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markwoonmarkwoon
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build(data): add additional validation checks
1 parent 8c85b47 commit 2a45bae

32 files changed

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‎docs/examples/pharmcat.example.match.html‎

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‎docs/examples/pharmcat.example.match.json‎

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‎docs/examples/pharmcat.example.phenotype.json‎

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"namedAlleleMatcherVersion": "2.0.0",
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"genomeBuild": "GRCh38.p14",
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"inputFilename": "pharmcat.example.vcf",
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"timestamp": "2025-11-03T21:02:46.907Z",
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"timestamp": "2025-11-04T00:53:50.012Z",
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"topCandidatesOnly": true,
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"findCombinations": false,
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"callCyp2d": false,
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"activityValue": "n/a"
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},
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"gene": "ABCG2",
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"matchScore": 2,
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"matchScore": 4,
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"phenotypes": [
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"Normal Function"
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],
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"activityValue": "n/a"
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},
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"gene": "ABCG2",
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"matchScore": 2,
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"matchScore": 4,
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"phenotypes": [
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"Normal Function"
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],
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"activityValue": "n/a"
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},
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"gene": "CACNA1S",
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"matchScore": 4,
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"matchScore": 8,
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"phenotypes": [
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"Uncertain Susceptibility"
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],
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"activityValue": "n/a"
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},
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"gene": "CACNA1S",
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"matchScore": 4,
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"matchScore": 8,
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"phenotypes": [
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"Uncertain Susceptibility"
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],
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"activityValue": "n/a"
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},
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"gene": "CFTR",
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"matchScore": 186,
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"matchScore": 372,
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"phenotypes": [
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"ivacaftor non-responsive in CF patients"
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],
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"activityValue": "n/a"
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},
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"gene": "CFTR",
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"matchScore": 186,
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"matchScore": 372,
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"phenotypes": [
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"ivacaftor non-responsive in CF patients"
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],
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"activityValue": "n/a"
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},
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"gene": "CYP2B6",
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"matchScore": 96,
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"matchScore": 192,
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"phenotypes": [
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"Normal Metabolizer"
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],
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"activityValue": "n/a"
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},
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"gene": "CYP2B6",
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"matchScore": 96,
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"matchScore": 192,
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"phenotypes": [
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"Normal Metabolizer"
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],
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"activityValue": "n/a"
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},
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"gene": "CYP2C19",
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"matchScore": 70,
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"matchScore": 140,
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"phenotypes": [
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"Normal Metabolizer"
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],
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"activityValue": "n/a"
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},
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"gene": "CYP2C19",
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"matchScore": 70,
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"matchScore": 140,
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"phenotypes": [
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"Normal Metabolizer"
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],
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"activityValue": "1.0"
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},
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"gene": "CYP2C9",
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"matchScore": 166,
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"matchScore": 332,
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"phenotypes": [
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"Normal Metabolizer"
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],
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"activityValue": "1.0"
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},
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"gene": "CYP2C9",
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"matchScore": 166,
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"matchScore": 332,
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"phenotypes": [
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"Normal Metabolizer"
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],
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"activityValue": "n/a"
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},
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"gene": "CYP3A4",
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"matchScore": 84,
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"matchScore": 168,
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"phenotypes": [
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"Normal Metabolizer"
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],
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"activityValue": "n/a"
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},
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"gene": "CYP3A4",
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"matchScore": 84,
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"matchScore": 168,
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"phenotypes": [
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"Normal Metabolizer"
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"activityValue": "n/a"
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},
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"gene": "CYP3A5",
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"matchScore": 10,
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"matchScore": 20,
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"phenotypes": [
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"Normal Metabolizer"
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"activityValue": "n/a"
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},
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"gene": "CYP3A5",
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"matchScore": 10,
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"matchScore": 20,
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"phenotypes": [
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"Normal Metabolizer"
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"activityValue": null
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},
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"gene": "CYP4F2",
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"matchScore": 40,
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"matchScore": 80,
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"phenotypes": [],
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"outsidePhenotype": false,
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"outsidePhenotypeMismatch": null,
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"activityValue": null
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},
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"gene": "CYP4F2",
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"matchScore": 40,
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"matchScore": 80,
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"phenotypes": [],
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"outsidePhenotype": false,
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"outsidePhenotypeMismatch": null,
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"activityValue": "1.0"
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},
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"gene": "DPYD",
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"matchScore": 166,
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"matchScore": 332,
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"phenotypes": [
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"Normal Metabolizer"
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],
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},
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"allele2": null,
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"gene": "DPYD",
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"matchScore": 83,
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"matchScore": 166,
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"phenotypes": [
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"Indeterminate"
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],
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"activityValue": "1.0"
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},
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"gene": "DPYD",
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"matchScore": 166,
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"matchScore": 332,
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"phenotypes": [
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"Normal Metabolizer"
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],
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"activityValue": "n/a"
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},
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"gene": "G6PD",
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"matchScore": 342,
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"matchScore": 684,
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"phenotypes": [
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"Normal"
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],
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"activityValue": "n/a"
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},
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"gene": "G6PD",
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"matchScore": 342,
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"matchScore": 684,
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"phenotypes": [
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"Normal"
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],
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"activityValue": "n/a"
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},
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"gene": "IFNL3",
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"matchScore": 2,
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"matchScore": 4,
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"phenotypes": [
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"n/a"
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"activityValue": "n/a"
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},
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"gene": "IFNL3",
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"matchScore": 2,
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"matchScore": 4,
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"phenotypes": [
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"activityValue": "n/a"
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},
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"gene": "NAT2",
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"matchScore": 94,
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"matchScore": 188,
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"phenotypes": [
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"Rapid Metabolizer"
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],
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"activityValue": "n/a"
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},
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"gene": "NAT2",
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"matchScore": 94,
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"matchScore": 188,
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"phenotypes": [
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"Rapid Metabolizer"
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"activityValue": "n/a"
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},
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"gene": "NUDT15",
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"matchScore": 36,
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"matchScore": 72,
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"phenotypes": [
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"Normal Metabolizer"
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"activityValue": "n/a"
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},
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"gene": "NUDT15",
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"matchScore": 36,
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"matchScore": 72,
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"phenotypes": [
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"Normal Metabolizer"
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"activityValue": "n/a"
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},
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"gene": "RYR1",
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"matchScore": 626,
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"matchScore": 1252,
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"phenotypes": [
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"Uncertain Susceptibility"
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},
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"allele2": null,
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"gene": "RYR1",
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"matchScore": 313,
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"matchScore": 626,
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"phenotypes": [
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"n/a"
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"activityValue": "n/a"
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},
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"gene": "RYR1",
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"matchScore": 626,
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"matchScore": 1252,
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"phenotypes": [
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"Uncertain Susceptibility"
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"activityValue": "n/a"
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},
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"gene": "SLCO1B1",
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"matchScore": 140,
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"matchScore": 210,
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"phenotypes": [
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"Normal Function"
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"activityValue": "n/a"
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},
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"gene": "SLCO1B1",
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"matchScore": 210,
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"Normal Function"
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"activityValue": "n/a"
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},
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"gene": "TPMT",
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"matchScore": 86,
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"matchScore": 172,
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"phenotypes": [
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"activityValue": "n/a"
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"gene": "TPMT",
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"matchScore": 172,
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"phenotypes": [
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"activityValue": "n/a"
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},
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"gene": "UGT1A1",
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"matchScore": 16,
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"phenotypes": [
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"activityValue": "n/a"
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"gene": "UGT1A1",
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"phenotypes": [
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"activityValue": "n/a"
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},
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"gene": "VKORC1",
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"matchScore": 2,
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"matchScore": 4,
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"phenotypes": [
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"-1639 GG"
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"activityValue": "n/a"
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"gene": "VKORC1",
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"matchScore": 2,
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"matchScore": 4,
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"phenotypes": [
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"-1639 GG"
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],

‎docs/examples/pharmcat.example.report.html‎

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<div class="metadata">
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<table>
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<tr><th>Date created</th><td>November 03, 2025</td></tr>
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<tr><th>PharmCAT Version</th><td>v3.0.1-76-g31de8e7d</td></tr>
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<tr><th>PharmCAT Version</th><td>v3.0.1-75-g8c85b474</td></tr>
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<tr><th>Data Version</th><td>2025-11-03-12-41</td></tr>
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</table>
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</div>

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