Work on workflow graphs more.

tsalo · tsalo · commit eede40e78441 · 2026-02-12T10:28:44.000-05:00
diff --git a/xcp_d/workflows/base.py b/xcp_d/workflows/base.py
@@ -116,7 +116,7 @@ def init_single_subject_wf(subject_id: str, anat_session: str, func_sessions: li
             from xcp_d.workflows.base import init_single_subject_wf
 
             with mock_config():
-                wf = init_single_subject_wf("01", "01", ["01"])
+                wf = init_single_subject_wf("01", "", [""])
 
     Parameters
     ----------
diff --git a/xcp_d/workflows/bold/cifti.py b/xcp_d/workflows/bold/cifti.py
@@ -65,8 +65,9 @@ def init_postprocess_cifti_wf(
                     layout=layout,
                     bold_file=bold_file,
                     file_format="cifti",
-                    target_space="fsLR",
+                    target_space="MNI152NLin2009cAsym",
                 )
+                run_data['confounds'] = None
 
                 from xcp_d.utils.utils import _create_mem_gb
 
diff --git a/xcp_d/workflows/bold/nifti.py b/xcp_d/workflows/bold/nifti.py
@@ -70,6 +70,7 @@ def init_postprocess_nifti_wf(
                     file_format="nifti",
                     target_space="MNI152NLin2009cAsym",
                 )
+                run_data['confounds'] = None
 
                 from xcp_d.utils.utils import _create_mem_gb
 
diff --git a/xcp_d/workflows/bold/plotting.py b/xcp_d/workflows/bold/plotting.py
@@ -46,7 +46,7 @@ def init_qc_report_wf(
                 wf = init_qc_report_wf(
                     TR=0.5,
                     head_radius=50,
-                    mem_gb={"bold": 1.0},
+                    mem_gb={"bold": 1.0, "volume": 0.1},
                     name="qc_report_wf",
                 )
 

Original file line number	Diff line number	Diff line change
`@@ -65,8 +65,9 @@ def init_postprocess_cifti_wf(`
`65`	`65`	`layout=layout,`
`66`	`66`	`bold_file=bold_file,`
`67`	`67`	`file_format="cifti",`
`68`		`- target_space="fsLR",`
	`68`	`+ target_space="MNI152NLin2009cAsym",`
`69`	`69`	`)`
	`70`	`+ run_data['confounds'] = None`
`70`	`71`
`71`	`72`	`from xcp_d.utils.utils import _create_mem_gb`
`72`	`73`
Original file line number	Diff line number	Diff line change
`@@ -70,6 +70,7 @@ def init_postprocess_nifti_wf(`
`70`	`70`	`file_format="nifti",`
`71`	`71`	`target_space="MNI152NLin2009cAsym",`
`72`	`72`	`)`
	`73`	`+ run_data['confounds'] = None`
`73`	`74`
`74`	`75`	`from xcp_d.utils.utils import _create_mem_gb`
`75`	`76`
Original file line number	Diff line number	Diff line change
`@@ -46,7 +46,7 @@ def init_qc_report_wf(`
`46`	`46`	`wf = init_qc_report_wf(`
`47`	`47`	`TR=0.5,`
`48`	`48`	`head_radius=50,`
`49`		`- mem_gb={"bold": 1.0},`
	`49`	`+ mem_gb={"bold": 1.0, "volume": 0.1},`
`50`	`50`	`name="qc_report_wf",`
`51`	`51`	`)`
`52`	`52`