Merge pull request #210 from PhysiCell-Tools/development

fix secretion_target bug

Author: rheiland

VERSION.txt

@@ -1 +1 @@
-2.37.5
+2.37.6

bin/cell_def_tab.py

@@ -6752,7 +6752,7 @@ def add_new_substrate(self, sub_name):  # called for both "New" and "Copy" of su
             # initialize secretion params
             self.param_d[cdname]["secretion"][sub_name] = {}
             self.param_d[cdname]["secretion"][sub_name]["secretion_rate"] = sval
-            self.param_d[cdname]["secretion"][sub_name]["secretion_target"] = 1.0
+            self.param_d[cdname]["secretion"][sub_name]["secretion_target"] = "1.0"
             self.param_d[cdname]["secretion"][sub_name]["uptake_rate"] = sval
             self.param_d[cdname]["secretion"][sub_name]["net_export_rate"] = sval
 

bin/studio.py

@@ -190,8 +190,17 @@ def __init__(self, config_file, studio_flag, skip_validate_flag, rules_flag, mod
         self.config_file = self.current_xml_file  # to Save
         print(f"studio: (default) self.config_file = {self.config_file}")
 
-        self.tree = ET.parse(self.config_file)
-        print(f"studio: (default) self.tree = {self.tree}")
+        try:
+            self.tree = ET.parse(self.config_file)
+            print(f"studio: (default) self.tree = {self.tree}")
+        except:
+            msgBox = QMessageBox()
+            msgBox.setText(f'Error parsing the {self.config_file} Please check it for correctness.')
+            msgBox.setStandardButtons(QMessageBox.Ok)
+            returnValue = msgBox.exec()
+            print(f'\nError parsing the {self.config_file} Please check it for correctness.')
+            sys.exit(-1)
+
         self.xml_root = self.tree.getroot()
         print(f"studio: (default) self.xml_root = {self.xml_root}")   #rwh