Release/v0.8.0 (#76)

* docs/README-Add-link-to-VS-Code-extension (#35)

* Fix/readme (#36)

* fix readme

* bump version

* Feature/docs fixes and cleanups (#40)

* Add docs for github commands

* swe_from_file_cmd  use PipeCode the same way as swe_from_repo_cmd
added some pipe codes to enum

* Renamed write_changelog_v2 to write_changelog_enhanced

* Rename check_docs_consistency to check_doc_inconsistencies

* fix/cursor_rules (#41)

* fix/cursor_rules

* fix rules

* Better-extension-and-Blackbox-support (#42)

* Feature/more GitHub power (#44)

* Split CLI code of all commands:

### Changed
- **Major CLI restructuring**: Reorganized flat command structure into logical command groups for better organization and maintainability
  - `repox` → `repox convert` (repository processing commands)
  - `swe-*` commands → `swe *` subcommands (e.g., `swe-from-repo` → `swe from-repo`)
  - `validate` → `validation validate` (with additional `validation dry-run` and `validation check-config` options)
- **Improved CLI architecture**: Extracted command implementations from main CLI module into co-located packages (`cocode/repox/repox_cli.py`, `cocode/swe/swe_cli.py`, etc.) for better code organization
- **Updated documentation**: All examples and references updated to reflect new command structure

### Added
- Command group structure with `app.add_typer()` for better CLI organization
- `cocode/common.py` module with shared utilities (`PipeCode` enum, `validate_repo_path()`, `get_output_dir()`)
- Alternative command names for flexibility (e.g., `repox repo` alongside `repox convert`)

### Deprecated
- Direct `cocode validate` command (still works but shows deprecation notice; use `cocode validation validate` instead)

**Migration**: Replace hyphens with spaces in SWE commands (e.g., `swe-from-repo` → `swe from-repo`) and use `repox convert` instead of `repox`. All old functionality remains available in the new structure.

* use github repos with temp clones

* Fix linting

* Cleanup imports

* Lint format

* Adapt to New inference backend config (#48)


- Bump `pipelex` to `v0.10.2`: See `Pipelex` changelog [here](https://docs.pipelex.com/changelog/)

* Last step to remove redundancies in finalized changelog (#50)

* fix/clean cli commands (#51)

* fix/clean cli commands

* update changelog

* remove blackbox

* Fix/clean cli commands (#53)

* Feature/new cmd analyze (#55)

* Duplicate changelog as analyze

* cli to Analyze

* Last step to remove redundancies in finalized changelog (#56)

* Refactor/move pipelines (#57)

* refactor/For Pipelex 0.11.x

* WIP update Pipelex

* Update config and libraries

* Ignore patterns OK

* Rename ignore_patterns to  exclude_patterns

* Cleanup dependencies

* Move pipelines

* Adapt to Pipelex

* Pipelex deb dev

* Restore gemini via Pipelex inference

* Adapt to pipelex new syntax for multiplicity (#59)

* Adapt to pipelex new syntax for multiplicity

* Adapt more details

* Agent rules

* Improve changelog pipeline and Bump Pipelex (#60)

* Fix/changelog duplicate bundles (#63)

* Fix dupe biundles

* - Upgraded `pipelex` dependency from to `0.15.2`

* Feature/check is initialized (#65)

* Before tests, check_is_initialized

* update pipelex and pytest

* cleanup imports

* Pin pipelex to released 0.31.0 and bump pyright to 1.1.410 (#72)

* Use Pipelex Gateway (local dep)

* PLX fixes related to new checks

* Update for Pipelex

* Use feature/Chicago

* Pipelex dep

* Cleanup imports

* CI --disable-inference to run without Pipelex Service agreement
+ cleaned up agent rules

* Use Chicago b2

* Rename .plx to .mthds, reorganize inference deck, and remove redundant AI instruction files

Migrate pipeline files from .plx to .mthds extension, restructure the inference deck into separate files (llm, img_gen, extract, custom), update backend configs, and consolidate AI coding instructions into CLAUDE.md by removing .blackboxrules, .cursor/rules, .windsurfrules.md, AGENTS.md, and .github/copilot-instructions.md.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* Fix NameError in changelog_struct by using builtin list type

Replace typing.List with builtin list[str] and remove unnecessary
from __future__ import annotations to fix annotation resolution
failure after pipelex update.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* Update pipelex dependency to feature/Chicago branch

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* Update stuff

* Consume pipelex public validation API in validation CLI and tests

Replace the hand-rolled load_all_pipeline_libraries / dry_run_all_pipes
helpers with pipelex's new public composers: load_libraries_and_activate
(the open/set/load ceremony) and BundleValidator.validate_current_library
(no-teardown sweep of the active library). Rewire the validation CLI
commands, the test conftest (both the inference and --disable-inference
branches), and the test_basic dry-run smoke test. Update the conftest
disable-inference branch to the current Pipelex.make(needs_inference=False)
API in place of the removed disable_inference kwarg.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* Enhance model deck configurations and add runtime trace ignore patterns

* Pin pipelex to released 0.31.0 and bump pyright to 1.1.410

Switch the pipelex dependency from the local editable ../pipelex source to the published 0.31.0 release on PyPI and drop the [tool.uv.sources] override. Raise the pyright dev floor to 1.1.410 and regenerate uv.lock accordingly.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* Replace removed llm_for_large_codebase preset and tidy test bootstrap

Point doc_proofread and text_utils pipes at the engineering-codebase-analysis
preset (the old llm_for_large_codebase alias was removed with base_deck.toml
under pipelex 0.31). Also align test fixtures on PIPELINE_LIBRARY_DIRS_FOR_TESTS,
bump best-gemini to gemini-pro-latest, and drop the stale hello_world xfail.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Louis Choquel <8851983+lchoquel@users.noreply.github.com>
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>

* chore: track pipelex keyword-only refactor + migrate to PipelexMTHDSProtocol (#75)

* chore: track pipelex keyword-only refactor + migrate to PipelexMTHDSProtocol

Pin pipelex to the keyword-only-arguments refactor branch (git rev) and
migrate the SWE runner off the removed PipelexRunner class.

- pyproject/uv.lock: pipelex ==0.32.1 -> ==0.33.0 via git rev 529b9082
- swe_cmd.py + integration test: PipelexRunner -> PipelexMTHDSProtocol,
  execute_pipeline() -> execute() (response.pipe_output unchanged)

make agent-check and agent-test pass; uv lock --check is consistent.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore: bump pinned pipelex rev to 755b8211 (keyword-only arg reorderings)

Tracks the latest pipelex keyword-only refactor commit, which reorders several
function signatures to keyword-only. No call-site changes needed here — every
call site already passes the affected args by keyword. agent-check + agent-test green.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* chore: re-pin pipelex to 0e32c8c0 (positional-subject consolidation)

Bumps the pinned pipelex git rev 755b8211 -> 0e32c8c0. That commit makes
all remaining non-subject params keyword-only (no reordering); all call
sites here already pass by keyword, so this is a no-op bump. agent-check +
agent-test green.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

* Refactor configuration and update dependencies

- Removed experimental feature flags from pipelex.toml.
- Updated VSCode settings to enable format on save and organize imports.
- Cleaned up ai_instruction_update.mthds by removing combined_output.
- Adjusted changelog.mthds template formatting for consistency.
- Removed combined_output from swe_docs.mthds.
- Renamed TestingStrategyDoc to TestStrategyDoc in swe_docs.py and updated references.
- Updated pipelex.toml to remove pipeline tracking and reporting flags.
- Specified exact version for ruff in pyproject.toml and updated dependencies.
- Updated uv.lock to reflect changes in package versions and sources.

* use pipelex from pypi

---------

Co-authored-by: Louis Choquel <8851983+lchoquel@users.noreply.github.com>
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* Release v0.8.0

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01CofmZexDhCrSnqmwsdAGWm

---------

Co-authored-by: Thomas Hebrard <thomas@pipelex.com>
Co-authored-by: Louis Choquel <8851983+lchoquel@users.noreply.github.com>
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>

Author: 3 people

.pipelex/pipelex.toml

@@ -140,14 +140,6 @@ console_print_target = "stdout"
 # Log levels for specific packages (use "-" instead of "." in package names)
 pipelex = "INFO"
 
-####################################################################################################
-# Feature Config
-####################################################################################################
-
-[pipelex.feature_config]
-# WIP/Experimental feature flags
-is_reporting_enabled = true
-
 ####################################################################################################
 # Reporting Config
 ####################################################################################################

.vscode/settings.json

@@ -1,13 +1,18 @@
 {
+    "python.defaultInterpreterPath": "${workspaceFolder}/.venv/bin/python",
     "[python]": {
-        "editor.defaultFormatter": "charliermarsh.ruff"
+        "editor.defaultFormatter": "charliermarsh.ruff",
+        "editor.formatOnSave": true,
+        "editor.codeActionsOnSave": {
+            "source.organizeImports": "explicit",
+            "source.fixAll": "explicit"
+        }
     },
     "ruff.configuration": "--config=pyproject.toml",
     "mypy.enabled": true,
     "mypy.runUsingActiveInterpreter": true,
     "search.exclude": {
         ".mypy_cache/*": true,
-        "**/dev_context": true
     },
     "files.exclude": {
         "**/__pycache__": true,

CHANGELOG.md

@@ -1,5 +1,22 @@
 # Changelog
 
+## [v0.8.0] - 2026-07-06
+
+### Added
+- **Editor:** Added VS Code workspace settings (`.vscode/settings.json`) to auto-format code and organize imports on save via Ruff, and set the default Python interpreter.
+
+### Changed
+- **Dependencies:** Upgraded `pipelex` to `0.37.0` (enforces keyword-only arguments across the public API) and pinned `ruff` to `0.14.13`.
+- **Core:** Migrated the SWE pipeline runner to the new MTHDS Protocol, replacing `PipelexRunner`/`execute_pipeline()` with `PipelexMTHDSProtocol`/`execute()` across `swe_cmd.py` and integration tests.
+- **Pipelines:** Renamed `TestingStrategyDoc` to `TestStrategyDoc` and its `testing_strategy` field to `test_strategy` in the `swe_docs` pipeline schema.
+
+### Fixed
+- **Pipelines:** Corrected markdown list formatting in the `swe_diff/changelog.mthds` template by removing an errant leading space.
+
+### Removed
+- **Config:** Removed the experimental `[pipelex.feature_config]` section and its flags (`is_reporting_enabled`, `is_pipeline_tracking_enabled`) from `pipelex.toml` files.
+- **Pipelines:** Removed `combined_output` definitions from the `ai_instruction_update.mthds` and `swe_docs.mthds` pipelines.
+
 ## [v0.7.1] - 2026-06-09
 
 ### Changed

cocode/pipelines/doc_update/ai_instruction_update.mthds

@@ -282,7 +282,6 @@ branches = [
   { pipe = "analyze_claude_md_changes", result = "claude_analysis" },
   { pipe = "analyze_cursor_rules_changes", result = "cursor_analysis" },
 ]
-combined_output = "ai_instruction_update.AIInstructionParallelResults"
 
 [pipe.ai_instruction_update]
 type = "PipeSequence"

cocode/pipelines/swe_diff/changelog.mthds

@@ -46,42 +46,42 @@ template = """
 {% if structured_changelog.added %}
 ### Added
     {% for item in structured_changelog.added %}
- - {{ item }}
+- {{ item }}
     {% endfor %}
 {% endif %}
 
 {% if structured_changelog.changed %}
 ### Changed
     {% for item in structured_changelog.changed %}
- - {{ item }}
+- {{ item }}
     {% endfor %}
 {% endif %}
 
 {% if structured_changelog.fixed %}
 ### Fixed
     {% for item in structured_changelog.fixed %}
- - {{ item }}
+- {{ item }}
     {% endfor %}
 {% endif %}
 
 {% if structured_changelog.removed %}
 ### Removed
     {% for item in structured_changelog.removed %}
- - {{ item }}
+- {{ item }}
     {% endfor %}
 {% endif %}
 
 {% if structured_changelog.deprecated %}
 ### Deprecated
     {% for item in structured_changelog.deprecated %}
- - {{ item }}
+- {{ item }}
     {% endfor %}
 {% endif %}
 
 {% if structured_changelog.security %}
 ### Security
     {% for item in structured_changelog.security %}
- - {{ item }}
+- {{ item }}
     {% endfor %}
 {% endif %}
 """

cocode/pipelines/swe_docs/swe_docs.mthds

@@ -47,7 +47,6 @@ branches = [
   { pipe = "extract_test_strategy", result = "test_strategy" },
   { pipe = "extract_collaboration", result = "collaboration" },
 ]
-combined_output = "swe.OnboardingDocumentation"
 
 [pipe.extract_fundamentals]
 type = "PipeLLM"

cocode/pipelines/swe_docs/swe_docs.py

@@ -75,7 +75,7 @@ class CodingStandardsDoc(StructuredContent):
     )
 
 
-class TestingStrategyDoc(StructuredContent):
+class TestStrategyDoc(StructuredContent):
     test_pyramid_overview: Optional[str] = Field(
         None,
         description="Unit / integration / e2e boundaries and philosophy",
@@ -137,5 +137,5 @@ class OnboardingDocumentation(StructuredContent):
     fundamentals: Optional[FundamentalsDoc] = Field(None, description="Core project context and domain primer")
     environment_build: Optional[EnvironmentBuildDoc] = Field(None, description="Local environment requirements and build steps")
     coding_standards: Optional[CodingStandardsDoc] = Field(None, description="Style, linting, typing and security checks")
-    testing_strategy: Optional[TestingStrategyDoc] = Field(None, description="Testing philosophy, organization, commands and targets")
+    test_strategy: Optional[TestStrategyDoc] = Field(None, description="Testing philosophy, organization, commands and targets")
     collaboration: Optional[CollaborationDoc] = Field(None, description="Branching, PR flow, issue templates and licenses")

cocode/swe/swe_cmd.py

@@ -10,7 +10,7 @@
 from pipelex.core.stuffs.stuff_factory import StuffFactory
 from pipelex.hub import get_required_concept
 from pipelex.pipe_run.pipe_run_mode import PipeRunMode
-from pipelex.pipeline.runner import PipelexRunner
+from pipelex.pipeline.runner import PipelexMTHDSProtocol
 from pipelex.reporting.cost_report_renderer import render_cost_report_for_output
 from pipelex.tools.misc.file_utils import ensure_path, failable_load_text_from_path, load_text_from_path, save_text_to_path
 
@@ -32,8 +32,8 @@ async def _execute_pipeline(
     inputs: Any = None,
     pipe_run_mode: PipeRunMode | None = None,
 ) -> PipeOutput:
-    runner = PipelexRunner(pipe_run_mode=pipe_run_mode)
-    response = await runner.execute_pipeline(pipe_code=pipe_code, inputs=inputs)
+    runner = PipelexMTHDSProtocol(pipe_run_mode=pipe_run_mode)
+    response = await runner.execute(pipe_code=pipe_code, inputs=inputs)
     return response.pipe_output
 
 

pipelex.toml

@@ -12,8 +12,3 @@ api_key_method = "env"
 
 [cogt.extract_config]
 page_output_text_file_name = "page_text.md"
-
-[pipelex.feature_config]
-# WIP/Experimental feature flags
-is_pipeline_tracking_enabled = false
-is_reporting_enabled = true

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "cocode"
-version = "0.7.1"
+version = "0.8.0"
 description = "Cocode is the friend of your code"
 authors = [{ name = "Evotis S.A.S.", email = "evotis@pipelex.com" }]
 maintainers = [{ name = "Pipelex staff", email = "oss@pipelex.com" }]
@@ -18,7 +18,7 @@ classifiers = [
 ]
 
 dependencies = [
-  "pipelex[anthropic,google,google-genai,bedrock]==0.32.1",
+  "pipelex[anthropic,google,google-genai,bedrock]==0.37.0",
   "PyGithub==2.4.0",
 ]
 
@@ -38,7 +38,7 @@ dev = [
   "pytest-cov>=6.1.1",
   "pytest-mock>=3.14.0",
   "pytest-sugar>=1.0.0",
-  "ruff>=0.6.8",
+  "ruff==0.14.13",
   "types-aioboto3[bedrock,bedrock-runtime]>=13.4.0",
   "types-aiofiles>=24.1.0.20240626",
   "types-markdown>=3.6.0.20240316",