renaming some datasets and charts for new raw ods

Author: CamDavidsonPilon

contrib/charts/05_od.yaml

@@ -1,5 +1,5 @@
 ---
-chart_key: raw_optical_density
+chart_key: optical_density
 data_source: od_readings # SQL table
 title: Optical density
 mqtt_topic: [od_reading/od1, od_reading/od2]

contrib/charts/09_raw_od.yaml

@@ -0,0 +1,13 @@
+---
+chart_key: raw_optical_density
+data_source: raw_od_readings # SQL table
+title: Raw optical density (uncalibrated)
+mqtt_topic: [od_reading/raw_od1, od_reading/raw_od2]
+source: app
+payload_key: od
+y_axis_label: Reading
+interpolation: stepAfter
+lookback: parseFloat(config['ui.overview.settings']['raw_od_lookback_hours'])
+fixed_decimals: 3
+y_axis_domain: [0.001, 0.05] # good default for near 0 OD, but will break out after growth.
+down_sample: true

pioreactorui/api.py

@@ -1446,6 +1446,28 @@ def get_experiment(experiment: str) -> ResponseReturnValue:
 ## CONFIG CONTROL
 
 
+@api.route("/unit/<pioreactor_unit>/configuration", methods=["GET"])
+def get_configuration_for_pioreactor_unit(pioreactor_unit: str) -> ResponseReturnValue:
+    """get configuration for a pioreactor unit"""
+    try:
+        if is_testing_env():
+            global_config_path = Path(env["DOT_PIOREACTOR"]) / "config.dev.ini"
+        else:
+            global_config_path = Path(env["DOT_PIOREACTOR"]) / "config.ini"
+
+        specific_config_path = Path(env["DOT_PIOREACTOR"]) / f"config_{pioreactor_unit}.ini"
+
+        config_files = [global_config_path, specific_config_path]
+        config = configparser.ConfigParser(strict=False)
+        config.read(config_files)
+
+        return {section: dict(config[section]) for section in config.sections()}
+
+    except Exception as e:
+        publish_to_error_log(str(e), "get_configuration_for_pioreactor_unit")
+        abort(400)
+
+
 @api.route("/configs/<filename>", methods=["GET"])
 def get_config(filename: str) -> ResponseReturnValue:
     """get a specific config.ini file in the .pioreactor folder"""