Merge pull request #279 from PhysiCell-Tools/development

update for refactor

Author: rheiland

bin/studio_ecm.py

@@ -258,7 +258,7 @@ def __init__(self, config_file, studio_flag, skip_validate_flag, rules_flag, mod
 
         # self.tab2.tree.setCurrentItem(QTreeWidgetItem,0)  # item
 
-        self.celldef_tab = CellDef(self.pytest_flag)
+        self.celldef_tab = CellDef(self)
         self.celldef_tab.xml_root = self.xml_root
         if is_movable_flag:
             self.celldef_tab.is_movable_w.setEnabled(True)
@@ -283,7 +283,7 @@ def __init__(self, config_file, studio_flag, skip_validate_flag, rules_flag, mod
 
         self.microenv_tab.celldef_tab = self.celldef_tab
 
-        self.user_params_tab = UserParams()
+        self.user_params_tab = UserParams(self)
         self.user_params_tab.xml_root = self.xml_root
         self.user_params_tab.fill_gui()
 
@@ -342,7 +342,10 @@ def __init__(self, config_file, studio_flag, skip_validate_flag, rules_flag, mod
         if self.studio_flag:
             logging.debug(f'studio.py: creating ICs, Run, and Plot tabs')
             self.ics_tab = ICs(self.config_tab, self.celldef_tab, self.biwt_flag)
+            self.config_tab.ics_tab = self.ics_tab
+            self.microenv_tab.ics_tab = self.ics_tab
             self.ics_tab.fill_celltype_combobox()
+            self.ics_tab.fill_substrate_combobox()
             self.ics_tab.reset_info()
 
             if self.nanohub_flag:  # rwh - test if works on nanoHUB