRUE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-01/ses-phdiff/fmap/sub-01_ses-phdiff_acq-v4_phasediff.nii.gz
15+
datatype-fmap_fmap-phasediff_suffix-phasediff_acquisition-v4__1,datatype-fmap_fmap-phasediff_suffix-phasediff_acquisition-v4,1,3,36,43,36,,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,TRUE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-02/ses-phdiff/fmap/sub-02_ses-phdiff_acq-v4_phasediff.nii.gz
16+
datatype-fmap_fmap-phasediff_suffix-phasediff_acquisition-v4__1,datatype-fmap_fmap-phasediff_suffix-phasediff_acquisition-v4,1,3,36,43,36,,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,TRUE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-03/ses-phdiff/fmap/sub-03_ses-phdiff_acq-v4_phasediff.nii.gz
1717
datatype-fmap_direction-PA_fmap-epi_suffix-epi__1,datatype-fmap_direction-PA_fmap-epi_suffix-epi,1,2,36,43,36,0.089,0.00069,90.0,FALSE,3,fmap,36,1.0,FALSE,,j-,4.2,0.072,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-01/ses-phdiff/fmap/sub-01_ses-phdiff_dir-PA_epi.nii.gz
1818
datatype-fmap_direction-PA_fmap-epi_suffix-epi__1,datatype-fmap_direction-PA_fmap-epi_suffix-epi,1,2,36,43,36,0.089,0.00069,90.0,FALSE,3,fmap,36,1.0,FALSE,,j-,4.2,0.072,FALSE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-02/ses-phdiff/fmap/sub-02_ses-phdiff_dir-PA_epi.nii.gz
1919
datatype-fmap_direction-PA_fmap-epi_suffix-epi__2,datatype-fmap_direction-PA_fmap-epi_suffix-epi,2,1,36,43,36,0.089,0.00069,90.0,FALSE,3,fmap,36,1.0,FALSE,,j-,4.2,0.072,TRUE,5.0,5.0,5.0,/Users/scovitz/BIDS_Dataset_Datalad/sub-03/ses-phdiff/fmap/sub-03_ses-phdiff_dir-PA_epi.nii.gz

‎cubids/tests/data/CuBIDS_Toy_Dataset_Curation/v0_summary.csv‎

Lines changed: 8 additions & 8 deletions
Original file line numberDiff line numberDiff line change
@@ -1,12 +1,12 @@
11
Notes,ManualCheck,MergeInto,RenameEntitySet,KeyParamGroup,EntitySet,ParamGroup,Counts,Dim1Size,Dim2Size,Dim3Size,EchoTime,EffectiveEchoSpacing,FlipAngle,HasFieldmap,EntitySetCount,Modality,NSliceTimes,NumVolumes,Obliquity,PartialFourier,PhaseEncodingDirection,RepetitionTime,TotalReadoutTime,UsedAsFieldmap,VoxelSizeDim1,VoxelSizeDim2,VoxelSizeDim3
22
,,,,datatype-anat_suffix-T1w__1,datatype-anat_suffix-T1w,1,3,180,216,180,0.0029,,8.0,FALSE,3,anat,0,1.0,FALSE,,i-,2.5,,FALSE,1.0,1.0,1.0
3-
,,,,acquisition-HASC55AP_datatype-dwi_suffix-dwi__1,acquisition-HASC55AP_datatype-dwi_suffix-dwi,1,1,36,43,36,0.04,0.00069,90.0,TRUE,3,dwi,36,61.0,FALSE,,j,4.2,0.072,FALSE,5.0,5.0,5.0
4-
,,,acquisition-HASC55APVARIANTEchoTimeFlipAngle_datatype-dwi_suffix-dwi,acquisition-HASC55AP_datatype-dwi_suffix-dwi__2,acquisition-HASC55AP_datatype-dwi_suffix-dwi,2,1,36,43,36,0.089,0.00069,,TRUE,3,dwi,36,61.0,FALSE,,j,4.2,0.072,FALSE,5.0,5.0,5.0
5-
,,,acquisition-HASC55APVARIANTEchoTime_datatype-dwi_suffix-dwi,acquisition-HASC55AP_datatype-dwi_suffix-dwi__3,acquisition-HASC55AP_datatype-dwi_suffix-dwi,3,1,36,43,36,0.089,0.00069,90.0,TRUE,3,dwi,36,61.0,FALSE,,j,4.2,0.072,FALSE,5.0,5.0,5.0
6-
,,,,acquisition-v4_datatype-fmap_fmap-magnitude1_suffix-magnitude1__1,acquisition-v4_datatype-fmap_fmap-magnitude1_suffix-magnitude1,1,3,36,43,36,0.004,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,FALSE,5.0,5.0,5.0
7-
,,,,acquisition-v4_datatype-fmap_fmap-magnitude2_suffix-magnitude2__1,acquisition-v4_datatype-fmap_fmap-magnitude2_suffix-magnitude2,1,3,36,43,36,0.006,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,FALSE,5.0,5.0,5.0
8-
,,,,acquisition-v4_datatype-fmap_fmap-phasediff_suffix-phasediff__1,acquisition-v4_datatype-fmap_fmap-phasediff_suffix-phasediff,1,3,36,43,36,,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,TRUE,5.0,5.0,5.0
3+
,,,,datatype-dwi_suffix-dwi_acquisition-HASC55AP__1,datatype-dwi_suffix-dwi_acquisition-HASC55AP,1,1,36,43,36,0.04,0.00069,90.0,TRUE,3,dwi,36,61.0,FALSE,,j,4.2,0.072,FALSE,5.0,5.0,5.0
4+
,,,datatype-dwi_suffix-dwi_acquisition-HASC55APVARIANTEchoTimeFlipAngle,datatype-dwi_suffix-dwi_acquisition-HASC55AP__2,acquisition-HASC55AP_datatype-dwi_suffix-dwi,2,1,36,43,36,0.089,0.00069,,TRUE,3,dwi,36,61.0,FALSE,,j,4.2,0.072,FALSE,5.0,5.0,5.0
5+
,,,datatype-dwi_suffix-dwi_acquisition-HASC55APVARIANTEchoTime,datatype-dwi_suffix-dwi_acquisition-HASC55AP__3,acquisition-HASC55AP_datatype-dwi_suffix-dwi,3,1,36,43,36,0.089,0.00069,90.0,TRUE,3,dwi,36,61.0,FALSE,,j,4.2,0.072,FALSE,5.0,5.0,5.0
6+
,,,,datatype-fmap_fmap-magnitude1_suffix-magnitude1__1,datatype-fmap_fmap-magnitude1_suffix-magnitude1,1,3,36,43,36,0.004,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,FALSE,5.0,5.0,5.0
7+
,,,,datatype-fmap_fmap-magnitude2_suffix-magnitude2__1,datatype-fmap_fmap-magnitude2_suffix-magnitude2,1,3,36,43,36,0.006,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,FALSE,5.0,5.0,5.0
8+
,,,,datatype-fmap_fmap-phasediff_suffix-phasediff_acquisition-v4__1,datatype-fmap_fmap-phasediff_suffix-phasediff_acquisition-v4,1,3,36,43,36,,,60.0,FALSE,3,fmap,0,1.0,FALSE,0.75,j-,1.5,,TRUE,5.0,5.0,5.0
99
,,,,datatype-fmap_direction-PA_fmap-epi_suffix-epi__1,datatype-fmap_direction-PA_fmap-epi_suffix-epi,1,2,36,43,36,0.089,0.00069,90.0,FALSE,3,fmap,36,1.0,FALSE,,j-,4.2,0.072,FALSE,5.0,5.0,5.0
10-
,,,acquisition-VARIANTIsUsed_datatype-fmap_direction-PA_fmap-epi_suffix-epi,datatype-fmap_direction-PA_fmap-epi_suffix-epi__2,datatype-fmap_direction-PA_fmap-epi_suffix-epi,2,1,36,43,36,0.089,0.00069,90.0,FALSE,3,fmap,36,1.0,FALSE,,j-,4.2,0.072,TRUE,5.0,5.0,5.0
10+
,,,datatype-fmap_direction-PA_fmap-epi_suffix-epi_acquisition-VARIANTIsUsed,datatype-fmap_direction-PA_fmap-epi_suffix-epi__2,datatype-fmap_direction-PA_fmap-epi_suffix-epi,2,1,36,43,36,0.089,0.00069,90.0,FALSE,3,fmap,36,1.0,FALSE,,j-,4.2,0.072,TRUE,5.0,5.0,5.0
1111
,,,,datatype-func_suffix-bold_task-rest__1,datatype-func_suffix-bold_task-rest,1,1,36,43,36,0.089,0.00069,90.0,FALSE,2,func,36,61.0,FALSE,,j,1.0,0.072,FALSE,5.0,5.0,5.0
12-
,,,acquisition-VARIANTNumVolumesHasFmap_datatype-func_suffix-bold_task-rest,datatype-func_suffix-bold_task-rest__2,datatype-func_suffix-bold_task-rest,2,1,36,43,36,0.089,0.00069,90.0,TRUE,2,func,36,10.0,FALSE,,j,1.0,0.072,FALSE,5.0,5.0,5.0
12+
,,,datatype-func_suffix-bold_task-rest_acquisition-VARIANTNumVolumesHasFmap,datatype-func_suffix-bold_task-rest__2,datatype-func_suffix-bold_task-rest,2,1,36,43,36,0.089,0.00069,90.0,TRUE,2,func,36,10.0,FALSE,,j,1.0,0.072,FALSE,5.0,5.0,5.0

‎cubids/tests/data/CuBIDS_Toy_Dataset_Curation/v1_AcqGroupInfo.txt‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,3 @@
1-
1 1 ('acquisition-HASC55AP_datatype-dwi_suffix-dwi', 3) ('acquisition-v4_datatype-fmap_fmap-magnitude1_suffix-magnitude1', 1) ('acquisition-v4_datatype-fmap_fmap-magnitude2_suffix-magnitude2', 1) ('acquisition-v4_datatype-fmap_fmap-phasediff_suffix-phasediff', 1) ('datatype-anat_suffix-T1w', 1) ('datatype-fmap_direction-PA_fmap-epi_suffix-epi', 2) ('datatype-func_suffix-bold_task-rest', 1)
2-
2 1 ('acquisition-HASC55AP_datatype-dwi_suffix-dwi', 2) ('acquisition-v4_datatype-fmap_fmap-magnitude1_suffix-magnitude1', 1) ('acquisition-v4_datatype-fmap_fmap-magnitude2_suffix-magnitude2', 1) ('acquisition-v4_datatype-fmap_fmap-phasediff_suffix-phasediff', 1) ('datatype-anat_suffix-T1w', 1) ('datatype-fmap_direction-PA_fmap-epi_suffix-epi', 1)
3-
3 1 ('acquisition-HASC55AP_datatype-dwi_suffix-dwi', 1) ('acquisition-v4_datatype-fmap_fmap-magnitude1_suffix-magnitude1', 1) ('acquisition-v4_datatype-fmap_fmap-magnitude2_suffix-magnitude2', 1) ('acquisition-v4_datatype-fmap_fmap-phasediff_suffix-phasediff', 1) ('datatype-anat_suffix-T1w', 1) ('datatype-fmap_direction-PA_fmap-epi_suffix-epi', 1)
1+
1 1 ('datatype-dwi_suffix-dwi_acquisition-HASC55AP', 3) ('datatype-fmap_fmap-magnitude1_suffix-magnitude1_acquisition-v4', 1) ('datatype-fmap_fmap-magnitude2_suffix-magnitude2_acquisition-v4', 1) ('datatype-fmap_fmap-phasediff_suffix-phasediff_acquisition-v4', 1) ('datatype-anat_suffix-T1w', 1) ('datatype-fmap_direction-PA_fmap-epi_suffix-epi', 2) ('datatype-func_suffix-bold_task-rest', 1)
2+
2 1 ('datatype-dwi_suffix-dwi_acquisition-HASC55AP', 2) ('datatype-fmap_fmap-magnitude1_suffix-magnitude1_acquisition-v4', 1) ('datatype-fmap_fmap-magnitude2_suffix-magnitude2_acquisition-v4', 1) ('datatype-fmap_fmap-phasediff_suffix-phasediff_acquisition-v4', 1) ('datatype-anat_suffix-T1w', 1) ('datatype-fmap_direction-PA_fmap-epi_suffix-epi', 1)
3+
3 1 ('datatype-dwi_suffix-dwi_acquisition-HASC55AP', 1) ('datatype-fmap_fmap-magnitude1_suffix-magnitude1_acquisition-v4', 1) ('datatype-fmap_fmap-magnitude2_suffix-magnitude2_acquisition-v4', 1) ('datatype-fmap_fmap-phasediff_suffix-phasediff_acquisition-v4', 1) ('datatype-anat_suffix-T1w', 1) ('datatype-fmap_direction-PA_fmap-epi_suffix-epi', 1) ('datatype-func_suffix-bold_task-rest', 1)

0 commit comments

Comments
 (0)