bump version

Author: CamDavidsonPilon

CHANGELOG.md

@@ -1,3 +1,21 @@
+### 25.3.31
+
+#### Enhancements
+
+- **Support for Pioreactor 40mL**
+  - UI and backend now accommodates the new Pioreactor 40mL. Change the Pioreactor model on the Inventory page.
+- **Device models and versions now tracked in the database**
+  - Models and versions for each Pioreactor are now stored in the `worker` table.
+  We're deprecating the `[pioreactor]` section in `config.ini`. You can manage models and versions on the **Inventory** page.
+- **Improvements to dosing automation settings**:
+  - When starting a dosing automation, you can set the initial and max culture volumes.
+
+#### Bug Fixes
+
+- Fixed occasional crash on the **Overview** page in the UI.
+- UI page `/pioreactors/<some_unit>` now uses that unit's specific configuration from `config_<some_unit>.ini`.
+
+
 ### 25.3.5
 
  - Fix for updating across cluster and leader saying it failed

pioreactorui/api.py

@@ -203,13 +203,10 @@ def run_job_on_unit_in_experiment(
             (experiment, pioreactor_unit),
             one=True,
         )
-        assert isinstance(worker, dict)
         if worker is None:
             assigned_workers = []
         else:
-            assigned_workers = [worker]
-
-    assert isinstance(assigned_workers, list)
+            assigned_workers = [worker]  # type: ignore
 
     if len(assigned_workers) == 0:
         abort(404, f"Worker(s) {pioreactor_unit} not found or not active.")

pioreactorui/version.py

@@ -3,4 +3,4 @@
 
 
 # pioreactorui version
-__version__ = "25.3.5"
+__version__ = "25.3.31"

tests/example_data.sql

@@ -4,11 +4,11 @@ INSERT INTO experiments (experiment, created_at, description, media_used, organi
 ('exp2', '2023-10-02T15:00:00Z', 'Second experiment', 'Minimal media', 'Yeast'),
 ('exp3', '2023-10-03T09:00:00Z', 'Third experiment', 'Rich media', 'Bacteria');
 
-INSERT INTO workers (pioreactor_unit, added_at, is_active) VALUES
-('unit1', '2023-10-01T10:00:00Z', 1),
-('unit2', '2023-10-01T11:00:00Z', 1),
-('unit3', '2023-10-02T10:00:00Z', 1),
-('unit4', '2023-10-03T08:00:00Z', 0);
+INSERT INTO workers (pioreactor_unit, added_at, is_active, model_name, model_version) VALUES
+('unit1', '2023-10-01T10:00:00Z', 1, "pioreactor_20ml", "1.1"),
+('unit2', '2023-10-01T11:00:00Z', 1, "pioreactor_40ml", "1.0"),
+('unit3', '2023-10-02T10:00:00Z', 1, "pioreactor_40ml", "1.0"),
+('unit4', '2023-10-03T08:00:00Z', 0, "pioreactor_40ml", "1.0");
 
 INSERT INTO experiment_worker_assignments (pioreactor_unit, experiment, assigned_at) VALUES
 ('unit1', 'exp1', '2023-10-01T12:00:00Z'),

tests/test_app.py

@@ -281,7 +281,12 @@ def test_broadcast_in_manage_all(client):
     assert bucket[0].json == {
         "args": [],
         "options": {"target_rpm": 10},
-        "env": {"EXPERIMENT": "exp1", "ACTIVE": "1"},
+        "env": {
+            "EXPERIMENT": "exp1",
+            "ACTIVE": "1",
+            "MODEL_NAME": "pioreactor_20ml",
+            "MODEL_VERSION": "1.1",
+        },
     }
 
     # Remove unit2 from exp1
@@ -304,7 +309,12 @@ def test_run_job(client):
     assert bucket[0].json == {
         "args": [],
         "options": {"target_rpm": 10},
-        "env": {"EXPERIMENT": "exp1", "ACTIVE": "1"},
+        "env": {
+            "EXPERIMENT": "exp1",
+            "ACTIVE": "1",
+            "MODEL_NAME": "pioreactor_20ml",
+            "MODEL_VERSION": "1.1",
+        },
     }
 
     # wrong experiment!
@@ -336,7 +346,13 @@ def test_run_job_with_job_source(client):
     assert bucket[0].json == {
         "args": [],
         "options": {"target_rpm": 10},
-        "env": {"EXPERIMENT": "exp1", "ACTIVE": "1", "JOB_SOURCE": "experiment_profile"},
+        "env": {
+            "EXPERIMENT": "exp1",
+            "ACTIVE": "1",
+            "JOB_SOURCE": "experiment_profile",
+            "MODEL_NAME": "pioreactor_20ml",
+            "MODEL_VERSION": "1.1",
+        },
     }