plant-trait-ontology.obo

format-version: 1.2
saved-by: cooperl
subsetdef: Allium_porrum "Terms_used_for_leek"
subsetdef: Cucurbita "Terms_used_for_squash"
subsetdef: Glycine_max "Terms_used_for_soybean"
subsetdef: Hordeum_vulgare "Term_used_for_barley"
subsetdef: Saccharum "Terms_used_for_sugarcane"
subsetdef: Solanaceae_spp "Terms_used_for_the_Solanaceae"
subsetdef: Triticum_aestivum "Terms_used_for_wheat"
subsetdef: Zea_mays "Terms_used_for_maize_or_corn"
default-namespace: plant_trait_ontology
import: http://purl.obolibrary.org/obo/po.owl
import: http://purl.obolibrary.org/obo/to/imports/chebi_import.owl
import: http://purl.obolibrary.org/obo/to/imports/go_import.owl
import: http://purl.obolibrary.org/obo/to/imports/ncbitaxon_import.owl
import: http://purl.obolibrary.org/obo/to/imports/pato_import.owl
import: http://purl.obolibrary.org/obo/to/patterns/merge_patterns.owl
ontology: to
property_value: http://purl.org/dc/terms/description "An ontology that describes phenotypic traits in plants. Each trait is a distinguishable feature, characteristic, quality or phenotypic feature of a developing or mature plant." xsd:string
property_value: http://purl.org/dc/terms/license http://creativecommons.org/licenses/by/4.0/
property_value: http://purl.org/dc/terms/title "Plant Trait Ontology" xsd:string
owl-axioms: Prefix(owl:=<http://www.w3.org/2002/07/owl#>)\nPrefix(rdf:=<http://www.w3.org/1999/02/22-rdf-syntax-ns#>)\nPrefix(xml:=<http://www.w3.org/XML/1998/namespace>)\nPrefix(xsd:=<http://www.w3.org/2001/XMLSchema#>)\nPrefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)\n\n\nOntology(\nDeclaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace>))\nDeclaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#id>))\n\n\nAnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/TO_0000005> \"plant_trait_ontology\")\nAnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/TO_0000005> \"TO:0000005\")\n)

[Term]
id: TO:0000001
name: OBSOLETE carbon sensitivity
def: "OBSOLETE Sensitivity to the carbon content in the growth medium. It plays an important role in the synthesis of various inorganic and organic metabolites such as carbohydrates, lipids, amino acids and peptides and plays a role in various metabolic processes." [Gramene:pankaj_jaiswal]
synonym: "carbon deficiency (related)" RELATED []
synonym: "CBSN (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000002
name: OBSOLETE epigenetic trait
def: "OBSOLETE. An epigenetic trait is a distinguishable feature or a characteristic or a quality of character or a phenotypic feature of a developing or developed individual but have arisen as a result of mechanisms regulating the expression of the genes rather than differences in the gene sequence." [Gramene:pankaj_jaiswal, ISBN:0198506732]
is_obsolete: true

[Term]
id: TO:0000003
name: alkali soil sensitivity
def: "Plant sensitivity to soils with alkali conditions (pH>7)." [RiceSES:SES, TO:moorel]
comment: Observed by general growth conditions in relation to standard resistant and susceptible checks. Since some soil problems are very heterogeneous in the field, several replications may be needed to obtain precise reading. Leaf is counted as discolored or dead if more than half of its area is discolored or dead.
synonym: "alkali sensitivity (related)" RELATED []
synonym: "AlkS (related)" RELATED []
is_a: TO:0000481 ! alkali sensitivity

[Term]
id: TO:0000004
name: reversible male sterility
def: "Trait of a plant in which the action of the cytotoxic gene used to introduce male sterility is suppressed by the application of a chemical to the plant. Reversion of the sterility allows the RMS parent to be self-fertilized, a step that overcomes the need to remove fertile sib plants prior to making the hybrid cross." [PMID:10645437]
synonym: "RMS (related)" RELATED []
is_a: TO:0000111 ! genetically engineered male sterility

[Term]
id: TO:0000006
name: calcium sensitivity
def: "Sensitivity to the calcium content in the growth medium. Plays an important role in cell wall synthesis and enzyme activities." [Gramene:pankaj_jaiswal]
synonym: "calcium deficiency (related)" RELATED []
synonym: "CALSN (related)" RELATED []
is_a: TO:0000251 ! secondary macronutrient sensitivity

[Term]
id: TO:0000007
name: sulfur sensitivity
def: "Response by the plant in terms of sensitivity to sulfur content in the growth medium. It is important for synthesis of some amino acid residues." [Gramene:pankaj_jaiswal]
synonym: "SFSN (related)" RELATED []
synonym: "sulfur deficiency (related)" RELATED []
is_a: TO:0000251 ! secondary macronutrient sensitivity

[Term]
id: TO:0000008
name: potassium sensitivity
def: "Sensitivity to the potassium ion content in the growth medium. It plays an important role in controlling water by osmosis and also in the metal ion homeostasis." [Gramene:pankaj_jaiswal]
synonym: "KSN (related)" RELATED []
synonym: "potassium deficiency (related)" RELATED []
is_a: TO:0000248 ! primary macronutrient sensitivity

[Term]
id: TO:0000009
name: photoperiod sensitive male sterility
def: "A plant male sterility trait (TO:0000437) which arises as a result of photoperiod." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "PGMS (related)" RELATED []
synonym: "photoperiod sensitive genic male sterility (related)" RELATED []
synonym: "PPDSNGMS (related)" RELATED []
is_a: TO:0000389 ! nuclear mediated male sterility

[Term]
id: TO:0000010
name: magnesium sensitivity
def: "Sensitivity to the magnesium content in the growth medium. It is important for chlorophyll biosynthesis and metal ion homeostasis." [Gramene:pankaj_jaiswal]
synonym: "magnesium deficiency (related)" RELATED []
synonym: "MGSN (related)" RELATED []
is_a: TO:0000251 ! secondary macronutrient sensitivity

[Term]
id: TO:0000011
name: nitrogen sensitivity
def: "Sensitivity to the nitrogen content in the growth medium. It is important for protein synthesis, chlorophyll etc." [Gramene:pankaj_jaiswal]
synonym: "NISN (related)" RELATED []
synonym: "nitrogen deficiency (related)" RELATED []
is_a: TO:0000248 ! primary macronutrient sensitivity

[Term]
id: TO:0000012
name: OBSOLETE hydrogen sensitivity
def: "OBSOLETE Sensitivity to the molecular hydrogen or hydrogen ion content in the growth medium. It plays an important role in the synthesis of various inorganic and organic metabolites such as carbohydrates, lipids, amino acids and peptides and plays a role in the energy metabolism, osmolarity,  etc." [Gramene:pankaj_jaiswal]
synonym: "hydrogen ion sensitivity (related)" RELATED []
synonym: "molecular hydrogen sensitivity (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000013
name: mycoplasma disease response
def: "A microbial disease response (TO:0000112) trait which is the response to damage to a plant structure (PO:0009011) caused by an infection by a mycoplasma (NCBITaxon:2093)." [Gramene:pankaj_jaiswal, NCBITaxon:2093, RiceSES:SES, TO:Laurel_Cooper]
comment: Plant structure (PO:0009011) includes the whole plant (PO:0000003), as well as parts of a plant. Plants can exhibit varying degrees of resistance or susceptibility to mycoplasma infections. Mycoplasma infections are often associated with an insect vector.
synonym: "MLO (related)" RELATED []
synonym: "MLORS (related)" RELATED []
is_a: TO:0000112 ! microbial disease response

[Term]
id: TO:0000014
name: panicle weight
def: "Average weight of the panicle from the plants or tillers in a given study." [Gramene:pankaj_jaiswal]
synonym: "PNWT (related)" RELATED []
is_a: TO:0000583 ! infructescence weight

[Term]
id: TO:0000015
name: OBSOLETE oxygen sensitivity
def: "OBSOLETE Sensitivity to the molecular oxygen or reactive oxygen ion content in the growth medium. It plays an important role in the synthesis of various inorganic and organic metabolites such as carbohydrates, lipids, aminoacids and peptides and plays a role in the energy metabolism." [Gramene:pankaj_jaiswal]
synonym: "oxygen deficiency (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000016
name: OBSOLETE cobalt sensitivity
def: "OBSOLETE Sensitivity to the cobalt content in the growth medium." [Gramene:pankaj_jaiswal]
synonym: "COSN (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000017
name: plant morphology trait
def: "A plant trait (TO:0000387) which is a morphological quality of a plant anatomical entity (PO:0025131) or a constituent cellular component (GO:0005575) contained therein." [GO:0005575, Gramene:pankaj_jaiswal, PO:0025131, TO:Laurel_Cooper]
comment: Includes traits of plant structures (PO:0009011) such as plant cell (PO:0009002), plant organ (PO:0009008), portion of plant tissue (PO:0009007), vascular system (PO:0000034), whole plant (PO:0000003) and seed (PO:0009010), as well as those of plant anatomical spaces (PO:0025117) and portions of plant substance (PO:0025161).
synonym: "plant architecture trait (related)" RELATED []
synonym: "plant structure trait (related)" RELATED []
xref: TO_GIT:54
is_a: TO:0000387 ! plant trait

[Term]
id: TO:0000018
name: boron sensitivity
def: "Sensitivity to the boron content in the growth medium. It plays an important role in cell division." [Gramene:pankaj_jaiswal]
synonym: "boron deficiency (related)" RELATED []
synonym: "BOSN (related)" RELATED []
is_a: TO:0000080 ! micronutrient response

[Term]
id: TO:0000019
name: seedling height
def: "Average height measurements of 10 seedlings, in centimeters from the base of the shoot to the tip of the tallest leaf blade." [RiceSES:SES]
synonym: "SH (related)" RELATED []
is_a: TO:0000207 ! plant height

[Term]
id: TO:0000020
name: black streak dwarf virus resistance
def: "A viral disease response trait (TO:0000148) which is caused by a black streaked dwarf virus." [NCBITaxon:10990, TO:Laurel_Cooper]
synonym: "BSDVRS (related)" RELATED []
is_a: TO:0000148 ! viral disease response trait

[Term]
id: TO:0000021
name: copper sensitivity
def: "Sensitivity to the copper ion content in the growth medium. Plays a role as cofactor in synthesis of some enzymes important in photosynthesis." [Gramene:pankaj_jaiswal]
synonym: "CUSN (related)" RELATED []
is_a: TO:0000080 ! micronutrient response

[Term]
id: TO:0000022
name: stink bug response trait
def: "A Hemiptera damage response trait (TO:0001164) caused by a stink bug (Oebalus pugnax)." [Gramene:pankaj_jaiswal, NCBITaxon:1328209, TO:Laurel_Cooper]
synonym: "SBUGRS (related)" RELATED []
is_a: TO:0001164 ! Hemiptera damage response trait

[Term]
id: TO:0000023
name: rice microbial grain discoloration
def: "Causal agent: species of Sarocladium, Bipolaris, Alternaria, Gerlachia, Fusarium, Phoma, Curvularia, Trichoconiella and Pseudomonas etc." [Gramene:pankaj_jaiswal, RiceSES:SES, TO:Laurel_Cooper]
comment: Symptoms: darkening of glumes of spikelets, brown color to black including rotten glumes caused by one or more pathogens. Intensity ranges from sporadic discoloration to discoloration of the whole glume. Severity of grain discoloration can be estimated by counting of grains with more than 25% of glume surface affected.
synonym: "Gd (related)" RELATED []
synonym: "grain discoloration (related)" RELATED []
is_a: TO:0000112 ! microbial disease response

[Term]
id: TO:0000024
name: ligule length
def: "A ligule morphology trait (TO:0002748) which is a length of a ligule measured in millimeters from the base of the leaf collar to the tip of the ligule (PO:0020105)." [PO:0020105, RiceSES:SES, TO:Laurel_Cooper]
comment: Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points.
synonym: "LgL (related)" RELATED []
synonym: "LIGLG (related)" RELATED []
xref: PATO:0000122
is_a: TO:0002748 ! ligule morphology trait

[Term]
id: TO:0000025
name: molybdenum sensitivity
def: "Important for nitrate fixation." [Gramene:pankaj_jaiswal]
is_a: TO:0000080 ! micronutrient response

[Term]
id: TO:0000026
name: aborted tri-nucleate stage
def: "Abortion at tri-nucleate stage of microspore development." [Gramene:pankaj_jaiswal, RiceSES:SES]
comment: An example is CMS-boro in rice.
synonym: "TNUABR (related)" RELATED []
is_a: TO:0000218 ! pollen abortion type

[Term]
id: TO:0000027
name: culm number
def: "Actual count of the total number of tillers after full heading, Specify if per plant, hill or area." [RiceSES:SES]
synonym: "CmN (related)" RELATED []
is_a: TO:0000077 ! shoot system morphology trait

[Term]
id: TO:0000028
name: unfilled grain number
def: "Number of unfilled florets in a grass inflorescence." [Gramene:pankaj_jaiswal]
synonym: "UNFILGRNB (related)" RELATED []
synonym: "unfilled florets per panicle (related)" RELATED []
synonym: "unfilled grain (related)" RELATED []
is_a: TO:0002759 ! grain number trait

[Term]
id: TO:0000029
name: chlorine sensitivity
def: "Sensitivity to the chlorine content in the growth medium. Chloride helps regulate the correct pH (acid/alkaline) balance. This is a major electrolyte in the living cell besides sodium and potassium. It is available to the cell mainly in the form of NaCl and KCl salts." [Gramene:pankaj_jaiswal]
synonym: "CHLORSN (related)" RELATED []
is_a: TO:0000080 ! micronutrient response

[Term]
id: TO:0000030
name: sedge weed response
def: "A weed damage response (TO:0000347) trait which is the response of a plant to weed competition from sedge weeds." [Gramene:pankaj_jaiswal, http://ipm.ucanr.edu/PMG/WEEDS/sedge_gallery.html, ISBN:9712200299, TO:Laurel_Cooper]
comment: Sedges are perennial plants which resemble grasses, and commonly grow in shallow water or moist soils, such as rice production fields.  Sedges may be distinguished from grasses by their stem cross-section (solid, triangular)  and leaf shape (long, thin-textured, narrow and flat).\nCommon sedge weeds in rice fields include Smallflower Umbrella Sedge (Cyperus difformis),  Ricefield Bulrush (Scirpus mucronatus), and River Bulrush (Scirpus fluviatilis).
is_a: TO:0000347 ! weed damage response trait

[Term]
id: TO:0000031
name: silicon transport trait
def: "A mineral and ion transport trait (TO:0020096) which involves the uptake and movement of silicon." [TO:Laurel_Cooper]
is_a: TO:0020096 ! mineral and ion transport trait

[Term]
id: TO:0000032
name: OBSOLETE selenium sensitivity
def: "OBSOLETE" []
is_obsolete: true

[Term]
id: TO:0000033
name: OBSOLETE iodine sensitivity
def: "OBSOLETE" []
is_obsolete: true

[Term]
id: TO:0000034
name: OBSOLETE chromium sensitivity
def: "OBSOLETE Sensitivity to the chromium content in the growth medium." [Gramene:pankaj_jaiswal]
synonym: "CHRSN (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000035
name: incompatibility trait
def: "A plant reproductive trait (TO:0000392) which is a genetic barrier preventing fertilization within a plant, or between two different plants." [TO:Laurel_Cooper]
is_a: TO:0000392 ! plant reproduction trait

[Term]
id: TO:0000036
name: hybrid incompatibility
def: "An incompatibility trait (TO:0000035) which is a genetic barrier preventing fertilization in a cross between two different lines." [TO:Laurel_Cooper]
synonym: "HYBIC (related)" RELATED []
is_a: TO:0000035 ! incompatibility trait

[Term]
id: TO:0000037
name: OBSOLETE male sterility extent
def: "OBSOLETE. Determines the extent of male sterility of a male sterile line. Can be determined by either pollen sterility or spikelet fertility" [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "degree of male sterility of male sterile lines (related)" RELATED []
synonym: "male sterility measure (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000038
name: OBSOLETE fluorine sensitivity
def: "OBSOLETE" []
is_obsolete: true

[Term]
id: TO:0000039
name: OBSOLETE yield component
def: "OBSOLETE. Defines the components that determine the over all yield from a plant" [Gramene:pankaj_jaiswal]
is_obsolete: true

[Term]
id: TO:0000040
name: panicle length
def: "A panicle morphology trait (TO:0000847) which is the measurement in centimeters from panicle base to tip." [RiceSES:SES]
comment: Evaluated at growth stage:8 in rice.
synonym: "PnL (related)" RELATED []
synonym: "PNLG (related)" RELATED []
is_a: TO:0000847 ! panicle inflorescence morphology trait

[Term]
id: TO:0000041
name: brown rice length
def: "A grain length (TO:0000734) monitored after dehulling but before polishing. The grain should contain pericarp (PO:0009084)." [PO:0009084, RiceSES:SES, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
synonym: "BRWLG (related)" RELATED []
synonym: "Len (related)" RELATED []
xref: PATO:0000122
is_a: TO:0000734 ! grain length

[Term]
id: TO:0000042
name: OBSOLETE f1-hybrid incompatibility
def: "OBSOLETE" []
synonym: "F1HYBIC (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000043
name: root morphology trait
def: "A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)." [Gramene:pankaj_jaiswal, PO:0025025, TO:Laurel_Cooper]
xref: TO_GIT:58
is_a: TO:0000738 ! plant axis morphology trait

[Term]
id: TO:0000044
name: stigma exsertion
def: "Trait is monitored by counting number of flowers or florets that have completed anthesis on a given day and showing exserted stigma. Trait expressed as percent stigma exsertion." [Gramene:pankaj_jaiswal, RiceSES:SES]
comment: Scale,  (%), Stigma exsertion; 1- Above 70, Well exserted; 3- 41-70, Moderately well exserted; 5- 21-40, Just exserted; 7- 11-20, Partly exserted; 9- 0-10, Enclosed.  Evaluated at growth stage:6 and 7 in rice.
synonym: "STIEX (related)" RELATED []
synonym: "stigma exsertion of male sterile lines (related)" RELATED []
is_a: TO:0006012 ! carpel morphology trait

[Term]
id: TO:0000045
name: rice udbatta disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Balanasia oryzae-sativae (Ephelis oryzae)." [Gramene:pankaj_jaiswal, NCBITaxon:116609, RiceSES:SES, TO:Laurel_Cooper]
comment: Symptoms: a white mycelial mat ties the panicle branches together so that they emerge as single, small, cylindrical rods.
synonym: "UDb (related)" RELATED []
is_a: TO:0001145 ! Ascomycete fungal disease response

[Term]
id: TO:0000046
name: OBSOLETE f2-generation sterility
def: "OBSOLETE" []
synonym: "F2GST (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000047
name: sporophytic incompatibility
def: "A self-incompatibility trait (TO:0000310) where the genotype of the plant determines pollen incompatibility." [TO:Laurel_Cooper]
is_a: TO:0000310 ! self-incompatibility

[Term]
id: TO:0000048
name: rice kernel smut disease response
def: "Causal agent: Tilletia barclayana." [Gramene:pankaj_jaiswal, NCBITaxon:157178, TO:Laurel_Cooper]
comment: Symptoms: infected grains show minute black pustules or streaks bursting through the glumes. In severe infection, the rupturing glumes produce short beak-like or spur-like outgrowths.
synonym: "KSm (related)" RELATED []
synonym: "KSRS (related)" RELATED []
is_a: TO:0001146 ! Basidiomycete fungal disease response

[Term]
id: TO:0000049
name: gametophytic incompatibility
def: "A self-incompatibility trait (TO:0000310) where the pollen's genotype determines incompatibility." [TO:Laurel_Cooper]
synonym: "GPHIC (related)" RELATED []
is_a: TO:0000310 ! self-incompatibility

[Term]
id: TO:0000050
name: inflorescence branching
alt_id: TO:0000263
def: "An inflorescence morphology trait (TO:0000373) which is the extent of branching. (PO:0009049)." [Gramene:pankaj_jaiswal, PO:0009049, TO:moorel]
comment: Branching usually determines the shape and compactness of the inflorescence
synonym: "panicle branching (related)" RELATED []
xref: TO_GIT:96
is_a: TO:0000373 ! inflorescence morphology trait

[Term]
id: TO:0000051
name: stem strength
def: "A stem morphology trait (TO:0000361) which is the strength of a stem (PO:0009047)." [Gramene:pankaj_jaiswal, PO:0009047, RiceSES:SES, TO:moorel]
comment: Refer to strength (PATO:0001230): A quality inhering in a bearer by virtue of the bearer's power or force.
synonym: "Cs (related)" RELATED []
synonym: "culm strength (related)" RELATED []
synonym: "CULMSTR (related)" RELATED []
synonym: "STEMSTR (related)" RELATED []
xref: PATO:0001230
is_a: TO:0000361 ! stem morphology trait

[Term]
id: TO:0000052
name: primary branching of inflorescence
def: "An inflorescence morphology trait (TO:0000373) which is the extent of primary branching that usually sets the tone for shape and compactness of the inflorescence (PO:0009049) (rice panicle)." [Gramene:pankaj_jaiswal, PO:0009049, TO:moorel]
synonym: "PBR (related)" RELATED []
synonym: "primary branching of panicle (related)" RELATED []
is_a: TO:0000050 ! inflorescence branching

[Term]
id: TO:0000053
name: OBSOLETE pollen sterility
def: "OBSOLETE" [Gramene:pankaj_jaiswal, RiceSES:SES]
is_obsolete: true

[Term]
id: TO:0000054
name: animal damage response trait
def: "A biotic plant stress trait (TO:0000179) which is the response to damage to a plant structure (PO:0009011) caused by an animal (NCBITaxon:33208)." [Gramene:pankaj_jaiswal, NCBITaxon:33208, PO:0009011, TO:cooper]
comment: Animals include vertebrates and invertebrates such as insects, arachnids and nematodes.
synonym: "pest resistance (related)" RELATED []
is_a: TO:0000179 ! biotic plant stress trait

[Term]
id: TO:0000055
name: leaf lamina pubescence
def: "A leaf lamina morphology trait (TO:0000829) which is the extent of pubescence  (presence of hairs)  on a leaf lamina (PO:0020039)." [RiceSES:SES]
comment: Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down.
synonym: "LBP (related)" RELATED []
synonym: "leaf blade pubescence (related)" RELATED []
synonym: "LFLHR (related)" RELATED []
synonym: "LFLPUBES (related)" RELATED []
xref: PATO:0001320
is_a: TO:0000829 ! leaf lamina morphology trait

[Term]
id: TO:0000056
name: stem color
def: "A stem morphology trait (TO:0000361) which is the color of a stem (PO:0009047)." [Gramene:pankaj_jaiswal, PO:0009047, TO:moorel]
comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
xref: PATO:0000014
is_a: TO:0000361 ! stem morphology trait

[Term]
id: TO:0000057
name: grain moisture content
def: "A fruit moisture content trait (TO:0000686) which is the amount of moisture in a caryopsis fruit (PO:0030104)." [TO:malaporte]
is_a: TO:0000686 ! fruit moisture content
relationship: part_of TO:0000162 ! grain quality trait

[Term]
id: TO:0000058
name: herbicide sensitivity
def: "A chemical stress sensitivity (TO:0000482) which is the tolerance exhibited by a plant towards the applied herbicide." [Gramene:pankaj_jaiswal, TO:moorel]
comment: It is expected that the herbicide application must not affect the agronomic yield, if any.
synonym: "herbicide tolerance (related)" RELATED []
synonym: "weedicide tolerance (related)" RELATED []
xref: PECO:0007183
is_a: TO:0002649 ! pesticide response

[Term]
id: TO:0000059
name: node color
def: "Color of the stem node." [Gramene:pankaj_jaiswal]
synonym: "NDCL (related)" RELATED []
is_a: TO:1000003 {is_inferred="true"} ! shoot axis node color
relationship: inheres_in PO:0020141 {is_inferred="true"} ! stem node
relationship: part_of TO:0000056 ! stem color

[Term]
id: TO:0000060
name: aborted uni-nucleate stage
def: "Abortion at uni-nucleate stage of microspore development." [Gramene:pankaj_jaiswal, RiceSES:SES]
comment: An example is CMS-WA in rice.
synonym: "UNUABR (related)" RELATED []
is_a: TO:0000218 ! pollen abortion type

[Term]
id: TO:0000061
name: node shattering
def: "A stem strength (TO:0000051) trait which is the tendency of stem node (PO:0020141) to break apart." [TO:cooperl]
synonym: "brittle node (related)" RELATED []
is_a: TO:0000051 ! stem strength

[Term]
id: TO:0000062
name: phenol reaction
def: "An enzyme activity trait (TO:0000599) which is a measure of the acitivity of polyphenol oxidase (PPO) enzymes in a seed coat or hull of a grain which catalyze the oxidation of phenolic compounds leading to the formation of melanin-like pigments." [TO:Laurel_Cooper]
comment: The phenol reaction is a color reaction used for cultivar identification and purity testing.
is_a: TO:0000599 ! enzyme activity trait

[Term]
id: TO:0000063
name: mimic response
def: "A plant stress response trait (TO:0000164) which is the result of mutations that naturally form necrotic lesions in the absence of significant stress or damage and without being harmed by pathogens." [TO:Laurel_Cooper]
synonym: "disease mimic response (related)" RELATED []
synonym: "lesion mimic (related)" RELATED []
synonym: "MIRP (related)" RELATED []
is_a: TO:0000164 ! plant stress response trait

[Term]
id: TO:0000064
name: plant embryo morphology trait
def: "A whole plant morphology trait (TO:0000398) which is a quality of a plant embryo (PO:0009009)." [PO:0009009, TO:moorel]
xref: TO_GIT:140
is_a: TO:0000398 ! whole plant morphology trait

[Term]
id: TO:0000065
name: root color
def: "A root morphology trait (TO:0000043) which is the color of a root (PO:0009005)." [Gramene:pankaj_jaiswal]
synonym: "RTCL (related)" RELATED []
is_a: TO:0000043 ! root morphology trait

[Term]
id: TO:0000066
name: OBSOLETE spot disease
def: "OBSOLETE." []
is_obsolete: true

[Term]
id: TO:0000067
name: temperature sensitive male sterility
def: "A plant male sterility trait (TO:0000437) which arises as a result of temperature extremes." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "TGMS (related)" RELATED []
synonym: "thermo sensitive genic male sterility (related)" RELATED []
is_a: TO:0000389 ! nuclear mediated male sterility

[Term]
id: TO:0000068
name: lodging incidence
def: "Measure of percentage of plants that lodged." [RiceSES:SES]
synonym: "Lg (related)" RELATED []
synonym: "LOI (related)" RELATED []
is_a: TO:0000250 ! plant vigor trait

[Term]
id: TO:0000069
name: variegated leaf
def: "A leaf color (TO:0000326) trait where the leaf (PO:0009025) has areas of green and non-green tissue." [TO:Laurel_Cooper]
synonym: "albino leaf striping (related)" RELATED []
synonym: "leaf stripes (related)" RELATED []
is_a: TO:0000326 ! leaf color

[Term]
id: TO:0000070
name: variegated leaf necrosis
def: "Variegated leaf necrosis or scorching observed in response to stresses like drought, insecticides and cold temperature as evidenced by chlorotic and/or necrotic tissue." [Gramene:pankaj_jaiswal]
comment: In maize this trait is observed for chlorotic tissue between veins or older leaves, causing holes and torn appearance.
synonym: "ragged leaf (related)" RELATED []
synonym: "VLFNEC (related)" RELATED []
is_a: TO:0000069 ! variegated leaf
is_a: TO:0000652 ! leaf necrosis

[Term]
id: TO:0000071
name: anthocyanin content
def: "The anthocyanin content in a plant structure (PO:0009011)." [ISBN:198506732]
comment: Anthocyanin is the red to purple pigments composed of soluble glycosides of anthocyanidins, present in leaves and floral tissue. Usually the pigment is produced under stress conditions. Amounts of anthocyanin produced depend on stored sugar and sunlight. The more stored sugar in the leaf and brighter the autumn days, the more intense red. Anthocyanin production also increases as phosphates move out of the leaves; the lack of phosphates in young leaves can also lead to the production of anthocyanin.
synonym: "ANTHCN (related)" RELATED []
is_a: TO:0000290 ! flavonoid content
is_a: TO:0000494 ! plant pigment content trait

[Term]
id: TO:0000072
name: awn length
def: "An awn morphology trait (TO:0002718) which is the length of awn (PO:0025349)." [PO:0025349, RiceSES:SES, TO:moorel]
comment: Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points.
synonym: "An (related)" RELATED []
synonym: "awning (related)" RELATED []
synonym: "AWNLG (related)" RELATED []
xref: PATO:0000122
is_a: TO:0002718 ! awn morphology trait

[Term]
id: TO:0000073
name: manganese sensitivity
def: "Sensitivity to the manganese content in the growth medium. It is important for activation of some enzymes and role in metal ion homeostasis." [Gramene:pankaj_jaiswal]
synonym: "MNSN (related)" RELATED []
is_a: TO:0000080 ! micronutrient response

[Term]
id: TO:0000074
name: rice blast disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Pyricularia grisea (Magnaporthe grisea)." [Gramene:pankaj_jaiswal, NCBITaxon:148305, TO:Laurel_Cooper]
comment: Symptoms: Can affect either or both the leaves and panicles.
synonym: "blast disease resistance trait (narrow)" NARROW []
synonym: "blast disease susceptibility (narrow)" NARROW []
xref: TO_GIT:69
is_a: TO:0001145 ! Ascomycete fungal disease response

[Term]
id: TO:0000075
name: light reponse trait
def: "Response shown by the plant in terms of sensitivity to light stress (quality and quantity of light)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
is_a: TO:0000161 ! radiation response trait

[Term]
id: TO:0000076
name: OBSOLETE inflorescence feature
def: "OBSOLETE. The instances define various distinguishing trait features associated with inflorescence and its instances." [Gramene:pankaj_jaiswal]
is_obsolete: true

[Term]
id: TO:0000077
name: shoot system morphology trait
def: "A collective plant organ structure morphology trait (TO:0000842) which is a quality of a shoot system (PO:0009006)." [Gramene:pankaj_jaiswal, PO:0009006, TO:Laurel_Cooper]
comment: Does not include traits of fruit, parts of fruit and adventitious roots which are borne on the shoot.
xref: TO_GIT:57
is_a: TO:0000842 ! collective plant organ structure morphology trait
created_by: jaiswalp

[Term]
id: TO:0000078
name: root dry weight
def: "The average dry weight of the root determined in a study." [Gramene:jcl, Gramene:pankaj_jaiswal]
synonym: "rdw (related)" RELATED []
synonym: "rdw/t (related)" RELATED []
synonym: "root dry weight per tiller (related)" RELATED []
synonym: "RTDWT (related)" RELATED []
synonym: "total root dry weight (related)" RELATED []
is_a: TO:0000279 ! root weight
relationship: part_of TO:0000352 ! plant dry weight

[Term]
id: TO:0000079
name: flower bract morphology trait
def: "A bract morphology trait (TO:0000815) which is a quality of a flower bract (PO:0009034)." [Gramene:pankaj_jaiswal, PO:0009034, TO:Laurel_Cooper]
xref: TO_GIT:390
is_a: TO:0000815 ! bract morphology trait
created_by: cooperl

[Term]
id: TO:0000080
name: micronutrient response
def: "A plant nutrient response trait (TO:0000480) shown by the plant grown in either the excess or deficient amount of the micronutrient in the growth medium (soil)." [Gramene:pankaj_jaiswal]
synonym: "micronutrient deficiency (related)" RELATED []
is_a: TO:0000480 ! plant nutrient response trait

[Term]
id: TO:0000081
name: deep root dry weight
def: "The average dry weight of the root, (for the root part 30cm below the soil surface) determined per tiller in a green house study." [Gramene:jcl, Gramene:pankaj_jaiswal]
synonym: "deep root dry weight per tiller (exact)" EXACT []
synonym: "deep root weight (exact)" EXACT []
synonym: "DRTDWT (exact)" EXACT []
synonym: "drw (exact)" EXACT []
synonym: "drw/t (exact)" EXACT []
is_a: TO:0000078 ! root dry weight

[Term]
id: TO:0000082
name: zigzag leafhopper response trait
def: "A Hemiptera damage response trait (TO:0001164) caused by a zigzag leafhopper (Recilia dorsalis)." [Gramene:pankaj_jaiswal, NCBITaxon:1582033, TO:Laurel_Cooper]
synonym: "ZLFHRS (related)" RELATED []
is_a: TO:0001164 ! Hemiptera damage response trait

[Term]
id: TO:0000083
name: penetrated root number
def: "Its the total number of roots penetrating the hard pans of the soil or the number of roots penetrated through the wax-petrolatum layer measured at 50 days after sowing (DAS)." [Gramene:jcl, Gramene:pankaj_jaiswal]
synonym: "npr (related)" RELATED []
synonym: "number of penetrating roots (related)" RELATED []
synonym: "PENRTNB (related)" RELATED []
is_a: TO:0000084 ! root number

[Term]
id: TO:0000084
name: root number
def: "A whole plant morphology trait (TO:0000398) which is the number of roots (PO:0009005)." [Gramene:pankaj_jaiswal, PATO:0001555, TO:Laurel_Cooper]
synonym: "RTNB (related)" RELATED []
synonym: "tnr (related)" RELATED []
xref: TO_GIT:357
is_a: TO:0000398 ! whole plant morphology trait

[Term]
id: TO:0000085
name: leaf rolling response
def: "A drought stress response trait (TO:0000394) which is the rolling of a leaf preceding the leaf drying stage." [Gramene:jcl, Gramene:pankaj_jaiswal, TO:moorel]
comment: Leaf rolling is a feature observed in response to stresses like drought, water and temperature.  If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
synonym: "LFRL (related)" RELATED []
synonym: "wilting (related)" RELATED []
is_a: TO:0000394 ! drought stress response trait

[Term]
id: TO:0000086
name: rice sheath rot disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Sarocladium oryzae." [Gramene:pankaj_jaiswal, NCBITaxon:284135, RiceSES:SES, TO:Laurel_Cooper]
comment: Symptoms: oblong or irregular brown to grey lesions on the leaf sheath near panicle; sometimes coalescing to prevent emergence of panicle.
synonym: "ShR (related)" RELATED []
synonym: "SHROTRS (related)" RELATED []
is_a: TO:0001145 ! Ascomycete fungal disease response

[Term]
id: TO:0000087
name: grain aroma trait
def: "A grain quality trait (TO:0000162) which is the aroma of the cooked or uncooked grains." [Gramene:pankaj_jaiswal, RiceSES:SES, TO:Laurel_Cooper]
comment: It is often associated with the accumulation of the aromatic compound 2-acetyl-1-pyrroline.
synonym: "AROMA (related)" RELATED []
synonym: "odour (related)" RELATED []
synonym: "scent (exact)" EXACT []
synonym: "Sct (related)" RELATED []
is_a: TO:0000162 ! grain quality trait
relationship: part_of TO:0002694 ! fruit flavor trait

[Term]
id: TO:0000088
name: rice yellow mottle virus resistance
def: "Causal agent: rice yellow mottle virus (RYMV). Symptoms: stunting, reduced tillering, mottling and yellowish streaking of the leaves, delayed flowering or incomplete emergence of the panicle; in extreme cases, death of plants." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "RYMV (related)" RELATED []
synonym: "RYMVRS (related)" RELATED []
is_a: TO:0000148 ! viral disease response trait

[Term]
id: TO:0000089
name: panicle inflorescence type
def: "A panicle inflorescence morphology trait (TO:0000847) which is the mode of branching, angle of primary branches, and spikelet density of a panicle inflorescence (PO:0030123)." [RiceSES:SES, TO:moorel]
synonym: "panicle attitude of branches (related)" RELATED []
synonym: "PnT (related)" RELATED []
synonym: "PNTYPE (related)" RELATED []
is_a: TO:0000847 ! panicle inflorescence morphology trait

[Term]
id: TO:0000090
name: penetrated root thickness
def: "At 50 days after sowing (DAS), the thickness of roots penetrated through the wax-petrolatum layer is measured.  Penetrated root thickness is measured on penetrated roots immediately below the wax layer." [Gramene:jcl, Gramene:pankaj_jaiswal]
synonym: "PENRTTH (related)" RELATED []
synonym: "prt (related)" RELATED []
is_a: TO:0000306 ! root thickness

[Term]
id: TO:0000091
name: OBSOLETE leafhopper
def: "OBSOLETE." []
is_obsolete: true

[Term]
id: TO:0000092
name: deep root to shoot ratio
def: "The ratio of deep root length (for the roots found 30cm below the soil surface) and the shoot length determined in a study." [Gramene:pankaj_jaiswal]
synonym: "deep root length to shoot length ratio (related)" RELATED []
synonym: "deep root ratio (related)" RELATED []
synonym: "deep root/shoot ratio (related)" RELATED []
synonym: "dr/s (related)" RELATED []
synonym: "DRTSHRO (related)" RELATED []
is_a: TO:0000278 ! root length to shoot length ratio

[Term]
id: TO:0000093
name: root pulling force
def: "A drought related trait (TO:0000394) which is a measure of the pulling force required to uproot the plant." [TO:Laurel_Cooper]
comment: Root pulling force is correlated with root weight (TO:0000279), root branching (TO:0000257) and thick root number. It is a measure of the drought resistance and is often evaluatred on rice seedlings.
synonym: "rpf (related)" RELATED []
synonym: "RTPF (related)" RELATED []
is_a: TO:0000394 ! drought stress response trait

[Term]
id: TO:0000094
name: basal root thickness
def: "The thickness of the root present 2cm below the soil surface." [Gramene:jcl, Gramene:pankaj_jaiswal]
synonym: "BARTTH (related)" RELATED []
synonym: "brt (related)" RELATED []
is_a: TO:0000306 ! root thickness

[Term]
id: TO:0000095
name: osmotic response sensitivity
def: "Sensitivity to the osmoticum in the growth medium." [Gramene:pankaj_jaiswal]
synonym: "oa (related)" RELATED []
synonym: "OSRPSN (related)" RELATED []
is_a: TO:0000237 ! water stress response trait

[Term]
id: TO:0000096
name: ratooning ability
def: "A shoot system growth and development trait (TO:0000654) which is the ability of a plant to regenerate after harvesting, allowing a secod harvest." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "RAAB (related)" RELATED []
is_a: TO:0000654 ! shoot system growth and development trait
relationship: part_of TO:0000250 ! plant vigor trait

[Term]
id: TO:0000097
name: amylopectin content
def: "Amount of amylopectin present in a plant structure (PO:0009011)." [ISBN:198506732]
comment: It is a polysaccharide present in starch. Amylopectin is a polymer of alpha(1,4)-linked glucose units, as is amylose (see amylose). Unlike amylose, amylopectin contains branches of 2430 glucose units connected to the main chain by an alpha(1,6) linkage.
synonym: "AMYPCTCN (related)" RELATED []
is_a: TO:0006007 ! polysaccharide content
relationship: part_of TO:0001166 ! starch quality trait

[Term]
id: TO:0000098
name: glutinous endosperm
def: "An endosperm morphology trait (TO:0000575) which is an opaque and hard endosperm (PO:0009089) with low or no amylose content (TO:0000196)." [Gramene:pankaj_jaiswal, PO:0009089, TO:moorel]
comment: If the endosperm has high amount of amylose it is called as non-glutinous endosperm. This is also an endosperm quality trait (TO:0000587).
synonym: "opaque endosperm (related)" RELATED []
synonym: "waxy endosperm (related)" RELATED []
xref: TO_GIT:133
is_a: TO:0000575 ! endosperm morphology trait
is_a: TO:0000587 ! endosperm quality

[Term]
id: TO:0000099
name: sugary endosperm
def: "An endosperm morphology trait (TO:0000575) which is a wrinkled and glassy endosperm (PO:0009089) when dry." [Gramene:pankaj_jaiswal, PO:0009089, TO:moorel]
comment: This is also an endosperm quality trait (TO:0000587).
synonym: "sugary kernel (related)" RELATED []
xref: TO_GIT:133
is_a: TO:0000575 ! endosperm morphology trait
is_a: TO:0000587 ! endosperm quality

[Term]
id: TO:0000100
name: shrunken endosperm
def: "An endosperm morphology trait (TO:0000575) which is a shrunken and opaque endosperm (PO:0009089)." [Gramene:pankaj_jaiswal, PO:0009089, TO:moorel]
comment: This is also an endosperm quality trait (TO:0000587). Refers to shrunken PATO:0000585 A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ).
synonym: "collapsed kernel (related)" RELATED []
synonym: "transluscent kernel (related)" RELATED []
xref: PATO:0000585
xref: TO_GIT:133
is_a: TO:0000575 ! endosperm morphology trait
is_a: TO:0000587 ! endosperm quality

[Term]
id: TO:0000101
name: broad-leaved weed
def: "A common sedge weed Monochoria vaginalis (monochoria), California arrowhead Sagittaria montevidensis, Gregg arrowhead Sagittaria longiloba, Ducksalad Heteranthera limosa, Echinodorus berteroi and E. cordifolius (Burhead), Ammannia spp (Redstems), Bacopa spp. (Water hyssops), Alisma plantago-aquatica (Common water plantain). Grows as a weed in the rice field. Can be distinguished from rice plant by the leaf shape, venation, stem cross-section and plant shape leaf shape." [Gramene:pankaj_jaiswal, http://www.ipm.ucdavis.edu/PMG/r682700999.html, ISBN:9712200299]
is_a: TO:0000347 ! weed damage response trait

[Term]
id: TO:0000102
name: phosphorus response
def: "Response to the phosphorus content in the growth medium." [RiceSES:SES]
comment: Phosphorus is important in various biochemical pathways and storage of energy."
synonym: "PDef (related)" RELATED []
synonym: "PHOSN (related)" RELATED []
synonym: "phosphorus deficiency (related)" RELATED []
synonym: "phosphorus toxicity (related)" RELATED []
is_a: TO:0000248 ! primary macronutrient sensitivity

[Term]
id: TO:0000103
name: deepwater stress
def: "The sensitivity response shown by the plant growing in a stagnant water for a long period of time (not unlike deepwater presence during flash flooding of the fields)." [Gramene:pankaj_jaiswal]
synonym: "deep water stress (related)" RELATED []
synonym: "DWSTR (related)" RELATED []
is_a: TO:0000286 ! submergence response trait

[Term]
id: TO:0000104
name: floury endosperm
def: "An endosperm morphology trait (TO:0000575) which is an opaque and soft endosperm (PO:0009089)." [Gramene:pankaj_jaiswal, PO:0009089, TO:moorel]
comment: This is also an endosperm quality trait (TO:0000587).
xref: TO_GIT:133
is_a: TO:0000575 ! endosperm morphology trait
is_a: TO:0000587 ! endosperm quality

[Term]
id: TO:0000105
name: dull endosperm
def: "An endosperm morphology trait (TO:0000575) which is a glassy and tarnished endosperm (PO:0009089) with low amylose content (TO:0000196)." [Gramene:pankaj_jaiswal, PO:0009089, TO:moorel]
comment: This is also an endosperm quality trait (TO:0000587).
synonym: "glassy endosperm (related)" RELATED []
xref: TO_GIT:133
is_a: TO:0000575 ! endosperm morphology trait
is_a: TO:0000587 ! endosperm quality

[Term]
id: TO:0000106
name: OBSOLETE male sterility type
def: "OBSOLETE Represents the different types of male sterility found in plants." [Gramene:pankaj_jaiswal]
synonym: "MS (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000107
name: endosperm storage protein-1 content
def: "Assay for the amount of 13kDa seed storage protein present in the endosperm." [Gramene:pankaj_jaiswal]
is_a: TO:0002653 ! endosperm storage protein content

[Term]
id: TO:0000108
name: leaf shattering
def: "A leaf growth and development trait (TO:0000655) which is the extent of leaf shattering based on the development of a leaf abscission zone (PO:0006501)." [Gramene:pankaj_jaiswal, PO:0006501, TO:Laurel_Cooper]
comment: The leaf shattering trait is the occurence of  the biological process of leaf abscission (GO:0060866): the controlled shedding of a leaf.
synonym: "leaf abscission (related)" RELATED [GO:0060866, SOY:0001342]
synonym: "LFSH (related)" RELATED []
xref: GO:0060866
xref: SOY:0001342
is_a: TO:0000655 ! leaf growth and development trait

[Term]
id: TO:0000109
name: endosperm storage protein-2 content
def: "Assay for amount of 57kDa seed storage protein present in the endosperm." [Gramene:pankaj_jaiswal]
is_a: TO:0002653 ! endosperm storage protein content

[Term]
id: TO:0000110
name: OBSOLETE wild abortive CMS
def: "OBSOLETE  Abortion of microspore development at uni-nucleate stage." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "CMS-WA (related)" RELATED []
synonym: "WACMS (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000111
name: genetically engineered male sterility
def: "A plant male sterility trait (TO:0000437) which is caused by transgenes expressing cytotoxic component." [Gramene:pankaj_jaiswal, RiceSES:SES]
is_a: TO:0000437 ! plant male sterility

[Term]
id: TO:0000112
name: microbial disease response
def: "A biotic plant stress trait (TO:0000179) which is the response to damage to a plant structure (PO:0009011) caused by an infection by a microbial pathogen." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: The plant response to a microbial infection may be manifested in either the whole plant (PO:0000003) or in parts of the plant. The damage is a direct measure of resistance to the particular pathogen causing the disease.
synonym: "disease control (broad)" BROAD []
synonym: "disease resistance trait (narrow)" NARROW []
synonym: "disease susceptibility (narrow)" NARROW []
synonym: "disease tolerance (narrow)" EXACT []
is_a: TO:0000179 ! biotic plant stress trait

[Term]
id: TO:0000113
name: giant embryo
def: "An embryo shape trait (TO:0000193) that is a large sized plant embryo (PO:0009009)." [Gramene:pankaj_jaiswal, PO:0009009, TO:moorel]
is_a: PATO:0000586 {is_inferred="true"} ! increased size
is_a: TO:0000193 ! plant embryo shape
is_a: TO:1000012 {is_inferred="true"} ! whole plant size
relationship: inheres_in PO:0009009 {is_inferred="true"} ! plant embryo

[Term]
id: TO:0000114
name: OBSOLETE flooding related trait
def: "OBSOLETE" []
is_obsolete: true

[Term]
id: TO:0000115
name: root mass density
def: "Determined as the dry mass of roots per unit soil volume at a given soil section." [Gramene:pankaj_jaiswal]
synonym: "rmd (related)" RELATED []
synonym: "RTMD (related)" RELATED []
is_a: TO:0000043 ! root morphology trait

[Term]
id: TO:0000116
name: root mass density 0-15
def: "Root mass density 0-15 cm was calculated as the dry mass of roots per unit soil volume at 0-15 cm soil section." [Gramene:jcl, Gramene:pankaj_jaiswal]
synonym: "rmd 0-15 (related)" RELATED []
is_a: TO:0000115 ! root mass density

[Term]
id: TO:0000117
name: rat damage response trait
def: "A rodent damage response trait (TO:0001141) which is the response to damage to a plant structure (PO:0009011) caused by a rat (NCBITaxon:10114)." [Gramene:pankaj_jaiswal, NCBITaxon:10114, PO:0009011, RiceSES:SES, TO:Laurel_Cooper]
synonym: "RD (related)" RELATED []
is_a: TO:0001141 ! rodent damage response trait

[Term]
id: TO:0000118
name: root mass density 15-30
def: "Root mass density 15-30 cm was calculated as the dry mass of roots per unit soil volume at 15-30 cm soil section." [Gramene:jcl, Gramene:pankaj_jaiswal]
synonym: "rmd 15-30 (related)" RELATED []
is_a: TO:0000115 ! root mass density

[Term]
id: TO:0000119
name: root mass density 30-45
def: "Root mass density 30-45 cm was calculated as the dry mass of roots per unit soil volume at 30-45 cm soil section." [Gramene:jcl, Gramene:pankaj_jaiswal]
synonym: "rmd 30-45 (related)" RELATED []
is_a: TO:0000115 ! root mass density

[Term]
id: TO:0000120
name: percent root mass density
def: "Calculated as percent of root mass density over the total root mass density. Both parameters scored at the same depth." [Gramene:pankaj_jaiswal]
synonym: "PCENTRTMD (related)" RELATED []
synonym: "prmd (related)" RELATED []
is_a: TO:0000115 ! root mass density

[Term]
id: TO:0000121
name: ufra damage
def: "Causal agent: the stem nematode Dictylenchus angustus. Symptoms: leaf mottling or chlorotic discoloration in a splash pattern at base of young leaves in stem elongation or mid-tillering stage; brown stains may develop on leaves and sheaths which later intensify to a dark brown color. A characteristic distortion consisting of twisting and withering of young leaves. A distortion of panicle which either remains enclosed with in a swollen sheath, partially emerge but are twisted and with unfilled grains or emerge completely but with unfilled grains and resembling a whitehead." [Gramene:pankaj_jaiswal, RiceSES:SES]
comment: Evaluated at growth stage:6-7 in rice.
synonym: "U (related)" RELATED []
is_a: TO:0000384 ! nematode damage response trait

[Term]
id: TO:0000122
name: percent root mass density 0-15
def: "Calculated as percent of root mass density in this section over the total root mass density. Both scored at the 0-15cm depth." [Gramene:jcl, Gramene:pankaj_jaiswal]
synonym: "prmd 0-15 (related)" RELATED []
is_a: TO:0000116 ! root mass density 0-15
is_a: TO:0000120 ! percent root mass density

[Term]
id: TO:0000123
name: percent root mass density 15-30
def: "Calculated as percent of root mass density in this section over the total root mass density. Both scored at the 15-30cm depth." [Gramene:jcl, Gramene:pankaj_jaiswal]
synonym: "prmd 15-30 (related)" RELATED []
is_a: TO:0000118 ! root mass density 15-30
is_a: TO:0000120 ! percent root mass density

[Term]
id: TO:0000124
name: flag leaf angle
def: "A flag leaf morphology trait (TO:0000832) which is an angle of the flag leaf (PO:0020103) measured near the collar, as the angle of attachment between the flag leaf blade and the main inflorescence axis in grass plants." [PO:0020103, RiceSES:SES, TO:Laurel_Cooper, TO:moorel]
synonym: "FLFAG (related)" RELATED []
is_a: TO:0000832 ! flag leaf morphology trait

[Term]
id: TO:0000125
name: percent root mass density 30-45
def: "Calculated as percent of root mass density in this section over the total root mass density. Both scored at the 30-45cm depth." [Gramene:jcl, Gramene:pankaj_jaiswal]
synonym: "prmd 30-45 (related)" RELATED []
is_a: TO:0000119 ! root mass density 30-45
is_a: TO:0000120 ! percent root mass density

[Term]
id: TO:0000126
name: rice grassy stunt virus-2 resistance
def: "Causal agent: rice grassy stunt virus 2 (RGSV2). Symptoms: RGSV2 causes severe stunting, excessive tillering, yellow to orange and narrow leaves with small rusty spots." [Gramene:pankaj_jaiswal]
synonym: "RGSV2 (related)" RELATED []
synonym: "RGSV2RS (related)" RELATED []
is_a: TO:0000213 ! rice grassy stunt 1 and 2 virus resistance

[Term]
id: TO:0000127
name: rice grassy stunt virus-1 resistance
def: "Causal agent: rice grassy stunt virus 1 (RGSV1). Symptoms: RGSV1 causes severe stunting, excessive tillering, pale green to yellow and narrow leaves with small rusty spots." [Gramene:pankaj_jaiswal]
synonym: "RGSV1 (related)" RELATED []
synonym: "RGSV1RS (related)" RELATED []
is_a: TO:0000213 ! rice grassy stunt 1 and 2 virus resistance

[Term]
id: TO:0000128
name: harvest index
def: "Proportion of usable (economically significant) biomass over total (biological) biomass, expressed as a percentage." [Gramene:jcl, Gramene:pankaj_jaiswal]
synonym: "HI (related)" RELATED []
synonym: "HVID (related)" RELATED []
is_a: TO:0000371 ! yield trait

[Term]
id: TO:0000129
name: rice false smut disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Ustilaginoidea virens." [Gramene:pankaj_jaiswal, NCBITaxon:1159556, RiceSES:SES, TO:Laurel_Cooper]
comment: Symptoms: infected grains are transformed into yellow-greenish or greenish-black velvety-looking spore balls.
synonym: "FSm (related)" RELATED []
synonym: "FSRS (related)" RELATED []
is_a: TO:0001145 ! Ascomycete fungal disease response

[Term]
id: TO:0000130
name: far red light sensitivity
def: "Sensitivity to the far red light content in the growth environment." [Gramene:pankaj_jaiswal]
synonym: "FRLTSN (related)" RELATED []
synonym: "Pfr light sensitivity (related)" RELATED []
is_a: TO:0000265 ! light quality response

[Term]
id: TO:0000131
name: leaf water potential
def: "Water potential of a leaf." [Gramene:pankaj_jaiswal]
synonym: "LFWP (related)" RELATED []
synonym: "lwp (related)" RELATED []
is_a: TO:0000237 ! water stress response trait

[Term]
id: TO:0000132
name: basal internode diameter
def: "Actual measurements in millimeters from the outer diameter of the stem at the basal portion of the main stem." [RiceSES:SES]
synonym: "BAINDIA (related)" RELATED []
synonym: "DBI (related)" RELATED []
is_a: TO:0000361 ! stem morphology trait

[Term]
id: TO:0000133
name: OBSOLETE stature or vigor trait
def: "OBSOLETE: A subjective assessment of the plant in similar site and growing conditions (often unfavorable conditions) based upon a specific facet of growth." [Gramene:pankaj_jaiswal]
is_obsolete: true
created_by: jaiswalp

[Term]
id: TO:0000134
name: starch alkali digestion
def: "A starch gelatinization trait (TO:0001167) which is the treatment of starch with an alkali solution, which alters its physical and chemical properties." [Gramene:pankaj_jaiswal, RiceSES:SES, TO:Laurel_Cooper]
comment: Akali digestion is an indirect measure of gelatinization temperature and is inversely proportional to the gelatinization temperature, e.g. if alkali digestion is low, the gelatinization temperature is high.
synonym: "AlkD (related)" RELATED []
synonym: "ALKDIG (related)" RELATED []
is_a: TO:0001167 ! starch gelatinization trait

[Term]
id: TO:0000135
name: leaf length
def: "A leaf morphology trait (TO:0000748) which is the length of a leaf (PO:0025034)." [PO:0025034, RiceSES:SES, TO:Laurel_Cooper, TO:moorel]
comment: Actual measurements, in centimeters of the leaf. Refers to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. In maize, this is measured in centimeters. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
synonym: "LFLG (related)" RELATED []
synonym: "lfln (related)" RELATED [MaizeGDB_QTL:61715]
synonym: "LL (related)" RELATED []
xref: MaizeGDB_QTL:61715
xref: PATO:0000122
xref: TO_GIT:247
is_a: TO:0000748 ! leaf morphology trait
relationship: part_of TO:0000542 ! leaf length to width ratio
relationship: part_of TO:0002637 ! leaf size

[Term]
id: TO:0000136
name: leaf relative water content
def: "Leaf relative water content is determined at midday (12.00 noon)." [Gramene:jcl, Gramene:pankaj_jaiswal]
synonym: "leaf relative water content (related)" RELATED []
synonym: "rec (related)" RELATED []
synonym: "RELWCN (related)" RELATED []
is_a: TO:0000131 ! leaf water potential

[Term]
id: TO:0000137
name: days to heading
def: "Number of days required for the inflorescence (head/cob/panicle) to emerge from the flag leaf of a plant or a group of plants in a study." [Gramene:pankaj_jaiswal]
comment: Often determined when the 50% length of the inflorescence has emerged as compared to its full length. Number of days is calculated from either the day of sowing of seeds or from the day of transplanting the seedlings (in case of rice) depending on type of study.
synonym: "DTHD (related)" RELATED []
synonym: "heading date (related)" RELATED []
is_a: TO:0001021 ! days to inflorescence exsertion

[Term]
id: TO:0000138
name: brown rice protein content
def: "A grain protein content (TO:0001136) which is the amount of protein (CHEBI:36080) in a brown rice grain (caryopsis fruit; PO:0030104)." [RiceSES:SES, TO:Laurel_Cooper]
synonym: "BrP (related)" RELATED []
synonym: "BRWRPROT (related)" RELATED []
synonym: "Prt (related)" RELATED []
is_a: TO:0001136 ! grain protein content

[Term]
id: TO:0000140
name: lemma apiculus color
def: "A cardinal organ part morphology trait (TO:0000754) which is the color of a lemma apiculus (PO:0025616)." [RiceSES:SES]
synonym: "ApC (related)" RELATED []
synonym: "APICL (related)" RELATED []
is_a: TO:0000754 ! cardinal organ part morphology trait
relationship: part_of TO:0000536 ! spikelet floret color

[Term]
id: TO:0000141
name: awn color
def: "An awn morphology trait (TO:0002718) which is a color of the awn (PO:0025349)." [PO:0025349, RiceSES:SES, TO:moorel]
comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
synonym: "AWNCL (related)" RELATED []
xref: PATO:0000014
is_a: TO:0002718 ! awn morphology trait
relationship: part_of TO:0000536 ! spikelet floret color

[Term]
id: TO:0000142
name: secondary branching of inflorescence
def: "An inflorescence branching (TO:0000050) trait which is the extent of secondary branching that usually determines the shape and compactness of the inflorescence  (PO:0009049) (such as in rice panicle)." [Gramene:pankaj_jaiswal, PO:0009049, RiceSES:SES, TO:moorel]
synonym: "panicle secondary branching (related)" RELATED []
synonym: "PnBr (related)" RELATED []
synonym: "SBR (related)" RELATED []
synonym: "secondary branching of panicle (related)" RELATED []
is_a: TO:0000050 ! inflorescence branching

[Term]
id: TO:0000143
name: relative biomass
def: "Relative yield was calculated as the ratio of biomass in stress to that of control." [Gramene:jcl, Gramene:pankaj_jaiswal]
synonym: "RB (related)" RELATED []
synonym: "relative biomass yield (related)" RELATED []
synonym: "RELBIOM (related)" RELATED []
is_a: TO:0000371 ! yield trait

[Term]
id: TO:0000144
name: milled rice yield
def: "A grain yield trait (TO:0000396) which is the proportion of kernels remaining after milling to remove the bran." [https://ricecap.hosted.uark.edu/glossary_ricecaplist.htm#M]
comment: Milling is part of rice processing where the caryopsis hull (PO:0006000) and bran is removed. Milled rice consists of the broken kernels as well as the head rice (whole or 3/4 of original length or longer) milled kernels.
synonym: "milled rice ratio (related)" RELATED []
synonym: "MR (related)" RELATED []
is_a: TO:0000396 ! grain yield trait

[Term]
id: TO:0000145
name: shoot axis internode length
def: "A shoot axis internode morphology trait (TO:0000755) which is the length of a shoot axis internode (PO:0005005)." [Gramene:pankaj_jaiswal]
synonym: "INLG (related)" RELATED []
is_a: TO:0000755 ! shoot axis internode morphology trait
relationship: part_of TO:0000576 ! stem length

[Term]
id: TO:0000146
name: seed length
alt_id: TO:0000395
def: "A seed morphology trait (TO:0000184) which is the length of a seed (PO:0009010)." [Gramene:pankaj_jaiswal, PO:0009010, RiceSES:SES, TO:moorel]
comment: Seed length is a component of seed size (TO:0000391) and has a component of seed quality (TO:0000162). Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
synonym: "SDLG (related)" RELATED []
xref: PATO:0000122
xref: TO_GIT:195
is_a: TO:0000184 ! seed morphology trait
relationship: part_of TO:0000391 ! seed size

[Term]
id: TO:0000147
name: rice hoja blanca disease resistance
def: "Causal agent: rice hoja blanca virus (RHBV). Symptoms: cream colored to yellow spots, elongating and coalescing to form longitudinal yellowish green to pale green striations. Streaks may coalesce to cover the whole leaf. Brown and sterile glumes with typical \"parrot beak\" shape of deformation." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "HBVRS (related)" RELATED []
synonym: "RHBV (related)" RELATED []
is_a: TO:0000148 ! viral disease response trait

[Term]
id: TO:0000148
name: viral disease response trait
def: "A microbial disease response (TO:0000112) trait which is the response to damage to a plant structure (PO:0009011) caused by an infection by a virus (NCBITaxon:10239)." [Gramene:pankaj_jaiswal, NCBITaxon:10239, RiceSES:SES, TO:Laurel_Cooper]
comment: It represents the damage done by the diease and/or the viral pathogen to the plant. The damage is a direct measure of resistance to the particular viral strain causing the diease.
is_a: TO:0000112 ! microbial disease response

[Term]
id: TO:0000149
name: seed width
def: "A seed morphology trait (TO:0000184) which is the width of a seed (PO:0009010)." [Gramene:pankaj_jaiswal, PO:0009010, RiceSES:SES, TO:moorel]
comment: Seed width is measured in millimeters as the distance across the seed and is a component of the seed size (TO:0000391) and can be a component of seed quality (TO:0000162). Refers to (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
synonym: "plump seed (related)" RELATED []
synonym: "SDWD (related)" RELATED []
xref: PATO:0000921
xref: TO_GIT:194
is_a: TO:0000184 ! seed morphology trait
relationship: part_of TO:0000391 ! seed size

[Term]
id: TO:0000151
name: OBSOLETE rice skipper resistance
def: "OBSOLETE Causal agent: Pelopidas mathias (Fabricius) and Parnara guttata." [Gramene:pankaj_jaiswal]
synonym: "SKIPRS (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000152
name: panicle number
def: "A panicle morphology trait (TO:0000847) which is the average number of panicles per plant in a study." [Gramene:pankaj_jaiswal, TO:moorel]
synonym: "NOP (related)" RELATED []
synonym: "NP (related)" RELATED []
synonym: "number of effective tiller per plant (related)" RELATED []
synonym: "number of panicle (related)" RELATED []
synonym: "panicle number per plant (related)" RELATED []
synonym: "panicle number per tiller (related)" RELATED []
synonym: "PN (related)" RELATED []
synonym: "PNNB (related)" RELATED []
synonym: "seed setting tillers per plant (related)" RELATED []
synonym: "spike number (related)" RELATED []
synonym: "TP (related)" RELATED []
is_a: TO:0000847 ! panicle inflorescence morphology trait

[Term]
id: TO:0000153
name: relative yield
def: "Relative yield is calculated as a ratio of yield in stress to that of control." [Gramene:jcl, Gramene:pankaj_jaiswal]
synonym: "RELYLD (related)" RELATED []
synonym: "RY (related)" RELATED []
is_a: TO:0000371 ! yield trait

[Term]
id: TO:0000154
name: rice thrips damage response trait
def: "Causal agent: Stenchaetothrips biformis. monitored at growth stage 2-3." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "THRIPSRS (related)" RELATED []
is_a: TO:0001165 ! Thysanoptera damage response trait

[Term]
id: TO:0000155
name: drought susceptibility index
def: "The index is calculated as, DSI = (1-Yds/Yns), where Yds and Yns are mean yields of a given genotype in drought susceptible (DS) and non-susceptible (NS) environments respectively." [Gramene:jcl, Gramene:pankaj_jaiswal]
synonym: "drought score (related)" RELATED []
synonym: "drought sensitivity index (related)" RELATED []
synonym: "DRSID (related)" RELATED []
synonym: "DRSSID (related)" RELATED []
synonym: "DSI (related)" RELATED []
is_a: TO:0000188 ! drought sensitivity

[Term]
id: TO:0000156
name: penetrated root dry weight
def: "At 50 days after sowing (DAS), the dry weight of roots penetrated through the wax-petrolatum layer is measured." [Gramene:jcl, Gramene:pankaj_jaiswal]
synonym: "PENRTDWT (related)" RELATED []
synonym: "PRDW (related)" RELATED []
is_a: TO:0000078 ! root dry weight

[Term]
id: TO:0000157
name: canopy temperature
def: "Assay determines temperature of the leaf canopy." [Gramene:jcl, Gramene:pankaj_jaiswal]
synonym: "CANTMP (related)" RELATED []
is_a: TO:0000394 ! drought stress response trait

[Term]
id: TO:0000158
name: red light sensitivity
def: "Sensitivity to the red light content in the growth environment." [Gramene:pankaj_jaiswal]
synonym: "Pr light sensitivity (related)" RELATED []
synonym: "RLTSN (related)" RELATED []
is_a: TO:0000265 ! light quality response

[Term]
id: TO:0000159
name: blue light sensitivity
def: "Sensitivity response observed in an environment illuminated with blue light." [Gramene:pankaj_jaiswal]
synonym: "BLTSN (related)" RELATED []
is_a: TO:0000265 ! light quality response

[Term]
id: TO:0000160
name: UV light sensitivity
def: "Response shown by the plant in the presence of UV light stress." [Gramene:pankaj_jaiswal]
synonym: "Ultraviolet light sensitivity (related)" RELATED []
synonym: "Ultraviolet resistance (related)" RELATED []
synonym: "UV resistance (related)" RELATED []
synonym: "UVRS (related)" RELATED []
is_a: TO:0000265 ! light quality response

[Term]
id: TO:0000161
name: radiation response trait
def: "Response shown by the plant in terms of sensitivity to one or more types of radiation stress (quality and quantity of light)." [Gramene:pankaj_jaiswal]
synonym: "radiation sensitivity (related)" RELATED []
synonym: "RADSN (related)" RELATED []
synonym: "response to radiation (related)" RELATED []
is_a: TO:0000168 ! abiotic plant stress response trait

[Term]
id: TO:0000162
name: grain quality trait
alt_id: TO:0000588
def: "A fruit quality trait (TO:0002728) that is the commercial and /or economical value of the grain (i.e. fruit (PO:0009001)), or its overall improvement." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
xref: TO_GIT:209
is_a: TO:0002728 ! fruit quality trait

[Term]
id: TO:0000163
name: auxin sensitivity
def: "Response with respect to application of auxin." [Gramene:pankaj_jaiswal]
comment: The most important auxin produced by plants is indole-3-acetic acid (IAA).
synonym: "AUXSN (related)" RELATED []
synonym: "IAA response (related)" RELATED []
synonym: "IAA sensitivity (related)" RELATED []
synonym: "indole-3-acetic acid response (related)" RELATED []
synonym: "indole-3-acetic acid sensitivity (related)" RELATED []
is_a: TO:0000401 ! plant growth hormone response

[Term]
id: TO:0000164
name: plant stress response trait
def: "A plant trait (TO:0000387) which is the response of a plant structure (PO:0009011) to a plant stress (PSO:0000001)." [Gramene:pankaj_jaiswal, PO:0009011, PSO:0000001, TO:Laurel_Cooper]
comment: Plant stress traits may be manifested in either the whole plant (PO:0000003) or in parts of the plant, as a result of the exposure to either a biotic plant stress (PSO:0000011) or an abiotic plant stress (PSO:0000012). Responses to plant stresses may vary from resistance to susceptibility, with varying levels of tolerance.
synonym: "crop damage (related)" RELATED []
synonym: "stress resistance (related)" RELATED []
synonym: "stress susceptibility (related)" RELATED []
synonym: "stress tolerance (related)" RELATED []
is_a: TO:0000387 ! plant trait

[Term]
id: TO:0000165
name: panicle inflorescence exsertion
def: "A panicle inflorescence morphology trait (TO:0000847) which is the extent of coverage of panicle inflorescence (PO:0030123) by a sheath of a flag leaf (PO:0020103)." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "Exs (related)" RELATED []
synonym: "PNEX (related)" RELATED []
is_a: TO:0000847 ! panicle inflorescence morphology trait

[Term]
id: TO:0000166
name: gibberellic acid sensitivity
def: "Sensitivity to the gibberellic acid content in the growth medium or on external application." [Gramene:pankaj_jaiswal]
synonym: "GA3 response (related)" RELATED []
synonym: "GASN (related)" RELATED []
synonym: "GB response (related)" RELATED []
synonym: "gibberellic acid response (related)" RELATED []
synonym: "Gibberellin response (related)" RELATED []
is_a: TO:0000401 ! plant growth hormone response

[Term]
id: TO:0000167
name: cytokinin sensitivity
def: "Sensitivity to the cytokinin content in the growth medium or external application." [Gramene:pankaj_jaiswal]
synonym: "CKSN (related)" RELATED []
is_a: TO:0000401 ! plant growth hormone response

[Term]
id: TO:0000168
name: abiotic plant stress response trait
def: "A plant stress response trait (TO:0000164) which is the response of a plant structure (PO:0009011) to an abiotic plant stress (PSO:0000012)." [Gramene:pankaj_jaiswal, PO:0009011, PSO:0000012, TO:Laurel_Cooper]
comment: Plant abiotic stress traits may be manifested in either the whole plant (PO:0000003) or in parts of the plant, as a result of the exposure to an abiotic plant stress (PSO:0000012).  Responses to plant stresses may vary from resistance to susceptibility, with varying levels of tolerance. Abiotic stresses are those resulting from non-living factors such as drought, salinity or temperature extremes.
synonym: "abiotic stress tolerance (related)" RELATED []
is_a: TO:0000164 ! plant stress response trait

[Term]
id: TO:0000169
name: OBSOLETE chinsurah boro CMS
def: "OBSOLETE Abortion of microspore development at trinucleate stage." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "BOROCMS (related)" RELATED []
synonym: "CMS-boro (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000170
name: shoot elongation under submergence
def: "A submergence tolerance trait (TO:0000524) which is the ability of a plant to grow taller to survive flooding or submergence." [RiceSES:SES, TO:Laurel_Cooper]
synonym: "Elon (related)" RELATED []
is_a: TO:0000524 ! submergence tolerance

[Term]
id: TO:0000171
name: OBSOLETE height trait
def: "OBSOLETE. A stature and vigor trait (TO:0000133) which is the height of a whole plant (PO:0000003) or another plant structure (PO:0009011)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Refers to: height (PATO_0000119): A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension.
xref: TO_GIT:226
is_obsolete: true

[Term]
id: TO:0000172
name: jasmonic acid sensitivity
def: "Sensitivity to the jasmonic acid content in the growth medium or on external application." [Gramene:pankaj_jaiswal]
synonym: "JASN (related)" RELATED []
is_a: TO:0000401 ! plant growth hormone response

[Term]
id: TO:0000173
name: ethylene sensitivity
def: "Sensitivity to ethylene (C2H2) content in the growth medium or the environment." [Gramene:pankaj_jaiswal]
synonym: "ETHSN (related)" RELATED []
synonym: "ethylene response (related)" RELATED []
is_a: TO:0000401 ! plant growth hormone response

[Term]
id: TO:0000174
name: OBSOLETE maturity trait
def: "OBSOLETE." []
is_obsolete: true

[Term]
id: TO:0000175
name: rice bacterial blight disease resistance
def: "A bacterial blight disease resistance (TO:0000770) that is involved in the response to rice bacterial blight disease. Causal agent: Xanthomonas oryzae pv. oryzae." [Gramene:pankaj_jaiswal, RiceSES:SES]
comment: Symptoms: lesions usually start near the leaf tips or leaf margins or both, and extend down the outer edge(s). Young lesions are pale to grayish green, later turning yellow to grey (dead) with time. In very susceptible varieties, lesions may extend to the entire leaf length into the leaf sheath. Young leaves should not be inoculated for assay. Old or leaves with symptoms of nutrient deficiency or other diseases should also be avoided for inoculation.
synonym: "BB (related)" RELATED []
synonym: "BBRS (related)" RELATED []
synonym: "leaf blight (related)" RELATED []
is_a: TO:0000770 ! bacterial blight disease resistance

[Term]
id: TO:0000176
name: macronutrient response
def: "A plant nutrient response trait (TO:0000480) shown by the plant grown in either an excess or deficient amount of the macronutrient in the growth medium." [Gramene:pankaj_jaiswal]
synonym: "macronutrient deficiency (related)" RELATED []
is_a: TO:0000480 ! plant nutrient response trait

[Term]
id: TO:0000177
name: 2,4-dichlorophenoxyacetic acid sensitivity
def: "An assay to determine the tolerance exhibited by a plant or a group of plants (population) towards the applied herbicide 2,4-dichlorophenoxyacetic acid (2,4 D)." [Gramene:pankaj_jaiswal]
comment: It is expected that the herbicide application must not affect the agronomic yield, if any.
synonym: "2,4 D sensitivity (related)" RELATED []
synonym: "24DSN (related)" RELATED []
xref: PECO:0007180
is_a: TO:0000058 ! herbicide sensitivity

[Term]
id: TO:0000178
name: acid soil sensitivity
def: "Plant sensitivity to soils with acidic conditions (pH<7)." [Gramene:pankaj_jaiswal, TO:moorel]
is_a: TO:0000479 ! acid sensitivity

[Term]
id: TO:0000179
name: biotic plant stress trait
def: "A plant stress response trait (TO:0000164) which is the response of a plant structure (PO:0009011) to biotic plant stress (PSO:0000011)." [Gramene:pankaj_jaiswal, PO:0009011, PSO:0000011, TO:Laurel_Cooper]
comment: Plant biotic stress traits may be manifested in either the whole plant (PO:0000003) or in parts of the plant, as a result of the exposure to a biotic plant stress (PSO:0000011). Responses to biotic plant stresses may vary from resistance to susceptibility, with varying levels of tolerance. Biotic stresses are those resulting from living factors such as microorganisms, animals (including insects, arachnids and nematodes) or other plants.
is_a: TO:0000164 ! plant stress response trait

[Term]
id: TO:0000180
name: spikelet fertility
def: "A spikelet morphology trait (TO:0000657) which is the fertility to a spikelet (PO:0009051)." [Gramene:pankaj_jaiswal, PO:0009051, RiceSES:SES, TO:moorel]
comment: Determined by percent of spikelets with grains identified by pressing the spikelets with the fingers and counting those that have no grains or the percent seed setting.\nRefer to fertility (PATO:0000274): A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction.
synonym: "percent sterility (related)" RELATED []
synonym: "seed setting (related)" RELATED []
synonym: "SpFert (related)" RELATED []
synonym: "SPKFRT (related)" RELATED []
is_a: TO:0000657 ! spikelet morphology trait

[Term]
id: TO:0000181
name: seed weight
def: "A seed morphology trait (TO:0000184) which is the weight of a seed (PO:0009010)." [Gramene:pankaj_jaiswal, PO:0009010, TO:moorel]
comment: Seed weight is a component of seed yield (TO:0000905) and seed quality (TO:0000162). Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body.
synonym: "SDWT (exact)" EXACT []
xref: TO_GIT:196
is_a: TO:0000184 ! seed morphology trait

[Term]
id: TO:0000182
name: insecticide sensitivity
def: "The tolerance exhibited by a plant or a group of plants (population) towards the applied insecticide." [TO:moorel]
synonym: "insecticide tolerance (related)" RELATED []
is_a: TO:0002649 ! pesticide response

[Term]
id: TO:0000183
name: OBSOLETE other miscellaneous trait
def: "OBSOLETE The trait instances, which either cannot be assigned any of the eight top level parent terms such as biochemical, anatomy, development quality, stature/vigor, sterility/fertility, stress and the yield or are yet to be assigned a parent." [Gramene:pankaj_jaiswal]
is_obsolete: true

[Term]
id: TO:0000184
name: seed morphology trait
def: "A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a seed (PO:0009010)." [Gramene:pankaj_jaiswal, PO:0009010, TO:moorel]
is_a: TO:0000836 ! multi-tissue plant structure morphology trait

[Term]
id: TO:0000185
name: stigma color
def: "Color of the stigma in a blossoming flower." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "SgC (related)" RELATED []
synonym: "STICL (related)" RELATED []
is_a: TO:0006012 ! carpel morphology trait

[Term]
id: TO:0000186
name: OBSOLETE environmental stress related trait
def: "OBSOLETE." []
is_obsolete: true

[Term]
id: TO:0000187
name: anther color
def: "An anther morphology trait (TO:1000022) which is the color (PATO:0000014) of an anther (PO:0009066)" [TO:austin_meier]
synonym: "ANTCL (related)" RELATED []
xref: TO_GIT:385
is_a: PATO:0000014 {is_inferred="true"} ! color
is_a: TO:1000022 {is_inferred="true"} ! anther morphology trait
relationship: inheres_in PO:0009066 {is_inferred="true"} ! anther

[Term]
id: TO:0000188
name: drought sensitivity
def: "Drought sensitivity is highly interactive with crop phenology, plant growth prior to stress, and timing, duration, and intensity of drought stress. For many soils, it takes at least 2 rainless weeks to cause marked differences in drought sensitivity during the vegetative stage and at least 7 rainless days during the reproductive stage to cause severe drought injury. Leaf rolling precedes leaf drying during drought. Repeated ratings are recommended through progress of the drought." [RiceSES:SES]
synonym: "drought susceptibility (related)" RELATED []
synonym: "DRS (related)" RELATED []
synonym: "DRSN (related)" RELATED []
is_a: TO:0000394 ! drought stress response trait

[Term]
id: TO:0000189
name: embryoless seed
def: "A seed viability trait (TO:0000345) which is the absence of a plant embryo (PO:0009009) in a seed (PO:0009010)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "germless (related)" RELATED []
is_a: TO:0000345 ! seed viability

[Term]
id: TO:0000190
name: seed coat color
def: "A seed coat morphology trait (TO:0000838) which is the color of the seed coat (PO:0009088)." [Gramene:pankaj_jaiswal, PO:0009088, RiceSES:SES, TO:moorel]
comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
synonym: "bran color (related)" RELATED []
synonym: "SCC (related)" RELATED []
synonym: "SDCCL (related)" RELATED []
xref: PATO:0000014
is_a: TO:0000838 ! seed coat morphology trait
relationship: part_of TO:0000486 ! seed color
relationship: part_of TO:0000931 ! seed quality trait

[Term]
id: TO:0000191
name: rice hispa beetle response
def: "A Coleoptera damage response trait (TO:0001160) which is caused by the rice hispa beetle (Dicladispa armigera)." [Gramene:pankaj_jaiswal, NCBITaxon:111238, TO:Laurel_Cooper]
synonym: "HISPRS (related)" RELATED []
is_a: TO:0001160 ! Coleoptera damage response trait

[Term]
id: TO:0000193
name: plant embryo shape
def: "A plant embryo morphology trait (TO:0000064) which is the shape of a plant embryo (PO:0009009)." [PO:0009009, TO:moorel]
comment: Refer to shape PATO:0000052:A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
xref: PATO:0000052
xref: TO_GIT:140
is_a: TO:0000064 ! plant embryo morphology trait

[Term]
id: TO:0000194
name: globular embryo
def: "An embryo shape trait (TO:0000193) which is a globular plant embryo (PO:0009009)." [PO:0009009, TO:moorel]
comment: Refer to globular (PATO:0001499): A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter).
xref: PATO:0001499
is_a: TO:0000193 ! plant embryo shape

[Term]
id: TO:0000195
name: shootless embryo
def: "A plant embryo morphology trait (TO:0000064) which is an embryo of the germinating seed not producing a shoot." [Gramene:pankaj_jaiswal, TO:moorel]
synonym: "SHMIN (related)" RELATED []
is_a: TO:0000064 ! plant embryo morphology trait
is_a: TO:0000620 ! plant embryo development trait

[Term]
id: TO:0000196
name: amylose content
def: "A polysaccharide content trait (TO:0006007) which is the amount of amylose (CHEBI:28102) in a plant structure (PO:0009011)." [ISBN:198506732, RiceSES:SES]
comment: Amylose is a helical polymer made of α-D-glucose units, bound to each other through α(1→4) glycosidic bonds. This polysaccharide is one of the two components of starch, making up approximately 20-30% of the structure. The other component is amylopectin, which makes up 70–80% of the structure. (REF: Wikipedia)
synonym: "Amy (related)" RELATED []
synonym: "AMYCN (related)" RELATED []
xref: CHEBI:28102
is_a: TO:0006007 ! polysaccharide content
relationship: part_of TO:0001166 ! starch quality trait

[Term]
id: TO:0000197
name: ligule color
def: "A ligule morphology trait (TO:0002748) which is the color of a ligule (PO:0020105)." [Gramene:pankaj_jaiswal, PO:0020105, RiceSES:SES, TO:Laurel_Cooper]
comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
synonym: "LgC (related)" RELATED []
synonym: "LIGCL (related)" RELATED []
xref: PATO:0000014
is_a: TO:0002748 ! ligule morphology trait

[Term]
id: TO:0000198
name: rootless
def: "A root number trait (TO:0000084) which is the absence of roots in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
synonym: "RTMIN (related)" RELATED []

[Term]
id: TO:0000199
name: OBSOLETE genic male sterility
def: "OBSOLETE" []
synonym: "GMS (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000200
name: brittle culm
def: "A stem strength (TO:0000051) trait which a measure of the fragility of a grass stem (culm; PO:0009047)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
is_a: TO:0000051 ! stem strength

[Term]
id: TO:0000201
name: panicle inflorescence color
def: "A panicle inflorescence morphology trait (TO:0000847) which is the variation in color of the panicle inflorescence (PO:0030123)." [Gramene:pankaj_jaiswal]
comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
synonym: "PNCL (related)" RELATED []
xref: PATO:0000014
is_a: TO:0000847 ! panicle inflorescence morphology trait

[Term]
id: TO:0000202
name: germination ratio
def: "Ratio of germinated to non-germinated seeds." [Gramene:pankaj_jaiswal]
synonym: "GERMRO (related)" RELATED []
is_a: TO:0000250 ! plant vigor trait
is_a: TO:0000931 ! seed quality trait

[Term]
id: TO:0000203
name: rice bacterial leaf streak disease resistance
def: "Causal agent: Xanthomonas oryzae pv. oryzicola." [Gramene:pankaj_jaiswal, RiceSES:SES]
comment: Symptoms: linear lesions with small bacterial exudates evident. This scale may also be used for leaf smut caused by Entyloma oryzae.
synonym: "BLS (related)" RELATED []
synonym: "BLSRS (related)" RELATED []
is_a: TO:0000315 ! bacterial disease response

[Term]
id: TO:0000204
name: rice seedling blight disease resistance
def: "A rice bacterial blight disease resistance (TO:0000175) that is involved in the response to rice bacterial blight disease, on a seedling. Causal agent: Xanthomonas oryzae pv. oryzae." [Gramene:pankaj_jaiswal, RiceSES:SES]
comment: Symptoms: lesions usually start near the leaf tips or leaf margins or both, and extend down the outer edge(s). Young lesions are pale to grayish green, later turning yellow to grey (dead) with time. In very susceptible varieties, lesions may extend to the entire leaf length into the leaf sheath. Kresek or seedling blight causes wilting and death of plant.
synonym: "kresek (related)" RELATED []
synonym: "leaf blight (related)" RELATED []
synonym: "SDLBTRS (related)" RELATED []
is_a: TO:0000175 ! rice bacterial blight disease resistance

[Term]
id: TO:0000205
name: white-backed planthopper response trait
def: "A Hemiptera damage response trait (TO:0001164) caused by a white-backed planthopper (Sogatella furcifera)." [Gramene:pankaj_jaiswal, NCBITaxon:113103, RiceSES:SES, TO:Laurel_Cooper]
comment: Symptoms include partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting and death of plants.
synonym: "WBPH (related)" RELATED []
synonym: "WBPHRS (related)" RELATED []
is_a: TO:0001164 ! Hemiptera damage response trait

[Term]
id: TO:0000206
name: leaf angle
def: "A leaf attitude (TO:0000206) which is  the angle of a leaf (PO:0025034) measured against the stem." [RiceSES:SES, TO:Laurel_Cooper]
comment: In rice, it is measured against the culm on the leaf below the flag leaf. Refer to angle value (PATO:0000602).
synonym: "LBP (related)" RELATED []
synonym: "LFAG (related)" RELATED []
xref: PATO:0000602
is_a: TO:0000824 ! leaf attitude
created_by: jaiswalp

[Term]
id: TO:0000207
name: plant height
def: "A whole plant morphology trait (TO:0000398) which is the height of a whole plant (PO:0000003)." [PO:0000003, RiceSES:SES, TO:Laurel_Cooper]
comment: Comment: Refers to: height (PATO_0000119): A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension.
synonym: "Ht (related)" RELATED []
synonym: "PTHT (related)" RELATED []
synonym: "shoot height (related)" RELATED []
xref: PATO:0000119
xref: TO_GIT:367
xref: TO_GIT:84
is_a: TO:0000398 ! whole plant morphology trait
relationship: part_of TO:1000012 ! whole plant size

[Term]
id: TO:0000208
name: lemma number
def: "A spikelet floret morphology trait (TO:0000274) which is the number of lemma (PO:0009037) in a spikelet floret (PO:0009082)." [Gramene:pankaj_jaiswal, PATO:0001555, PO:0009037, PO:0009082, TO:Laurel_Cooper, TO:moorel]
is_a: TO:0000274 ! spikelet floret morphology trait
relationship: inheres_in PO:0009037 {is_inferred="true"} ! lemma

[Term]
id: TO:0000209
name: palea number
def: "A spikelet floret morphology trait (TO:0000274) which is the number of  palea (PO:0009038) in a spikelet floret (PO:0009082)." [Gramene:pankaj_jaiswal, PATO:0001555, PO:0009038, PO:0009082, TO:Laurel_Cooper, TO:moorel]
synonym: "PALNB (related)" RELATED []
is_a: TO:0000274 ! spikelet floret morphology trait
relationship: inheres_in PO:0009038 {is_inferred="true"} ! palea

[Term]
id: TO:0000210
name: anther number
def: "A stamen morphology trait (TO:0000215) which is the number of anthers (PO:0009066) in a stamen (PO:0009029)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "ANTNB (related)" RELATED []
xref: TO_GIT:387
is_a: TO:0000215 ! stamen morphology trait
relationship: inheres_in PO:0009066 {is_inferred="true"} ! anther
relationship: part_of TO:0000225 ! stamen number

[Term]
id: TO:0000211
name: starch gel consistency
def: "A starch gelatinization trait (TO:0001167) which is the texture, firmness, and flow properties of a starch." [RiceSES:SES, TO:Laurel_Cooper]
synonym: "GelC (related)" RELATED []
synonym: "GELCON (related)" RELATED []
is_a: TO:0001167 ! starch gelatinization trait

[Term]
id: TO:0000212
name: green leafhopper response trait
def: "A Hemiptera damage response trait (TO:0001164) caused by a green leafhopper (Nephotettix spp.)." [Gramene:pankaj_jaiswal, NCBITaxon:94399, RiceSES:SES, TO:Laurel_Cooper]
comment: Green leafhopper is the major vector for transmitting the Tungro virus disease (TO:0000413). Symptoms include partial to pronounced yellowing and increasing severity of stunting. Extreme signs range from wilting to death of plants. Infected areas in the field may be patchy.
synonym: "GLFHRS (related)" RELATED []
synonym: "GLH (related)" RELATED []
is_a: TO:0001164 ! Hemiptera damage response trait

[Term]
id: TO:0000213
name: rice grassy stunt 1 and 2 virus resistance
def: "Causal agent: rice grassy stunt virus 1 (RGSV1) and rice grassy stunt virus 2 (RGSV2). Symptoms: RGSV1 causes severe stunting, excessive tillering, pale green to yellow and narrow leaves with small rusty spots. RGSV2 causes severe stunting, excessive tillering, yellow to orange and narrow leaves with small rusty spots." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "RGSVRS (related)" RELATED []
is_a: TO:0000148 ! viral disease response trait

[Term]
id: TO:0000214
name: anther shape
def: "An anther morphology trait (TO:1000022) which is the shape (PATO:0000052) of an anther (PO:0009066)." [TO:ethan_johnson]
comment: Refers to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
synonym: "ANTSHP (related)" RELATED []
xref: TO_GIT:385
is_a: PATO:0000052 {is_inferred="true"} ! shape
is_a: TO:1000022 {is_inferred="true"} ! anther morphology trait
relationship: inheres_in PO:0009066 {is_inferred="true"} ! anther

[Term]
id: TO:0000215
name: stamen morphology trait
def: "A microsporophyll morphology trait (TO:0000868) which is a quality of a stamen (PO:0009029)." [Gramene:pankaj_jaiswal, PO:0009029, TO:moorel]
synonym: "stamen related trait (related)" RELATED []
is_a: TO:0000868 ! microsporophyll morphology trait

[Term]
id: TO:0000216
name: OBSOLETE grassy stunt virus disease
def: "OBSOLETE." []
is_obsolete: true

[Term]
id: TO:0000217
name: OBSOLETE genic male sterility-thermo-photoperiod sensitive
def: "OBSOLETE  Male sterility affected by both temperature and photoperiod." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "thermo-photoperiod sensitive genic male sterility (related)" RELATED []
synonym: "TPGMS (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000218
name: pollen abortion type
def: "Observations are made on staining behavior and number of nuclei in most of the pollen." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "abortion pattern (related)" RELATED []
synonym: "abortion pattern of male sterile lines (related)" RELATED []
is_a: TO:0000437 ! plant male sterility

[Term]
id: TO:0000219
name: OBSOLETE stem morphology
def: "OBSOLETE." []
synonym: "culm morphology (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000220
name: rice bug response trait
def: "A Hemiptera damage response trait (TO:0001164) caused by a rice bug (Leptocorisa oratorius)." [Gramene:pankaj_jaiswal, NCBITaxon:2724160, RiceSES:SES, TO:Laurel_Cooper]
comment: Damage is monitored at growth stage 7-9, response is a measure of damaged grains per panicle.
synonym: "BUGRS (related)" RELATED []
synonym: "RB (related)" RELATED []
is_a: TO:0001164 ! Hemiptera damage response trait

[Term]
id: TO:0000221
name: glume color
def: "A glume morphology trait (TO:0000869) which is the color of a glume (PO:0009039)." [Gramene:pankaj_jaiswal, PO:0009039, TO:moorel]
comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
synonym: "GLCL (related)" RELATED []
synonym: "glume discoloration (related)" RELATED []
synonym: "glume pigmentation (related)" RELATED []
synonym: "pigmentation of glume (related)" RELATED []
xref: PATO:0000014
is_a: TO:0000869 ! glume morphology trait

[Term]
id: TO:0000222
name: head rice yield
def: "A grain yield trait (TO:0000396) which is the amount of whole (3/4 of original length or longer) milled kernels separated from the total amount of milled rice." [https://ricecap.hosted.uark.edu/glossary_ricecaplist.htm#H, TO:Laurel_Cooper]
comment: Depending on the grain type, whole milled kernels are spearated using special sized screens. The weight of whole milled kernels or head rice is expressed as a percentage of the original rough rice sample.
synonym: "head milled rice (related)" RELATED []
synonym: "head rice ratio (related)" RELATED []
synonym: "HEADR (related)" RELATED []
xref: TO_GIT:422
is_a: TO:0000396 ! grain yield trait
relationship: part_of TO:0000144 ! milled rice yield

[Term]
id: TO:0000223
name: pistil morphology trait
def: "A carpel morphology trait (TO:0006012) which is a quality of a pistil." [Gramene:pankaj_jaiswal, TO:moorel]
synonym: "pistil related trait   (related)" RELATED []
is_a: TO:0006012 ! carpel morphology trait

[Term]
id: TO:0000224
name: iron sensitivity
def: "Sensitivity to the iron ion content in the growth medium. It is important for synthesis of chlorophyll and some enzyme activities." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "FESN (related)" RELATED []
synonym: "FeTox (related)" RELATED []
synonym: "iron toxicity (related)" RELATED []
is_a: TO:0000080 ! micronutrient response

[Term]
id: TO:0000225
name: stamen number
def: "An androecium morphology trait (TO:0000215) which is the number of stamens (PO:0009029) present in an androecium (PO:0009061)." [Gramene:pankaj_jaiswal, PO:0009029, PO:0009049, TO:austin_meier, TO:moorel]
synonym: "STANB (related)" RELATED []
xref: TO_GIT:386
is_a: TO:0000994 ! androecium morphology trait

[Term]
id: TO:0000226
name: auricleless
def: "A measure of either the absence of auricle or the length of auricle being zero." [Gramene:pankaj_jaiswal]
synonym: "AUMIN (related)" RELATED []
synonym: "auricle absence (exact)" EXACT []
synonym: "auricle absent (exact)" EXACT []
is_a: TO:0000655 ! leaf growth and development trait
is_a: TO:0002717 ! leaf sheath auricle morphology trait

[Term]
id: TO:0000227
name: root length
def: "A root morphology trait (TO:0000043) which is the length of a root (PO:0009005)." [GR:pj, Gramene:jcl, TO:austin_meier, TO:Laurel_Cooper]
comment: refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.
synonym: "maximum root depth (related)" RELATED []
synonym: "maximum root length (related)" RELATED []
synonym: "MRD (related)" RELATED []
synonym: "MRL (related)" RELATED []
synonym: "RTLG (related)" RELATED []
xref: PATO:0000122
xref: TO_GIT:365
is_a: TO:0000043 ! root morphology trait

[Term]
id: TO:0000228
name: moisture content trait
def: "A plant quality trait (TO:0000597) which is the amount of moisture in a plant structure (PO:0009011)." [TO:Laurel_Cooper]
is_a: TO:0000597 ! plant quality trait

[Term]
id: TO:0000229
name: photoperiod sensitivity trait
def: "Sensitivity response on the plant development and the related growth stages by the duration of light, to which the plant has been exposed." [Gramene:pankaj_jaiswal]
synonym: "PPDSN (related)" RELATED []
is_a: TO:0000075 ! light reponse trait

[Term]
id: TO:0000230
name: crown rootless
def: "Absence of crown roots in the plant." [Gramene:pankaj_jaiswal]
synonym: "CWRTMIN (related)" RELATED []
is_a: TO:0000198 ! rootless
is_a: TO:0002685 ! crown root number

[Term]
id: TO:0000231
name: endospermless
def: "An endosperm morphology trait (TO:0000575) which is the absence of endosperm (PO:0009089) in the seed (PO:0009010) or grain." [Gramene:pankaj_jaiswal, PO:0009010, PO:0009089, TO:moorel]
comment: This is also an endosperm quality trait (TO:0000587).
synonym: "ENDMIN (related)" RELATED []
xref: TO_GIT:133
is_a: TO:0000575 ! endosperm morphology trait
is_a: TO:0000587 ! endosperm quality

[Term]
id: TO:0000232
name: OBSOLETE rice cytoplasmic male sterility
def: "OBSOLETE Caused by the interaction of cytoplasmic (mitochondrial) and nuclear genomes. The trait shows non-mendelian inheritance or maternal inheritance." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "CMS (related)" RELATED []
synonym: "cytoplasmic male sterility (sensu Oryza) (exact)" EXACT []
is_obsolete: true

[Term]
id: TO:0000233
name: root volume
def: "A root morphology trait (TO:0000043) which is the volume of a root (PO:0009005)." [GR_REF:6917, Gramene:pankaj_jaiswal]
comment: Root volume is an indirect measure of root mass or density and can be quantified by water displacement method, in cubic centimeters.
synonym: "RTVOL (related)" RELATED []
is_a: TO:0000043 ! root morphology trait

[Term]
id: TO:0000234
name: radicleless
def: "The embryo of the germinating seed does not produce roots." [Gramene:pankaj_jaiswal]
is_a: TO:0000198 ! rootless

[Term]
id: TO:0000235
name: liguleless
def: "A ligule morphology trait (TO:0002748) which is the absence of a ligule (PO:0020105)." [Gramene:pankaj_jaiswal, PO:0020105, TO:Laurel_Cooper]
comment: Refer to absent (PATO:0000462): A quality denoting the lack of an entity.
synonym: "LIGMIN (related)" RELATED []
xref: PATO:0000462
is_a: TO:0002748 ! ligule morphology trait

[Term]
id: TO:0000236
name: OBSOLETE crop damage resistance
def: "OBSOLETE" []
synonym: "crop damage resistance trait (exact)" EXACT []
is_obsolete: true

[Term]
id: TO:0000237
name: water stress response trait
def: "An abiotic plant stress response trait (TO:0000168) which is the response of a plant structure (PO:0009011) to water stress (too little or too much water)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
is_a: TO:0000168 ! abiotic plant stress response trait

[Term]
id: TO:0000238
name: OBSOLETE growth media composition response
def: "OBSOLETE A chemical stress response (TO:0000238) which is the response by a plant to a specific component of the growth medium." [TO:Laurel_Cooper, TO:moorel]
synonym: "edaphic (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000239
name: OBSOLETE plant genetic trait unknown
def: "OBSOLETE." []
is_obsolete: true

[Term]
id: TO:0000240
name: sterile lemma length
def: "A lemma morphology trait (TO:1000023) which is the length of a sterile lemma (PO:0009040)." [PATO:0000122, PO:0009040, RiceSES:SES, TO:Laurel_Cooper, TO:moorel]
comment: Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points.
synonym: "SLmL (related)" RELATED []
synonym: "STLEMLG (related)" RELATED []
xref: TO_GIT:390
is_a: TO:1000023 ! lemma morphology trait

[Term]
id: TO:0000241
name: leaf number
def: "A shoot system morphology trait (TO:0000077) which is the number of leaves (PO:0025034) in a shoot system (PO:0009006) of a plant." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "LFNB (related)" RELATED []
is_a: TO:0000077 ! shoot system morphology trait

[Term]
id: TO:0000242
name: OBSOLETE microbial damage resistance
def: "OBSOLETE Response by the plant in terms of resistivity or sensitivity to microbes." [Gramene:pankaj_jaiswal]
is_obsolete: true

[Term]
id: TO:0000243
name: in vitro regeneration ability
def: "A plant vigor trait (TO:0000250) which is the capacity of plant cells, tissues, or organs, when cultured in a controlled, artificial environment, to develop into new, complete plants." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "INVRAB (related)" RELATED []
is_a: TO:0000250 ! plant vigor trait

[Term]
id: TO:0000244
name: coleoptile color
def: "A coleoptile morphology trait (TO:0000753) which is the the color of a coleoptile (PO:0020033)." [Gramene:pankaj_jaiswal, PO:0020033, TO:Laurel_Cooper]
synonym: "COLCL (related)" RELATED []
xref: PATO:0000014
xref: TO_GIT:62
is_a: TO:0000753 ! coleoptile morphology trait

[Term]
id: TO:0000245
name: pollen free
def: "No pollen development." [Gramene:pankaj_jaiswal, RiceSES:SES]
comment: An example is rice TGMS line Norin PL12.
is_a: TO:0000218 ! pollen abortion type

[Term]
id: TO:0000246
name: rice delphacid response trait
def: "A Hemiptera damage response trait (TO:0001164) caused by a rice delphacid bug (Tagosodes orizicolus)." [Gramene:pankaj_jaiswal, RiceSES:SES]
comment: Symptoms include partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting and death of plants. Formerly called Sogatodes oryzicola.
synonym: "DELRS (related)" RELATED []
synonym: "RDel (related)" RELATED []
is_a: TO:0001164 ! Hemiptera damage response trait

[Term]
id: TO:0000247
name: OBSOLETE other nutrient sensitivity
def: "OBSOLETE" []
is_obsolete: true

[Term]
id: TO:0000248
name: primary macronutrient sensitivity
def: "A macronutrient sensitivity (TO:0000176) response shown by the plant either grown in an excess or deficient amount of the primary macronutrient in the growth medium." [TO:moorel]
is_a: TO:0000176 ! macronutrient response

[Term]
id: TO:0000249
name: leaf senescence trait
def: "A measure of aging of leaf." [RiceSES:SES]
comment: Rapid senescence of leaves can be detrimental to yield. Can be measured by loss of normal leaf color. In triticeae it is often measured on the flag or the second from top leaf.
synonym: "Foilar senescence (related)" RELATED []
synonym: "LFSNS (related)" RELATED []
synonym: "Sen (related)" RELATED []
is_a: TO:0000655 ! leaf growth and development trait

[Term]
id: TO:0000250
name: plant vigor trait
def: "A plant trait (TO:0000387) which is a measure of the active and/or healthy growth and development of a plant stucture (PO:0009011) or a population of plants." [TO:Laurel_Cooper]
comment: Plants vigor traits include those of a whole plant (PO:00009011; inclucluding a seedling), or parts of the plant such as a seed (PO:0009010), or of explants such as anthers (PO:0009066) or cuttings.
synonym: "plant vigour trait (exact)" EXACT []
is_a: TO:0000387 ! plant trait

[Term]
id: TO:0000251
name: secondary macronutrient sensitivity
def: "A macronutrient sensitivity (TO:0000176) response shown by the plant either grown in an excess or deficient amount of the secondary macronutrient in the growth medium." [TO:moorel]
is_a: TO:0000176 ! macronutrient response

[Term]
id: TO:0000252
name: OBSOLETE non-mineral nutrient sensitivity
def: "OBSOLETE A plant nutrient response trait (TO:0000480) shown by the plant grown in either the excess or deficient amount of the non-mineral nutrients in the growth medium. These nutrients are found in the air and water." [Gramene:pankaj_jaiswal]
is_obsolete: true

[Term]
id: TO:0000253
name: seed dormancy
def: "A seed growth and development trait (TO:0000653) where a seed (PO:0009010) remains in a state of quiescence or dormancy (GO:0022611)." []
synonym: "SDDOR (related)" RELATED []
is_a: TO:0000653 ! seed growth and development trait
relationship: part_of TO:0001159 ! grain dormancy

[Term]
id: TO:0000254
name: response to pH
def: "A chemical stress response trait (TO:0000482) which is the response of the plant to the pH of the growth enviroment." [Gramene:pankaj_jaiswal, TO:moorel]
synonym: "soil pH stress (related)" RELATED []
is_a: TO:0000482 ! chemical stress response

[Term]
id: TO:0000255
name: rice leaf sheath blight disease response
def: "A Basidiomycete fungal disease response trait (TO:0001146) which is caused by Rhizoctonia solani (PECO:0007379) exposure." [NCBITaxon:107832, RiceSES:SES, TO:Laurel_Cooper]
comment: Causal agent: 'Rhizoctonia solani J.G. Kühn, 1858' (NCBITaxon:456999) is known as 'Thanatephorus cucumeris (A.B. Frank) Donk' (NCBITaxon:107832) in the telomorph phase.\nSymptoms: Grayish-green lesions may enlarge and coalesce with other lesions, mostly on lower leaf sheaths, but occasionally on the leaves (RiceSES:SES).
synonym: "ShB (related)" RELATED []
synonym: "SHBTRS (related)" RELATED []
xref: TO_GIT:67
is_a: TO:0001146 ! Basidiomycete fungal disease response

[Term]
id: TO:0000256
name: OBSOLETE genetic trait
def: "OBSOLETE. A genetic trait is a distinguishable feature or a characteristic or a quality of character or a phenotypic feature of a developing or developed individual that is linked to a physical or genetic marker" [Gramene:pankaj_jaiswal]
is_obsolete: true

[Term]
id: TO:0000257
name: root branching
def: "The extent of the root branching as determined under variable treatments and environments." [Gramene:pankaj_jaiswal]
synonym: "rbr (related)" RELATED []
synonym: "RTBR (related)" RELATED []
is_a: TO:0000043 ! root morphology trait

[Term]
id: TO:0000258
name: leaf thickness
def: "A leaf morphology trait (TO:0000748) which is the thickness of a leaf (PO:0025034)." [PO:0025034, TO:moorel]
comment: Refers to thickness PATO:0000915 A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
xref: PATO:0000915
is_a: TO:0000748 ! leaf morphology trait
relationship: part_of TO:0002637 ! leaf size

[Term]
id: TO:0000259
name: high temperature stress response
def: "A temperature stress response trait (TO:0000432) which is the response to warmer than normal growth conditions." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "HTol (related)" RELATED []
is_a: TO:0000432 ! temperature stress response trait

[Term]
id: TO:0000260
name: bird damage response trait
def: "An animal damage response trait (TO:0000054) which is the response to damage to a plant structure (PO:0009011) caused by a bird (NCBITaxon:8782)." [Gramene:pankaj_jaiswal, NCBITaxon:8782, PO:0009011, RiceSES:SES, TO:Laurel_Cooper]
comment: Factors such as flag leaf angle (TO:0000124) or panicle exsertion (TO:0000165) are important in the resistance of the plant to bird damage.
synonym: "BD (related)" RELATED []
is_a: TO:0000054 ! animal damage response trait

[Term]
id: TO:0000261
name: insect damage response trait
def: "An animal damage response trait (TO:0000054) which is the response to damage to a plant structure (PO:0009011) caused by an insect (NCBITaxon:6960)." [Gramene:pankaj_jaiswal, NCBITaxon:6960, PO:0009011, RiceSES:SES, TO:Laurel_Cooper]
synonym: "insect resistance (narrow)" NARROW []
is_a: TO:0000054 ! animal damage response trait
created_by: jaiswalp

[Term]
id: TO:0000262
name: panicle inflorescence shape
def: "A panicle inflorescence morphology trait (TO:0000847) which is the shape of a panicle inflorescence (PO:0030123)." [Gramene:pankaj_jaiswal]
comment: Refer to shape PATO:0000052:A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
xref: PATO:0000052
is_a: TO:0000847 ! panicle inflorescence morphology trait

[Term]
id: TO:0000264
name: lemma and palea color
def: "A lemma and palea morphology trait (TO:0000079) which is the color of the lemma (PO:0009037) and the palea (PO:0009038)." [Gramene:pankaj_jaiswal, PO:0009037, PO:0009038, RiceSES:SES, TO:moorel]
comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
synonym: "LEMCL (related)" RELATED []
synonym: "Lemma color (related)" RELATED []
synonym: "LEMPALCL (related)" RELATED []
synonym: "LmPC (related)" RELATED []
synonym: "PALCL (related)" RELATED []
synonym: "palea color (related)" RELATED []
xref: PATO:0000014
is_a: TO:0000079 ! flower bract morphology trait
relationship: part_of TO:0000536 ! spikelet floret color

[Term]
id: TO:0000265
name: light quality response
def: "A light response trait (TO:0000075) which is determined by the light quality." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Light quality is defined by the wavelength of the light type.
synonym: "sensitivity to light quality (related)" RELATED []
is_a: TO:0000075 ! light reponse trait

[Term]
id: TO:0000266
name: chalky endosperm
def: "An endosperm morphology trait (TO:0000575) which is the chalkiness of an endosperm (PO:0009089) on the scale of (a) white belly, (b) white center or (c) white back." [Gramene:pankaj_jaiswal, RiceSES:SES, TO:moorel]
comment: This is also an endosperm quality trait (TO:0000587).
synonym: "CHALK (related)" RELATED []
synonym: "chalkiness of endosperm (related)" RELATED []
synonym: "Clk (related)" RELATED []
xref: TO_GIT:133
is_a: TO:0000575 ! endosperm morphology trait
relationship: part_of TO:0000587 ! endosperm quality

[Term]
id: TO:0000267
name: inflorescence type
alt_id: TO:0000500
def: "An inflorescence morphology trait (TO:0000373) which is the variation in the type of inflorescence, whether due to extent and number of branching, branch angles or modified form of the inflorescence (PO:0009049)." [Gramene:pankaj_jaiswal, PO:0009049, TO:moorel]
synonym: "inflorescence type (related)" RELATED []
synonym: "INFLOTYPE (exact)" EXACT []
is_a: TO:0000373 ! inflorescence morphology trait

[Term]
id: TO:0000268
name: inflorescence shape
def: "An inflorescence morphology trait (TO:0000373) which is the shape of an inflorescence (PO:0009049)." [Gramene:pankaj_jaiswal, PO:0009049, TO:Laurel_Cooper]
comment: Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
synonym: "head shape (narrow)" NARROW []
xref: PATO:0000052
xref: TO_GIT:92
xref: TO_GIT:97
is_a: TO:0000373 ! inflorescence morphology trait

[Term]
id: TO:0000269
name: 100-grain weight
alt_id: TO:0000518
def: "A grain weight (TO:0000919) which is the weight of a sample of 100 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000)." [Gramene:pankaj_jaiswal, RiceSES:SES, TO:Laurel_Cooper]
comment: Hundred grain weights are measured in grams, on a precision balance on 100 well-developed whole grains (with the caryopsis hull; PO:0006000), dried to 13% moisture content.
synonym: "100-grain weight (exact)" EXACT []
synonym: "HGRWT (exact)" EXACT []
synonym: "HSDWT (related)" RELATED []
synonym: "hundred grain weight (exact)" EXACT []
synonym: "hundred seed weight (related)" RELATED []
is_a: TO:0000919 ! grain weight

[Term]
id: TO:0000270
name: inflorescence axis angle
def: "An inflorescence axis morphology trait (TO:0000782) which is the angle of an inflorescence axis (PO:0020122)." [Gramene:pankaj_jaiswal, PO:0020122, TO:Laurel_Cooper]
comment: Refers to the angle ((PATO:0002326): An orientation inhering in a bearer by virtue of the bearer's placement at an angle) of an inflorescence axis (PO:0020122).
xref: PATO:0002326
is_a: TO:0000782 ! inflorescence axis morphology trait

[Term]
id: TO:0000271
name: inflorescence length
def: "An inflorescence morphology trait (TO:0000373) trait which is the length of an inflorescence (PO:0009049)." [TO:Laurel_Cooper]
is_a: TO:0000373 ! inflorescence morphology trait
relationship: part_of TO:0006031 ! inflorescence size

[Term]
id: TO:0000272
name: OBSOLETE plant survivability
def: "OBSOLETE." []
is_obsolete: true

[Term]
id: TO:0000273
name: armyworm response trait
def: "A Lepidoptera damage response trait (TO:0001162) which is caused by a true armyworm (Mythimna unipuncta)." [Gramene:pankaj_jaiswal, https://ipm.ucanr.edu/agriculture/rice/armyworms/#gsc.tab=0, NCBITaxon:103831, TO:Laurel_Cooper]
comment: The swarming caterpillars cause severe damage to rice plants in nursery beds.
synonym: "AWRRS (related)" RELATED []
is_a: TO:0001162 ! Lepidoptera damage response trait

[Term]
id: TO:0000274
name: spikelet floret morphology trait
def: "A flower morphology trait (TO:0000499) which is a quality of a spikelet floret (PO:0009082)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper, TO:moorel]
synonym: "floret related trait (related)" RELATED []
xref: TO_GIT:105
is_a: TO:0000499 ! flower morphology trait

[Term]
id: TO:0000275
name: perianth morphology trait
def: "A collective phyllome structure morphology trait (TO:0000845) which is a quality of a perianth (PO:0009058)." [Gramene:pankaj_jaiswal, PO:0009058, TO:Laurel_Cooper, TO:moorel]
synonym: "perianth related trait (related)" RELATED []
xref: TO_GIT:105
xref: TO_GIT:306
is_a: TO:0000845 ! collective phyllome structure morphology trait

[Term]
id: TO:0000276
name: drought tolerance
def: "Becoming tolerant to drought like conditions of minimal or no water content in the growth environment." [Gramene:pankaj_jaiswal]
comment: Often  the plants exhibiting high salt tolerance also exhibit drought tolerance.
synonym: "drought resistance (exact)" EXACT []
synonym: "DRTL (related)" RELATED []
is_a: TO:0000394 ! drought stress response trait

[Term]
id: TO:0000277
name: biochemical trait
def: "A plant trait (TO:0000387) which is a quality of a chemical entity (CHEBI:24431), a plant metabolite (CHEBI:76924), or a molecular function (GO:0003674), which occurs in a cellular component (GO:0005575), plant anatomical entity (PO:0025131) or during a plant structure development stage (PO:0009012)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
is_a: TO:0000387 ! plant trait

[Term]
id: TO:0000278
name: root length to shoot length ratio
def: "The ratio determined from the parameters evaluated for root length and the shoot length in a study." [Gramene:pankaj_jaiswal]
synonym: "r/s ratio (exact)" EXACT []
synonym: "root length to shoot length ratio (exact)" EXACT []
synonym: "root/shoot ratio (exact)" EXACT []
synonym: "RTSHRO (exact)" EXACT []
is_a: TO:0000043 ! root morphology trait

[Term]
id: TO:0000279
name: root weight
def: "A root morphology trait (TO:0000043) which is the weight of a root (PO:0009005)." [Gramene:pankaj_jaiswal]
comment: Root weight may be measured as the average dry or fresh weight of roots.
synonym: "RTWT (related)" RELATED []
synonym: "total root weight (related)" RELATED []
synonym: "TRW (related)" RELATED []
is_a: TO:0000043 ! root morphology trait

[Term]
id: TO:0000280
name: seedling vigor
def: "Represents the seedling growth of the plant." [RiceSES:SES]
synonym: "Sd (related)" RELATED []
synonym: "SDLVIG (related)" RELATED []
is_a: TO:0000296 ! vegetative vigor

[Term]
id: TO:0000281
name: metabolite content trait
def: "A biochemical trait (TO:0000277) which is the amount of a metabolite in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Plant metabolites are organic compounds produced by plants, categorized broadly into primary and secondary metabolites, each serving distinct roles in plant life. Primary metabolites, which include amino acids, vitamins, carbohydrates, lipids, proteins, and nucleic acids, are essential for growth and development. Secondary metabolites are not directly involved in basic growth but often have important ecological functions. Examples include antibiotics and pigments, terpenoids, glucosinolates, alkaloids, phenolic compounds, and lignin.
is_a: TO:0000277 ! biochemical trait

[Term]
id: TO:0000282
name: OBSOLETE enzymatic activity and protein content related trait
def: "OBSOLETE: The trait associated with an assay to determine the effected enzymatic activity and protein content." [Gramene:pankaj_jaiswal]
is_obsolete: true

[Term]
id: TO:0000283
name: biological process trait
alt_id: TO:0000349
def: "A plant trait (TO:0000387) which is a process quality (PATO:0001236) of a biological process (GO:0008150) which occurs in a plant anatomical entity (PO:0025131), a cellular component (GO:0005575), or during a plant structure development stage (PO:0009012)." [GO:0008150, Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Refers to process quality (PATO:0001236): A quality which inheres in an process.
synonym: "physiological process trait (exact)" EXACT []
xref: TO_GIT:378
is_a: TO:0000387 ! plant trait

[Term]
id: TO:0000284
name: ADP glucose pyrophosphorylase activity trait
def: "Catalysis of the reaction: ATP + alpha-D-glucose 1-phosphate = diphosphate + ADP-glucose." [EC:2.7.7.27, GO:0008878]
synonym: "adenosine diphosphate glucose pyrophosphorylase (related)" RELATED []
synonym: "adenosine diphosphoglucose pyrophosphorylase (related)" RELATED []
synonym: "ADP-glucose pyrophosphorylase (related)" RELATED []
synonym: "ADP-glucose synthase (related)" RELATED []
synonym: "ADP-glucose synthetase (related)" RELATED []
synonym: "ADPG pyrophosphorylase (related)" RELATED []
synonym: "AGPACT (related)" RELATED []
synonym: "glucose 1-phosphate adenylyltransferase (related)" RELATED []
synonym: "glucose-1-phosphate adenylyltransferase activity (related)" RELATED []
is_a: TO:0000599 ! enzyme activity trait

[Term]
id: TO:0000285
name: OBSOLETE nodal tillering
def: "OBSOLETE" []
is_obsolete: true

[Term]
id: TO:0000286
name: submergence response trait
def: "A water stress response trait (TO:0000237) as a result of flooding or submergence in water." [RiceSES:SES, TO:Laurel_Cooper]
synonym: "Sub (related)" RELATED []
synonym: "submergence tolerance (related)" RELATED []
synonym: "SUBSN (related)" RELATED []
is_a: TO:0000237 ! water stress response trait

[Term]
id: TO:0000287
name: brown rice shape
def: "A grain shape (TO:0002730) of the brown rice. Measure after harvesting, cleaning, and dehulling." [RiceSES:SES, TO:moorel]
comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
synonym: "BrS (related)" RELATED []
synonym: "BRWSHP (related)" RELATED []
xref: PATO:0000052
is_a: TO:0002730 ! grain shape

[Term]
id: TO:0000288
name: alpha-amylase activity trait
def: "An amylase activity trait (TO:0000703) which is the quality of the endohydrolysis of 1,4-a-D-glucosidic linkages in polysaccharides containing three or more 1,4-a-linked D-glucose units." [EC:3.2.1.1, GO:0004556]
synonym: "alpha amylase (related)" RELATED []
synonym: "ALPHAAMYASEACT (related)" RELATED []
synonym: "Amy (related)" RELATED []
synonym: "endoamylase (related)" RELATED []
synonym: "glycogenase (related)" RELATED []
synonym: "taka-amylase A (related)" RELATED []
is_a: TO:0000703 ! amylase activity trait
relationship: part_of TO:0000336 ! total amylase activity trait

[Term]
id: TO:0000289
name: carotene content
def: "A carotenoid content trait (TO:0000496) which is the amount of carotene (CHEBI:23042) in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal, ISBN:198506732, TO:Laurel_Cooper]
comment: Carotenes are a group of naturally occurring tetraterpenes (carotenoids) that are synthesized only in plants, and unlike the xanthophylls, do not contain any oxygen.
xref: CHEBI:23042
xref: TO_GIT:24
is_a: TO:0000496 ! carotenoid content

[Term]
id: TO:0000290
name: flavonoid content
def: "A polyphenol content trait (TO:0001172) which is the amount of flavonoid (CHEBI:47916) in a plant structure (PO:0009011)." [CHEBI:47916, Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Flavonoids are water soluble polyphenolic molecules containing 15 carbon atoms. Flavonoids belong to the polyphenol family and have antioxidant activity.
xref: CHEBI:47916
is_a: TO:0001172 ! polyphenol compound content
relationship: part_of TO:0001143 ! antioxidant activity trait

[Term]
id: TO:0000291
name: carbohydrate content
def: "A metabolite content trait (TO:0000281) which is the amount of carbohydrate (CHEBI:16646) in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "CARBCN (related)" RELATED []
xref: CHEBI:16646
is_a: TO:0000281 ! metabolite content trait

[Term]
id: TO:0000292
name: yellow dwarf disease resistance
def: "Causal agent: Mycoplasma. Symptoms: pale yellow, droopy leaves, excessive tillering and stunting." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "YD (related)" RELATED []
synonym: "YDRS (related)" RELATED []
is_a: TO:0000013 ! mycoplasma disease response

[Term]
id: TO:0000293
name: chlorophyll a content
def: "A chlorophyll content trait (TO:0000495) which is the chlorophyll a content in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "Chl a (exact)" EXACT []
synonym: "chl-a (exact)" EXACT []
synonym: "chlorophyll-a content (exact)" EXACT []
is_a: TO:0000495 ! chlorophyll content

[Term]
id: TO:0000294
name: leaf sheath auricle color
def: "A leaf sheath auricle morphology trait (TO:0002717) which is the color of a leaf sheath auricle (PO:0020106)." [PO:0020106, RiceSES:SES, TO:Laurel_Cooper]
comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
synonym: "AC (related)" RELATED []
synonym: "AUCL (related)" RELATED []
xref: PATO:0000014
is_a: TO:0002717 ! leaf sheath auricle morphology trait

[Term]
id: TO:0000295
name: chlorophyll b content
def: "A chlorophyll content trait (TO:0000495) which is the chlorophyll b content in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "chl b content (exact)" EXACT []
synonym: "chl-b content (exact)" EXACT []
synonym: "chlorophyll-b content (exact)" EXACT []
is_a: TO:0000495 ! chlorophyll content

[Term]
id: TO:0000296
name: vegetative vigor
def: "Represents the growth of plant. Used to evaluate genetic material under stress and non-stress conditions, several factors may interact, influencing the seedling vigor (e.g. tillering ability, plant height, etc)." [Gramene:pankaj_jaiswal]
synonym: "vegetative growth vigor (related)" RELATED []
synonym: "Vg (related)" RELATED []
synonym: "VGVIG (related)" RELATED []
is_a: TO:0000250 ! plant vigor trait

[Term]
id: TO:0000297
name: glucosamine content
def: "The amount of glucosamine (CHEBI:5417) in a plant structure (PO:0009011)." [CHEBI:5417, Gramene:pankaj_jaiswal, ISBN:0198506732]
comment: Glucosamine is an amino sugar and is one of the most abundant natural monosaccharides.
synonym: "2-amino-2-deoxyglucopyranose content (related)" RELATED []
synonym: "GLUCNCN (related)" RELATED []
is_a: TO:0006006 ! monosaccharide content

[Term]
id: TO:0000298
name: chlorophyll ratio
def: "A chlorophyll content trait (TO:0000495) which is the ratio of chlorophyll a to chlorophyll b in a plant structure (PO:0009011)." [ISBN:198506732, TO:Laurel_Cooper]
comment: The average ratio of chl a to chl b is about 3:1.
synonym: "chl a to chl b ratio (exact)" EXACT []
synonym: "chl-a to chl-b ratio (exact)" EXACT []
synonym: "chlorophyll content ratio (exact)" EXACT []
synonym: "CHLRO (related)" RELATED []
is_a: TO:0000495 ! chlorophyll content

[Term]
id: TO:0000299
name: leaf lamina color
def: "A leaf lamina morphology trait (TO:0000829) which is the color of the leaf lamina (PO:0020039)." [PO:0020039, RiceSES:SES, TO:moorel]
comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
synonym: "LBC (related)" RELATED []
synonym: "leaf blade color (related)" RELATED []
synonym: "leaf color (related)" RELATED []
synonym: "LFLCL (related)" RELATED []
xref: PATO:0000014
is_a: TO:0000829 ! leaf lamina morphology trait

[Term]
id: TO:0000300
name: glucose content
def: "Amount of glucose present in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
comment: It is a common monosaccharide that is a component of oligo/disaccharides (sucrose, lactose, and maltose) and various complex carbohydrates.
synonym: "D-glucose content (related)" RELATED []
synonym: "dextrose content (related)" RELATED []
synonym: "GLUCCN (related)" RELATED []
is_a: TO:0000307 ! hexose content

[Term]
id: TO:0000301
name: xanthophyll content
def: "The xanthophyll content in a plant structure (PO:0009011)." [ISBN:198506732]
comment: These are any group of naturally occurring tetraterpenes (carotenoids) that are synthesized only in plants and contain oxygen in various forms.
synonym: "XANCN (related)" RELATED []
is_a: TO:0000496 ! carotenoid content

[Term]
id: TO:0000302
name: OBSOLETE smut disease
def: "OBSOLETE." []
is_obsolete: true

[Term]
id: TO:0000303
name: low temperature stress response
def: "A temperature stress response trait (TO:0000432) which is the response to colder than normal growth conditions." [TO:Laurel_Cooper]
comment: Cold temperature stress varies from chilling to freezing and varies depending upon the species of the plant. Some plants survive low temperatutre by undergoing cold acclimation, while other plants require a period of low temperature (vernalization) in order to flower.
synonym: "COLDTL (related)" RELATED []
synonym: "CTol (related)" RELATED []
is_a: TO:0000432 ! temperature stress response trait

[Term]
id: TO:0000304
name: seed thickness
def: "A seed morphology trait (TO:0000184) which is the thickness of a seed (PO:0009010)." [Gramene:pankaj_jaiswal, PO:0009010, TO:moorel]
comment: Seed thickness is a component of seed size (TO:0000391) and has a component of seed quality (TO:0000162). Refer to (PATO:0000915): A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width.
synonym: "SDTH (related)" RELATED []
xref: PATO:0000915
xref: TO_GIT:197
is_a: TO:0000184 ! seed morphology trait
relationship: part_of TO:0000391 ! seed size

[Term]
id: TO:0000305
name: glutamine synthetase content
def: "Catalysis of the reaction: ATP + L-glutamate + ammonia = ADP + phosphate + L-glutamine." [EC:6.3.1.2, GO:0004356]
synonym: "glutamate-ammonia ligase (related)" RELATED []
synonym: "glutamylhydroxamic synthetase (related)" RELATED []
synonym: "GS1 (related)" RELATED []
synonym: "GS1CN (related)" RELATED []
synonym: "L-glutamine synthetase (related)" RELATED []
is_a: TO:0000598 ! protein content

[Term]
id: TO:0000306
name: root thickness
def: "A root morphology trait (TO:0000043) which is the thickness of a root (PO:0009005)." [Gramene:jcl, Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Root thickness may be calculated as an average of several roots.
synonym: "RTTH (related)" RELATED []
is_a: TO:0000043 ! root morphology trait

[Term]
id: TO:0000307
name: hexose content
def: "Amount of hexose present in a plant structure (PO:0009011)." [ISBN:198506732]
comment: Hexose is any aldose having a chain of six carbon atoms in a molecule.
synonym: "HEXCN (related)" RELATED []
is_a: TO:0006006 ! monosaccharide content

[Term]
id: TO:0000308
name: pollen fertility restoration trait
def: "A pollen fertility trait (TO:0000421) where the formerly male sterile pollen becomes fertile." [Gramene:pankaj_jaiswal, RiceSES:SES, TO:Laurel_Cooper]
synonym: "male fertility restoration in F1 hybrids (related)" RELATED []
synonym: "MALERF (related)" RELATED []
is_a: TO:0000421 ! pollen fertility

[Term]
id: TO:0000310
name: self-incompatibility
def: "An incompatibility trait (TO:0000035) which is a genetic barrier preventing self-pollination." [PMID:10066554, TO:Laurel_Cooper]
comment: In most cases self-incompatibility is controlled by a single genetic locus, recent results show that complex signal transduction pathways and many players are involved in pollen recognition and rejection.
synonym: "Genetic self-incompatibility (related)" RELATED []
is_a: TO:0000035 ! incompatibility trait

[Term]
id: TO:0000311
name: invertase activity trait
def: "Catalysis of the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides." [EC:3.2.1.26, GO:0004564]
synonym: "acid invertase (related)" RELATED []
synonym: "alkaline invertase (related)" RELATED []
synonym: "beta-D-fructofuranoside fructohydrolase (related)" RELATED []
synonym: "beta-fructofuranosidase activity (related)" RELATED []
synonym: "beta-fructosidase (related)" RELATED []
synonym: "beta-h-fructosidase (related)" RELATED []
synonym: "fructosylinvertase (related)" RELATED []
synonym: "glucosucrase (related)" RELATED []
synonym: "INVACT (related)" RELATED []
synonym: "invertin (related)" RELATED []
synonym: "maxinvert L 1000 (related)" RELATED []
synonym: "saccharase (related)" RELATED []
synonym: "sucrase (related)" RELATED []
is_a: TO:0000599 ! enzyme activity trait

[Term]
id: TO:0000312
name: NADH glutamate synthase content
def: "Catalysis of the reaction: 2 L-glutamate + NAD+ = L-glutamine + 2-oxoglutarate + NADH + H+." [EC:1.4.1.14, GO:0016040]
synonym: "glutamate (reduced nicotinamide adenine dinucleotide) synthase (related)" RELATED []
synonym: "glutamate synthase (NADH) activity (related)" RELATED []
synonym: "glutamate synthase (NADH2) (related)" RELATED []
synonym: "L-glutamate synthase (NADH) (related)" RELATED []
synonym: "L-glutamate synthetase (related)" RELATED []
synonym: "NADH-dependent glutamate synthase (related)" RELATED []
synonym: "NADH-glutamate synthase (related)" RELATED []
synonym: "NADHGOGATCN (related)" RELATED []
is_a: TO:0000598 ! protein content

[Term]
id: TO:0000313
name: peroxidase-71 content
def: "Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O." [EC:1.11.1.7, GO:0004601]
synonym: "P71CN (related)" RELATED []
is_a: TO:0000598 ! protein content

[Term]
id: TO:0000314
name: phosphoglycerate mutase content
def: "Catalysis of the reaction: 2-phospho-D-glycerate = 3-phospho-D-glycerate." [EC:5.4.2.1, GO:0004619]
synonym: "PGAM (related)" RELATED []
synonym: "PGAMCN (related)" RELATED []
is_a: TO:0000598 ! protein content

[Term]
id: TO:0000315
name: bacterial disease response
def: "A microbial disease response (TO:0000112) trait which is the response to damage to a plant structure (PO:0009011) caused by an infection by a bacterium (NCBITaxon:2)." [Gramene:pankaj_jaiswal, NCBITaxon:2, TO:Laurel_Cooper]
comment: Plant structure (PO:0009011) includes the whole plant (PO:0000003), as well as parts of a plant. Plants can exhibit varying degrees of resistance or susceptibility to bacterial infections.
is_a: TO:0000112 ! microbial disease response

[Term]
id: TO:0000316
name: photosynthetic ability
def: "The photosynthesis ability determined on a plant structure (PO:0009011) under stress." [Gramene:pankaj_jaiswal]
comment: Methods may include actual measurements on photosynthesis, pigment content or the content and composition of enzymes associated with photosynthesis.
synonym: "PHOTOSYNAB (related)" RELATED []
is_a: TO:0000283 ! biological process trait

[Term]
id: TO:0000317
name: cutworm response trait
def: "A Lepidoptera damage response trait (TO:0001162) which is caused by a cutworm (Spodoptera litura)." [Gramene:pankaj_jaiswal, NCBITaxon:69820, TO:Laurel_Cooper]
synonym: "CUWRRS (related)" RELATED []
is_a: TO:0001162 ! Lepidoptera damage response trait

[Term]
id: TO:0000318
name: reducing sugar content
def: "Amount of reducing sugar present in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
comment: A reducing sugar is any sugar which in basic solution forms contain aldehyde or ketone groups that are oxidised to carboxylic acids.
synonym: "REDSUGCN (related)" RELATED []
is_a: TO:0000333 ! sugar content

[Term]
id: TO:0000319
name: rubisco content
def: "Amount of Rubisco enzyme or protein present in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
synonym: "RUBISCOCN (related)" RELATED []
is_a: TO:0000598 ! protein content

[Term]
id: TO:0000320
name: chlorophyll to rubisco ratio
def: "A chlorophyll content trait (TO:0000495) which is ratio of the amount of RuBisCo protein to that of the chlorophyll content (TO:0000495) in a plant strucure (PO:0009011)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "RUBISCOCHLRO (related)" RELATED []
is_a: TO:0000319 ! rubisco content
is_a: TO:0000495 ! chlorophyll content

[Term]
id: TO:0000321
name: rubisco to nitrogen content ratio
def: "A ratio of the amount of rubisco protein to that of the total nitrogen content in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
synonym: "RUBISCONICNRO (related)" RELATED []
is_a: TO:0000319 ! rubisco content

[Term]
id: TO:0000322
name: phenotypic acceptability
def: "A plant quality trait (TO:0000597) which is the evaluation of whether the plant phenotype is meeting the breeding objectives." [RiceSES:SES, TO:Laurel_Cooper]
comment: Breeding objectives vary for each trait and variety. The evaluation should reflect the overall acceptability of the variety.
synonym: "overall liking (related)" RELATED []
synonym: "PAcp (related)" RELATED []
is_a: TO:0000597 ! plant quality trait

[Term]
id: TO:0000323
name: rice stem rot disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Magnaporthe salvinii (Nakataea sigmoidea, Sclerotium oryzae) and Helminthosporium sigmoideum var. irregulare." [Gramene:pankaj_jaiswal, NCBITaxon:165778, NCBITaxon:58127, RiceSES:SES, TO:Laurel_Cooper]
comment: Symptoms: dark lesions develop on the stems near the water line. Small, dark bodies (sclerotia) develop, weaken the stem and cause lodging.
synonym: "CULMROTRS (related)" RELATED []
synonym: "SR (related)" RELATED []
is_a: TO:0001145 ! Ascomycete fungal disease response

[Term]
id: TO:0000324
name: rubisco to soluble protein ratio
def: "A ratio of the amount of rubisco protein to that of the soluble protein content in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
synonym: "RUBISCOSPROTRO (related)" RELATED []
is_a: TO:0000319 ! rubisco content

[Term]
id: TO:0000325
name: soluble protein content
def: "Amount of soluble protein present in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
synonym: "SPROTCN (related)" RELATED []
is_a: TO:0000598 ! protein content

[Term]
id: TO:0000326
name: leaf color
def: "A leaf morphology trait (TO:0000748) which is the color of a leaf (PO:0025034)." [Gramene:pankaj_jaiswal, PO:0025034, TO:Laurel_Cooper]
comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
synonym: "LFCL (related)" RELATED []
xref: PATO:0000014
is_a: TO:0000748 ! leaf morphology trait
created_by: jaiswalp

[Term]
id: TO:0000327
name: shoot system yield trait
def: "A yield trait (TO: 0000371) that is the amount of a plant structure (PO:0009011) or portion of plant substance (PO:0025161) produced by the shoot system (PO:0009006) which is harvested." [ISBN:0198506732, TO:Laurel_Cooper]
synonym: "BIOMYLD (related)" RELATED []
synonym: "BY (related)" RELATED []
xref: TO_GIT:289
is_a: TO:0000371 ! yield trait

[Term]
id: TO:0000328
name: sucrose content
def: "The amount of sucrose present in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
comment: Sucrose is a disaccharide consisting of glucose and fructose joined together.
synonym: "saccharose content (related)" RELATED []
synonym: "SUCROSECN (related)" RELATED []
is_a: TO:0006003 ! oligosaccharide content

[Term]
id: TO:0000329
name: tiller formation trait
def: "A shoot system growth and development trait (TO:0000654) which is the formation of a basal axillary shoot system (tiller; PO:0005001)." [ISBN:9712200299, TO:Laurel_Cooper]
comment: The degree of tillering is affected by variety, spacing of plants in the field, season of planting and environmental conditions e.g. nitrogen levels.
synonym: "Ti (related)" RELATED []
synonym: "TIAB (related)" RELATED []
is_a: TO:0000654 ! shoot system growth and development trait

[Term]
id: TO:0000330
name: OBSOLETE outcrossing potential
def: "OBSOLETE It is a measure of percent seed set on the out-pollinated primary panicle." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "extent of outcrossing (related)" RELATED []
synonym: "extent of outcrossing on male sterile lines (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000331
name: sucrose phosphate synthase activity trait
def: "Catalysis of the reaction: UDP-glucose + D-fructose 6-phosphate = UDP + sucrose 6-phosphate." [EC:2.4.1.14, GO:0046524]
synonym: "SPS (related)" RELATED []
synonym: "SPSACT (related)" RELATED []
synonym: "sucrose 6-phosphate synthase (related)" RELATED []
synonym: "sucrose phosphate synthetase (related)" RELATED []
synonym: "sucrose phosphate-uridine diphosphate glucosyltransferase (related)" RELATED []
synonym: "sucrose-phosphate synthase activity (related)" RELATED []
synonym: "sucrosephosphate-UDP glucosyltransferase (related)" RELATED []
synonym: "UDP-glucose-fructose-phosphate glucosyltransferase (related)" RELATED []
synonym: "uridine diphosphoglucose-fructose phosphate glucosyltransferase (related)" RELATED []
is_a: TO:0000599 ! enzyme activity trait

[Term]
id: TO:0000332
name: OBSOLETE rice whorl maggot response trait
def: "OBSOLETE" [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "RWM (related)" RELATED []
synonym: "RWMRS (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000333
name: sugar content
def: "Amount of sugar present in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
synonym: "SUGARCN (related)" RELATED []
is_a: TO:0000291 ! carbohydrate content

[Term]
id: TO:0000334
name: OBSOLETE hybrid evaluation
def: "OBSOLETE." []
synonym: "parental line evaluation (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000335
name: ligule shape
def: "A ligule morphology trait (TO:0002748) which is the actual shape of the ligule (PO:0020105)." [PO:0020105, RiceSES:SES, TO:Laurel_Cooper]
comment: Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's\nratios of distances between its features (points, edges, surfaces and\nalso holes etc).
synonym: "LIGSHP (related)" RELATED []
synonym: "LS (related)" RELATED []
xref: PATO:0000052
is_a: TO:0002748 ! ligule morphology trait

[Term]
id: TO:0000336
name: total amylase activity trait
def: "A combined activity of both the alpha and beta amylase enzymes." [EC:3.2.1.-, GO:0016160, Gramene:pankaj_jaiswal]
synonym: "amylase activity (related)" RELATED []
synonym: "TAMYASEACT (related)" RELATED []
is_a: TO:0000703 ! amylase activity trait
relationship: part_of TO:0000606 ! diastatic power

[Term]
id: TO:0000337
name: kneeing ability
def: "Represents the angle of the tiller in the submerged water fields (flash flooding)." [RiceSES:SES]
comment: Less is the tiller angle compared to water surface the least is the chance of plant's survivability.
synonym: "KnA (related)" RELATED []
synonym: "KNEAB (related)" RELATED []
synonym: "tiller angle (related)" RELATED []
is_a: TO:0000286 ! submergence response trait

[Term]
id: TO:0000338
name: beta-amylase activity trait
def: "An amylase activity trait (TO:0000703) which is the quality of the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains." [EC:3.2.1.2, GO:0016161]
synonym: "BETAAMYASEACT (related)" RELATED []
is_a: TO:0000703 ! amylase activity trait
relationship: part_of TO:0000336 ! total amylase activity trait

[Term]
id: TO:0000339
name: stem thickness
alt_id: TO:0000535
def: "A stem morphology trait (TO:0000361) which is the thickness of a stem (PO:0009047)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "culm thickness (related)" RELATED []
synonym: "culm thickness (sensu Poaceae) (related)" RELATED []
synonym: "CULMTH (related)" RELATED []
synonym: "STEMTH (related)" RELATED []
is_a: TO:0000361 ! stem morphology trait
relationship: part_of TO:0000051 ! stem strength
relationship: part_of TO:0000892 ! stem size

[Term]
id: TO:0000340
name: total soluble sugar content
def: "Total amount of soluble sugar present in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
synonym: "TSOLSUGARCN (related)" RELATED []
is_a: TO:0000333 ! sugar content

[Term]
id: TO:0000341
name: OBSOLETE plant genetic trait
alt_id: TO:0000005
def: "OBSOLETE. A plant genetic trait is a distinguishable feature or a characteristic or a quality of character or a phenotypic feature of a developing or developed plant species which is genetically linked to a physical or genetic marker" [Gramene:pankaj_jaiswal]
is_obsolete: true

[Term]
id: TO:0000342
name: panicle axis angle
def: "Represents the angle of panicle axis." [RiceSES:SES]
synonym: "PnAk (related)" RELATED []
is_a: TO:0000270 ! inflorescence axis angle

[Term]
id: TO:0000343
name: grass weed
def: "A common grass weed Echinochloa glabbrescens or Echinochloa crus-galli (Barnyard grass), Typha spp. (Cattails), Leptochloa fascicularis (Bearded sprangletop) grows as a weed in the rice field. Can be distinguished from rice plant by the leaf shape, venation, stem cross-section and plant shape leaf shape." [Gramene:pankaj_jaiswal, http://www.ipm.ucdavis.edu/PMG/r682700999.html, ISBN:9712200299]
is_a: TO:0000347 ! weed damage response trait

[Term]
id: TO:0000344
name: days to flowering trait
def: "A flowering time trait (TO:0002616) which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower and in some cases, it is measured as the time 50% of plants in a study achieve flowering.
synonym: "days to flowering (exact)" EXACT []
synonym: "Delay in flowering time (narrow)" NARROW []
synonym: "DTFL (related)" RELATED []
xref: TO_GIT:269
is_a: TO:0002616 ! flowering time trait

[Term]
id: TO:0000345
name: seed viability
def: "A seed quality trait (TO:0000931) which is the the ability of a seed to germinate, grow, and develop into a new plant." [TO:Laurel_Cooper]
synonym: "SDVIA (related)" RELATED []
is_a: TO:0000931 ! seed quality trait

[Term]
id: TO:0000346
name: tiller number
def: "A basal axillary shoot system morphology trait (TO:0001168) which is the number of tillers per plant." [RiceSES:SES, TO:Laurel_Cooper]
synonym: "TINB (related)" RELATED []
is_a: TO:0001168 ! basal axillary shoot system morphology trait

[Term]
id: TO:0000347
name: weed damage response trait
def: "A biotic plant stress trait (TO:0000179) which is the response to the competition for nutrients, light, water or space for caused by another plant (NCBITaxon:33090)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: In the case of parasitic plants, the weed may cause damage to a plant structure (PO:0009011), as well as competing for nutrients.
is_a: TO:0000179 ! biotic plant stress trait

[Term]
id: TO:0000348
name: OBSOLETE sogatodes resistance
def: "OBSOLETE" [Gramene:pankaj_jaiswal]
synonym: "SAGRS (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000350
name: OBSOLETE cms-hl type
def: "OBSOLETE  Abortion of microspore development at bi-nucleate stage." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "CMS-HL (related)" RELATED []
synonym: "HLCMS (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000351
name: zinc sensitivity
def: "Sensitivity to the zinc content in the growth medium. It acts as cofactor for certain enzymes like Class II aldolases, metalloproteases, alkaline phosphatase, etc." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "PDef (related)" RELATED []
synonym: "zinc deficiency (related)" RELATED []
synonym: "ZNSN (related)" RELATED []
is_a: TO:0000080 ! micronutrient response

[Term]
id: TO:0000352
name: plant dry weight
def: "The dry weight of the whole plant." [Gramene:pankaj_jaiswal37]
synonym: "DMASS (related)" RELATED []
synonym: "dry mass (related)" RELATED []
synonym: "PTDWT (related)" RELATED []
synonym: "RTWT (related)" RELATED []
synonym: "total dry mass (related)" RELATED []
is_a: TO:0000371 ! yield trait

[Term]
id: TO:0000353
name: aborted at pollen maturity stage
def: "Abortion at later stage of microspore development, the pollen looks like fertile pollen." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "PMTABR (related)" RELATED []
is_a: TO:0000218 ! pollen abortion type

[Term]
id: TO:0000354
name: aluminum response trait
def: "A chemical stress response trait (TO:0000482) to aluminum minerals in the growth environment." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "ALSN (related)" RELATED []
synonym: "aluminium sensitivity (exact)" EXACT []
synonym: "aluminum toxicity (related)" RELATED []
is_a: TO:0000482 ! chemical stress response

[Term]
id: TO:0000355
name: heterosis
def: "A plant vigor trait (TO:0000250) which is a biological phenomenon where the offspring of two genetically distinct parents exhibits superior traits compared to its parents." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "HET (related)" RELATED []
synonym: "heterosis in f1 hybrid (related)" RELATED []
synonym: "hybrid vigor (exact)" EXACT []
is_a: TO:0000250 ! plant vigor trait

[Term]
id: TO:0000356
name: rice brown spot disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Cochliobolus miyabeanus (Bipolaris oryzae, Drechslera oryzae)." [Gramene:pankaj_jaiswal, NCBITaxon:101162, RiceSES:SES]
comment: Symptom: typical leaf spots are small, oval or circular and dark brown. Larger lesions usually have same color on the edges but have a pale (usually grayish) center. Most spots have a light yellow halo around the outer edge.
synonym: "BS (related)" RELATED []
is_a: TO:0001145 ! Ascomycete fungal disease response

[Term]
id: TO:0000357
name: plant growth and development trait
def: "A plant trait (TO:0000387) which is the growth (GO:0048590) and development (GO:0032502) of a plant anatomical entity (PO:0025131) or a constituent cellular component (GO:0005575)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Growth and development traits are qualities of the development of the whole plant or plant parts.
xref: GO:0032502
xref: GO:0048590
xref: TO_GIT:248
is_a: TO:0000387 ! plant trait
created_by: jaiswalp

[Term]
id: TO:0000358
name: plant female sterility
def: "A plant sterility trait (TO:0000485) where the plant is unable to produce viable seeds, even with viable pollen present." [TO:Laurel_Cooper]
synonym: "FEMST (related)" RELATED []
is_a: TO:0000485 ! plant sterility trait

[Term]
id: TO:0000359
name: female flowering
def: "A flowering time trait which is the timing of the flowering (anthesis) of female flowers." [Gramene:pankaj_jaiswal]
comment: Ofetn influenced by the environemnt that includes, day light, temperature and geographic location.
synonym: "days to silk (related)" RELATED []
synonym: "DTSLK (related)" RELATED []
synonym: "Female flower anthesis (related)" RELATED []
synonym: "Female flower flowering (related)" RELATED []
synonym: "FEMFLW (related)" RELATED []
synonym: "FFLW (related)" RELATED []
is_a: TO:0002616 ! flowering time trait

[Term]
id: TO:0000360
name: leaf elongation rate
def: "Measure of growth or elongation rate of the leaf in a plant." [Gramene:pankaj_jaiswal]
synonym: "leaf growth rate (related)" RELATED []
synonym: "LFELRATE (related)" RELATED []
is_a: TO:0000655 ! leaf growth and development trait

[Term]
id: TO:0000361
name: stem morphology trait
def: "A shoot axis morphology trait (TO:0000739) which is the quality of a stem (PO:0009047)." [Gramene:pankaj_jaiswal, PO:0009047, TO:moorel]
synonym: "core morphology trait  (narrow)" NARROW []
xref: TO_GIT:157
is_a: TO:0000739 ! shoot axis morphology trait

[Term]
id: TO:0000362
name: OBSOLETE rot disease
def: "OBSOLETE." []
is_obsolete: true

[Term]
id: TO:0000364
name: leaf collar color
def: "Changes monitored in leaf collar color." [RiceSES:SES]
synonym: "CC (related)" RELATED []
synonym: "collar color (related)" RELATED []
synonym: "LFCCL (related)" RELATED []
is_a: TO:0000843 ! portion of plant tissue morphology trait
relationship: part_of TO:0000326 ! leaf color

[Term]
id: TO:0000365
name: male flowering
def: "A flowering time trait (TO:0002616) which is the timing of the flowering (anthesis) of male flowers." [Gramene:pankaj_jaiswal]
comment: Often influenced by the environment that includes, daylight, temperature and geographic location.
synonym: "male flower anthesis (related)" RELATED []
synonym: "male flower flowering (related)" RELATED []
synonym: "MALEFLW (related)" RELATED []
synonym: "MFLW (related)" RELATED []
is_a: TO:0002616 ! flowering time trait

[Term]
id: TO:0000366
name: reproductive growth time
def: "A plant phenological trait (TO:0000933) which is the amount of time taken by the reproductive growth phase in a plant's life cycle." [Gramene:pankaj_jaiswal]
synonym: "RGTM (related)" RELATED []
xref: TO:Laurel_Cooper
is_a: TO:0000933 ! plant phenological trait

[Term]
id: TO:0000367
name: basal leaf sheath color
def: "The changes in the color of basal leaf sheath." [RiceSES:SES]
synonym: "BALFSCL (related)" RELATED []
synonym: "BLSC (related)" RELATED []
is_a: TO:0002724 ! leaf sheath color

[Term]
id: TO:0000368
name: shoot system elongation rate
def: "A shoot system growth and development trait (TO:0000654) which is the rate of growth of the shoot system." [TO:cooperl]
synonym: "elongation of plant height (related)" RELATED []
synonym: "SHELRATE (related)" RELATED []
is_a: TO:0000654 ! shoot system growth and development trait

[Term]
id: TO:0000369
name: vegetative growth time
def: "A plant phenological trait (TO:0000933) which is the length of time of the vegetative growth phase in a plant's life cycle." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "VGTM (related)" RELATED []
is_a: TO:0000933 ! plant phenological trait

[Term]
id: TO:0000370
name: leaf width
def: "A leaf morphology trait (TO:0000748) which is the width of a leaf (PO:0025034)." [PO:0025034, RiceSES:SES, TO:Laurel_Cooper, TO:moorel]
comment: Actual measurements, in centimeters of the widest portion of the leaf. To be precise use the children terms leaf lamina width (TO:0002720) or  'leaf sheath width (TO:0002721). Refers to width (PATO:0000921) A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
synonym: "LFWD (related)" RELATED []
synonym: "lfwid (related)" RELATED [MaizeGDB_QTL:61714]
synonym: "LW (related)" RELATED []
xref: MaizeGDB_QTL:61714
xref: PATO:0000921
xref: TO_GIT:247
is_a: TO:0000748 ! leaf morphology trait
relationship: part_of TO:0002637 ! leaf size

[Term]
id: TO:0000371
name: yield trait
def: "A plant trait (TO:0000387) which is a harvestable product that is a plant anatomical entity (PO:0025131) or one or more constituent cellular components (GO:0005575) contained therein." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "YLD (related)" RELATED []
is_a: TO:0000387 ! plant trait

[Term]
id: TO:0000372
name: amylose to amylopectin ratio
def: "Ratio of amount of amylose to amylopectin content." [Gramene:pankaj_jaiswal]
synonym: "AMYAMYPCTRO (related)" RELATED []
is_a: TO:0006007 ! polysaccharide content

[Term]
id: TO:0000373
name: inflorescence morphology trait
alt_id: TO:0000363
alt_id: TO:0000584
alt_id: TO:0000585
def: "A reproductive shoot system morphology trait (TO:0000786) that is a quality of an inflorescence (PO:0009049)." [Gramene:pankaj_jaiswal, PO:0009049]
synonym: "Head morphology trait (narrow)" NARROW []
synonym: "inflorescence structure trait (related)" RELATED []
xref: TO_GIT:92
xref: TO_GIT:97
is_a: TO:0000786 ! reproductive shoot system morphology trait

[Term]
id: TO:0000374
name: starch breakdown viscosity
def: "A starch gelatinization trait (TO:0001167) which is the tendency of gelatinized starch granules to break during cooking, especially at high temperature." [TO:Laurel_Cooper] {comment="DOI:10.1006/jcrs.2001.0374"}
comment: Breakdown is usually calculated from a resulting viscogram by subtracting hot paste (trough) viscosity from peak viscosity.
synonym: "BRKVIS (related)" RELATED []
xref: PMCID:PMC434838
is_a: TO:0001167 ! starch gelatinization trait

[Term]
id: TO:0000375
name: brown rice length to width ratio
def: "A grain length to width ratio (TO:0002731) which is determined from grain length and grain width on dehulled unpolished rice grain." [Gramene:pankaj_jaiswal, TO:moorel]
comment: Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large.
synonym: "brown rice length to width ratio (related)" RELATED []
synonym: "BRWRRO (related)" RELATED []
xref: PATO:0000117
xref: PATO:0000122
xref: PATO:0000921
is_a: TO:0002731 ! dehulled grain length to width ratio

[Term]
id: TO:0000376
name: starch consistency viscosity
def: "A starch gelatinization trait (TO:0001167) which is the balance of gelatinization (granule swelling and disruption) and retrogradation (network formation and water trapping)." [DOI:10.1007/s001220050037, TO:Laurel_Cooper]
comment: The starch consistency viscosity (CSV) is the difference between the cool paste viscosity (CPV) and the hot paste viscosity (HPV)
synonym: "CONVIS (related)" RELATED []
is_a: TO:0001167 ! starch gelatinization trait

[Term]
id: TO:0000377
name: cooked grain elongation
def: "A cooking quality trait (TO:0001069) which is the amount of elongation of a grain with cooking." [TO:Laurel_Cooper]
synonym: "CKKEL (related)" RELATED []
synonym: "cooked kernel elongation (related)" RELATED []
is_a: TO:0001069 ! cooking quality trait

[Term]
id: TO:0000378
name: rice leaf scald disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Monographella albescens (Microdochium oryzae)." [Gramene:pankaj_jaiswal, NCBITaxon:1682384, RiceSES:SES, TO:Laurel_Cooper]
comment: Symptoms: the lesions occurs mostly near leaf tips, but sometimes start at the margin of the blade and develops into large ellipsoid areas encircled by dark-brown, narrow bands accompanied by a light-brown halo.
synonym: "LFSRS (related)" RELATED []
synonym: "LSc (related)" RELATED []
is_a: TO:0001145 ! Ascomycete fungal disease response

[Term]
id: TO:0000379
name: starch cool paste viscosity
def: "A starch gelatinization trait (TO:0001167) which is the viscosity of a starch paste after it has been cooked and cooled down." [] {comment="TO:Laurel_Cooper"}
synonym: "CPVIS (related)" RELATED []
is_a: TO:0001167 ! starch gelatinization trait

[Term]
id: TO:0000380
name: OBSOLETE planthopper
def: "OBSOLETE." []
is_obsolete: true

[Term]
id: TO:0000381
name: cracked grain percentage
def: "A grain quality trait (TO:0000162) which is the percentage of cracked, dehulled grain with most of the size still intact." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "CRKGRPCENT (related)" RELATED []
synonym: "fissured grain percentage (related)" RELATED []
is_a: TO:0000162 ! grain quality trait

[Term]
id: TO:0000382
name: 1000-grain weight
alt_id: TO:0000533
def: "A grain weight (TO:0000919) which is the weight of a sample of 1000 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000)." [Gramene:pankaj_jaiswal]
comment: Thousand grain weights are measured in grams, on a precision balance, on 1000 well-developed whole grains (with the caryopsis hull; PO:0006000), dried to 13% moisture content.
synonym: "1000-grain weight (exact)" EXACT []
synonym: "TGRWT (exact)" EXACT []
synonym: "thousand grain weight (exact)" EXACT []
synonym: "thousand seed weight (related)" RELATED []
synonym: "TSDWT (related)" RELATED []
is_a: TO:0000919 ! grain weight

[Term]
id: TO:0000383
name: grain belly percent white
def: "Percentage opaque white area in the kernel belly." [Gramene:pankaj_jaiswal]
synonym: "GRBPCENTWHT (related)" RELATED []
is_a: TO:0000587 ! endosperm quality

[Term]
id: TO:0000384
name: nematode damage response trait
def: "An animal damage response trait (TO:0000054) which is the response to damage to a plant structure (PO:0009011) caused by a nematode (NCBITaxon:6231)." [Gramene:pankaj_jaiswal, NCBITaxon:6231, PO:0009011, TO:Laurel_Cooper]
synonym: "NDRS (related)" RELATED []
is_a: TO:0000054 ! animal damage response trait

[Term]
id: TO:0000385
name: milled grain color
def: "A grain color (TO:0002617) trait which is the color of dehulled, milled grain (caryopsis fruit; PO:0030104)." [Gramene:pankaj_jaiswal, PATO:0000014, TO:Laurel_Cooper, TO:moorel]
comment: Dehulled, milled grains have had the caryopsis hull (PO:0006000) removed, as well as the pericarp (PO:0009084), aleurone layer (PO:0005360) and germ (plant embryo; PO:0009009).  Refers to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
synonym: "GRCL (related)" RELATED []
synonym: "groat color (exact)" EXACT []
synonym: "kernel color (related)" RELATED []
synonym: "MGRCL (related)" RELATED []
xref: PATO:0000014
is_a: TO:0001109 ! grain color trait

[Term]
id: TO:0000386
name: rice ragged stunt virus resistance
def: "Causal agent: rice ragged stunt virus (RRSV). Symptoms: plants are stunted but remain dark green. Leaves are ragged and twisted. Vein swelling on leaf collar, leaf blades and leaf sheaths." [Gramene:pankaj_jaiswal\,, RiceSES:SES]
synonym: "RSVRS (related)" RELATED []
is_a: TO:0000148 ! viral disease response trait

[Term]
id: TO:0000387
name: plant trait
def: "A measurable or observable characteristic of a cellular component (GO:0005575), biological process (GO:0008150) or molecular function (GO:0003674) that is part of, or has participant a plant anatomical entity (PO:0025131) and/or a plant structure development stage (PO:0009012)." [GO:0003674, GO:0005575, GO:0008150, Gramene:pankaj_jaiswal, PO:0009012, PO:0025131, TO:Laurel_Cooper]
comment: This includes physiological, molecular and biochemical traits as well.
synonym: "plant phenotype (related)" RELATED []
synonym: "plant quality (related)" RELATED []
xref: TO_GIT:52
created_by: jaiswalp

[Term]
id: TO:0000388
name: forage yield
def: "Yield of forage matter upon harvest." [Gramene:pankaj_jaiswal]
synonym: "FRGYLD (related)" RELATED []
synonym: "FY (related)" RELATED []
synonym: "straw yield (related)" RELATED []
is_a: TO:0000327 ! shoot system yield trait

[Term]
id: TO:0000389
name: nuclear mediated male sterility
def: "A plant male sterility trait (TO:0000437) which shows mendelian inheritance, caused by genetic modifications or mutations in the nuclear genome." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "genic male sterility (broad)" BROAD []
is_a: TO:0000437 ! plant male sterility

[Term]
id: TO:0000390
name: grain core percent white
def: "Percentage opaque white area in the kernel core." [Gramene:pankaj_jaiswal]
synonym: "GRCPCENTWHT (related)" RELATED []
is_a: TO:0000587 ! endosperm quality

[Term]
id: TO:0000391
name: seed size
def: "A seed morphology trait (TO:0000184) which is the size of a seed (PO:0009010)." [Gramene:pankaj_jaiswal, PO:0009010, TO:Laurel_Cooper]
comment: Seed size is determined by the ratio of the seed length to seed width and is a component of seed quality (TO:0000162).  Seed size may be a qualitative measure or may be organized into categories ranging from small to medium to large.  Refers to size (PATO:0000117): A morphology quality  inhering in a bearer by virtue of the bearer's physical magnitude.
xref: PATO:0000117
xref: TO_GIT:183
is_a: TO:0000184 ! seed morphology trait
relationship: has_part TO:0000931 ! seed quality trait

[Term]
id: TO:0000392
name: plant reproduction trait
def: "A plant trait (TO:0000387) which is a measure of the ability of a plant to reproduce." [Gramene:pankaj_jaiswal, PATO:0001434, TO:Laurel_Cooper]
comment: Fertility or sterility are determined by either nonviable male and/or female plant structures or their incompatible interaction.
synonym: "sterility or fertility trait (related)" RELATED []
is_a: TO:0000387 ! plant trait

[Term]
id: TO:0000393
name: OBSOLETE yield and yield component
def: "OBSOLETE." []
is_obsolete: true

[Term]
id: TO:0000394
name: drought stress response trait
def: "A water stress response trait (TO:0000237) which is a response by a plant structure (PO:0009011) to growth conditions with lower than optimal water availability." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "dessication related trait (related)" RELATED []
is_a: TO:0000237 ! water stress response trait

[Term]
id: TO:0000396
name: grain yield trait
def: "A fruit yield trait (TO:0000871) that is the amount of grain." [RiceSES:SES, TO:contributors, TO:Laurel_Cooper]
comment: In rice, the grain yield is often measured in kilograms per hectare at 14 percent moisture, if the experiment was done on a field trial.
synonym: "caryopsis yield (exact)" EXACT []
synonym: "GRYLD (related)" RELATED []
synonym: "Yld (related)" RELATED []
xref: TO_GIT:242
is_a: TO:0000871 ! fruit yield trait

[Term]
id: TO:0000397
name: grain size
def: "A caryopsis fruit morphology trait (TO:0001079) which is the size of the grain (caryopsis fruit; PO:0030104)." [Gramene:pankaj_jaiswal, PO:0009084, TO:moorel]
comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large.
synonym: "GRSZ (exact)" EXACT []
is_a: TO:0001079 ! caryopsis fruit morphology trait

[Term]
id: TO:0000398
name: whole plant morphology trait
def: "A plant structure morphology trait (TO:0000839) which is a quality of a whole plant (PO:0000003)." [PO:0000003, TO:Laurel_Cooper]
is_a: TO:0000839 ! plant structure morphology trait

[Term]
id: TO:0000399
name: grain thickness
def: "A grain quality trait (TO:0000399) which is the thickness of a dehulled grain with a pericarp (PO:0009084)." [Gramene:pankaj_jaiswal, PO:0009084, TO:moorel]
synonym: "GRTH (related)" RELATED []
xref: TO_GIT:264
is_a: TO:0000162 ! grain quality trait
relationship: part_of TO:0000397 ! grain size

[Term]
id: TO:0000400
name: sterile lemma color
def: "A lemma morphology trait (TO:1000023) which is the color of the sterile lemma (PO:0009040)." [PATO:0000014, PO:0009040, RiceSES:SES, TO:Laurel_Cooper, TO:moorel]
comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
synonym: "SLmC (related)" RELATED []
synonym: "STLEMCL (related)" RELATED []
is_a: TO:1000023 {is_inferred="true"} ! lemma morphology trait
relationship: inheres_in PO:0009040 {is_inferred="true"} ! sterile lemma

[Term]
id: TO:0000401
name: plant growth hormone response
def: "A chemical stress sensitivity (TO:0000482) which is the tolerance exhibited by a plant or a group of plants (population) towards the plant growth hormone." [TO:Laurel_Cooper]
synonym: "growth regulator sensitivity (related)" RELATED []
synonym: "plant hormone response (related)" RELATED []
is_a: TO:0000482 ! chemical stress response

[Term]
id: TO:0000402
name: dehulled grain width
def: "A grain width (TO:0000975) which is the width of the dehulled grain with pericarp (PO:0009084)." [Gramene:pankaj_jaiswal, PO:0009084, TO:moorel]
comment: Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
synonym: "dehulled grain curved width (narrow)" NARROW []
synonym: "dehulled grain width (exact)" RELATED []
synonym: "DHULGRWD (exact)" RELATED []
synonym: "GRWD (broad)" RELATED []
synonym: "width of grain without hull (exact)" EXACT []
xref: PATO:0000921
xref: TO_GIT:123
is_a: TO:0000975 ! grain width

[Term]
id: TO:0000403
name: rice leaf folder response trait
alt_id: TO:0000192
def: "A Lepidoptera damage response trait (TO:0001162) which is caused by a rice leaf roller (Cnaphalocrocis medinalis)." [Gramene:pankaj_jaiswal, NCBITaxon:437488, RiceSES:SES, TO:Laurel_Cooper]
comment: Symptoms: larvae consume the leaf tissue except the epidermis, causing typical white streaks. They create a leaf tube during later stages of feeding.
synonym: "leaf roller response (related)" RELATED []
synonym: "LF (related)" RELATED []
synonym: "LFFRS (related)" RELATED []
is_a: TO:0001162 ! Lepidoptera damage response trait

[Term]
id: TO:0000404
name: nodal rooting
def: "Extent of rooting from the nodes on a stem." [Gramene:pankaj_jaiswal]
is_a: TO:0000361 ! stem morphology trait

[Term]
id: TO:0000405
name: caseworm response trait
def: "A Lepidoptera damage response trait (TO:0001162) which is caused by a caseworm (Parapoynx stagnalis)." [Gramene:pankaj_jaiswal, NCBITaxon:1234058, RiceSES:SES, TO:Laurel_Cooper]
comment: Symptoms: Larvae feed on leaf tissue, leaving only the papery upper epidermis.\nIn Rice SES it is referred to by the older name Nymphula depunctalis.
synonym: "CW (related)" RELATED []
synonym: "CWRS (related)" RELATED []
synonym: "float worm (related)" RELATED []
synonym: "hama putih (indonesian) (related)" RELATED []
synonym: "paddy caseworm (related)" RELATED []
is_a: TO:0001162 ! Lepidoptera damage response trait

[Term]
id: TO:0000406
name: panicle threshability
def: "A plant quality trait (TO:0000597) which is the percentage of shattered grains, determined by firmly grasping and pulling the hand over the panicle." [RiceSES:SES]
synonym: "PNTH (related)" RELATED []
synonym: "Thr (related)" RELATED []
is_a: TO:0000597 ! plant quality trait

[Term]
id: TO:0000407
name: OBSOLETE hoppers
def: "OBSOLETE." []
is_obsolete: true

[Term]
id: TO:0000408
name: starch hot paste viscosity
def: "A starch gelatinization trait (TO:0001167) which is the minimum viscosity that the starch slurry reaches during a holding period at a constant high temperature." [TO:Laurel_Cooper]
synonym: "HPVIS (related)" RELATED []
synonym: "trough viscosity (exact)" EXACT []
is_a: TO:0001167 ! starch gelatinization trait

[Term]
id: TO:0000409
name: starch peak viscosity trait
def: "A starch gelatinization trait (TO:0001167) which is maximum viscosity of a starch slurry as starch granules swell and absorb water during heating." [] {comment="TO:Laurel_Cooper"}
comment: This is the point of maximum viscosity, where starch granules are maximally swollen and have absorbed as much water as possible
synonym: "PVIS (related)" RELATED []
is_a: TO:0001167 ! starch gelatinization trait

[Term]
id: TO:0000410
name: polished rice protein content
def: "A grain protein content (TO:0001136) which is the amount of protein (CHEBI:36080) in a polished rice grain (caryopsis fruit; PO:0030104)." [Gramene:pankaj_jaiswal] {comment="TO:Laurel_Cooper"}
synonym: "POLRPROTCN (related)" RELATED []
is_a: TO:0001136 ! grain protein content

[Term]
id: TO:0000411
name: grain length to width ratio
def: "A caryopsis fruit morphology trait (TO:0001079) which is the ratio of grain length (TO:0000734) to grain width (TO:0002762), including the caryopsis hull (PO:0006000)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "GRLGWDRO (exact)" EXACT []
synonym: "SDLGWDRO (related)" RELATED []
is_a: TO:0001079 ! caryopsis fruit morphology trait

[Term]
id: TO:0000412
name: starch setback viscosity
def: "A starch gelatinization trait (TO:0001167) which is the difference between the peak viscosity (TO:0000409) and the cool paste viscosity (TO:0000379)." [Gramene:pankaj_jaiswal37, TO:Laurel_Cooper]
synonym: "setback (related)" RELATED []
synonym: "SETBK (related)" RELATED []
synonym: "SETBKVIS (related)" RELATED []
is_a: TO:0001167 ! starch gelatinization trait

[Term]
id: TO:0000413
name: rice tungro virus resistance
def: "Causal agent: Rice tungro bacilliform virus (RTBV) and rice tungro spherical virus (RTSV). The disease is transmitted by the green leafhopper Nephotettix spp. Symptoms: Yellow-to-yellow orange leaves, stunting and slightly reduced tillering." [Gramene:pankaj_jaiswal, http://www.fao.org/inpho/vlibrary/t0567e/T0567E03.htm, RiceSES:SES]
synonym: "RTD (related)" RELATED []
synonym: "RTVRS (related)" RELATED []
is_a: TO:0000148 ! viral disease response trait

[Term]
id: TO:0000414
name: white rice protein content
def: "A grain protein content (TO:0001136) which is the amount of protein (CHEBI:36080) in a white rice grain (caryopsis fruit; PO:0030104)." [TO:Laurel_Cooper]
synonym: "polished rice protein (related)" RELATED []
synonym: "protein content for polished rice (related)" RELATED []
synonym: "WHTRPROTCN (related)" RELATED []
is_a: TO:0001136 ! grain protein content

[Term]
id: TO:0000415
name: aborted bi-nucleate stage
def: "Abortion at bi-nucleate stage of microspore development." [Gramene:pankaj_jaiswal, RiceSES:SES]
comment: An example is CMS-HL in rice.
synonym: "BNUABR (related)" RELATED []
is_a: TO:0000218 ! pollen abortion type

[Term]
id: TO:0000416
name: embryo sac abortion
def: "A plant female sterility trait (TO:0000358) which is caused by abortion of the embryo sac (PO:0025074)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "EBSABR (related)" RELATED []
is_a: TO:0000358 ! plant female sterility

[Term]
id: TO:0000417
name: lemma and palea pubescence
def: "A lemma and palea morphology trait (TO:0000079) which is the extent of pubescence (hairs) on the lemma (PO:0009037) and palea (PO:0009038)." [PO:0009037, PO:0009038, RiceSES:SES, TO:moorel]
comment: Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down.
synonym: "LmPb (related)" RELATED []
xref: PATO:0001320
is_a: TO:0000079 ! flower bract morphology trait

[Term]
id: TO:0000418
name: rice bakanae disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Gibberella fujikuroi." [Gramene:pankaj_jaiswal, NCBITaxon:5127, RiceSES:SES, TO:Laurel_Cooper]
comment: Symptoms: the plant elongates abnormally, has few tillers and usually dies before producing grains.
synonym: "Bak (related)" RELATED []
synonym: "BKRS (related)" RELATED []
is_a: TO:0001145 ! Ascomycete fungal disease response

[Term]
id: TO:0000419
name: vascular leaf morphology trait
def: "A leaf morphology trait (TO:0000748) which is a quality of a vascular leaf (PO:0009025)." [Gramene:pankaj_jaiswal, PO:0009025, TO:Laurel_Cooper]
xref: TO_GIT:60
is_a: TO:0000748 ! leaf morphology trait
created_by: jaiswalp

[Term]
id: TO:0000420
name: plant fertility trait
def: "A plant reproductive trait (TO:0000392) which is the quality of being able to produce viable offspring." [TO:Laurel_Cooper]
is_a: TO:0000392 ! plant reproduction trait

[Term]
id: TO:0000421
name: pollen fertility
def: "A plant fertility trait (TO:0000420) which is the ability of pollen grains to successfully fertilize an ovule, leading to seed production" [TO:Laurel_Cooper]
synonym: "male fertility (exact)" EXACT []
synonym: "POFRT (related)" RELATED []
is_a: TO:0000420 ! plant fertility trait

[Term]
id: TO:0000422
name: rice narrow brown leaf spot disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Sphaerulina oryzina (Cercospora janseana)." [Gramene:pankaj_jaiswal, NCBITaxon:706553, RiceSES:SES, TO:Laurel_Cooper]
synonym: "NBLFSPRS (related)" RELATED []
synonym: "NBLS (related)" RELATED []
is_a: TO:0001145 ! Ascomycete fungal disease response

[Term]
id: TO:0000423
name: gall midge response trait
def: "A Diptera damage response trait (TO:0001163) which is caused by a rice gall midge (Orseolia oryzae)." [NCBITaxon:33408, RiceSES:SES, TO:Laurel_Cooper]
synonym: "GM (related)" RELATED []
synonym: "GMRS (related)" RELATED []
is_a: TO:0001163 ! Diptera damage response trait

[Term]
id: TO:0000424
name: brown planthopper response trait
def: "A Hemiptera damage response trait (TO:0001164) caused by a brown planthopper (Nilaparvata lugens)." [Gramene:pankaj_jaiswal, NCBITaxon:108931, RiceSES:SES, TO:Laurel_Cooper]
comment: Symptoms include partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting to death of plants. Infested areas in the field may be patchy.
synonym: "BPH (related)" RELATED []
synonym: "BPHRS (related)" RELATED []
is_a: TO:0001164 ! Hemiptera damage response trait

[Term]
id: TO:0000425
name: anther culturability
def: "An in vitro regeneration ability trait (TO:0000243) which is the ability to generate a haploid plantlet from an anther (PO:0009066) in culture." [TO:Laurel_Cooper]
synonym: "ANTCAB (related)" RELATED []
synonym: "anther culture response (related)" RELATED []
is_a: TO:0000243 ! in vitro regeneration ability

[Term]
id: TO:0000426
name: stem internode color
def: "A stem internode morphology trait (TO:0000756) which is the color of the stem internode (PO:0020142)." [RiceSES:SES, TO:Laurel_Cooper]
synonym: "CmlC (related)" RELATED []
synonym: "culm internode color (related)" RELATED []
synonym: "INCL (related)" RELATED []
xref: TO_GIT:317
xref: TO_GIT:64
is_a: TO:0000756 ! stem internode morphology trait
relationship: part_of TO:0000056 ! stem color

[Term]
id: TO:0000427
name: culm angle
def: "The angle of the culm with respect to the ground surface in a grass plant." [RiceSES:SES]
synonym: "CmA (related)" RELATED []
synonym: "CULMAG (related)" RELATED []
is_a: TO:0000577 ! stem angle

[Term]
id: TO:0000428
name: callus induction
def: "An in vitro regeneration ability trait (TO:0000243) which is the ability to generate a plant callus (PO:0005052) in culture." [TO:Laurel_Cooper]
synonym: "CAIND (related)" RELATED []
is_a: TO:0000243 ! in vitro regeneration ability

[Term]
id: TO:0000429
name: salt response
def: "Plant sensitivity observed in response to different concentrations of salt in the growth medium." [RiceSES:SES]
synonym: "Sal (related)" RELATED []
synonym: "saline sensitivity (related)" RELATED []
synonym: "SALTSN (related)" RELATED []
is_a: TO:0000482 ! chemical stress response

[Term]
id: TO:0000430
name: germination rate
def: "Rate of germination of the seed." [Gramene:pankaj_jaiswal]
synonym: "germination speed (related)" RELATED []
synonym: "GERMRATE (related)" RELATED []
synonym: "GERMSP (related)" RELATED []
is_a: TO:0000250 ! plant vigor trait

[Term]
id: TO:0000431
name: ear length
def: "An ear infructescence morphology trait (TO:0000976) that is the length of an ear infructescence (PO:0025597) from base to tip." [TO:Laurel_Cooper]
comment: Refers to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. In maize, this is measured in centimeters.
subset: Zea_mays
synonym: "ear infructescence length (exact)" EXACT []
synonym: "EARLG (related)" RELATED []
synonym: "earln (related)" RELATED [MaizeGDB_QTL:78112]
xref: MaizeGDB_QTL:78112
xref: PATO:0000122
xref: TO_GIT:132
is_a: TO:0000976 ! ear infructescence morphology trait

[Term]
id: TO:0000432
name: temperature stress response trait
def: "An abiotic plant stress response trait (TO:0000168) which is the response to temperature stress." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
is_a: TO:0000168 ! abiotic plant stress response trait

[Term]
id: TO:0000433
name: ear diameter
def: "An ear infructescence morphology trait (TO:0000976) that is the diameter of an ear infructescence (PO:0025597)." [Gramene:pankaj_jaiswal37, TO:Laurel_Cooper]
comment: Refers to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. In maize, this is measured in centimeters.
subset: Zea_mays
synonym: "ear infructescence diameter (exact)" EXACT []
synonym: "eard (related)" RELATED [MaizeGDB_QTL:78113]
synonym: "EARDIA (related)" RELATED []
xref: MaizeGDB_QTL:78113
xref: PATO:0001334
xref: TO_GIT:132
is_a: TO:0000976 ! ear infructescence morphology trait

[Term]
id: TO:0000434
name: root oxidative activity
def: "A plant vigor trait (TO:0000250) which is the oxidative power of a root (PO:0009005)." [PMID:12582488, TO:Laurel_Cooper]
comment: Root oxidative activity is highly correlated with the respiratory activity of roots. Roots with high oxidative activity may compete for carbohydrates during seedling growth, before seedlings are able to photosynthesize.
synonym: "RTACT (related)" RELATED []
is_a: TO:0000250 ! plant vigor trait

[Term]
id: TO:0000435
name: seed longevity
def: "A seed viability trait (TO:0000345) which is the length of time a seed stays viable." [TO:Laurel_Cooper]
synonym: "SDLNG (related)" RELATED []
is_a: TO:0000345 ! seed viability

[Term]
id: TO:0000436
name: spikelet sterility
def: "Determined by counting the filled and unfilled spikelets of the bagged grass inflorescence." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "SPKST (related)" RELATED []
is_a: TO:0000485 ! plant sterility trait

[Term]
id: TO:0000437
name: plant male sterility
def: "A plant sterility trait (TO:0000485) which is the incompetence of pollen (PO:0025281) to fertilize the plant egg cell (PO:0020094)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "degree of male sterility of male sterile lines (related)" RELATED []
synonym: "male sterility measure (related)" RELATED []
synonym: "MALEST (related)" RELATED []
synonym: "pollen sterility (exact)" EXACT []
is_a: TO:0000485 ! plant sterility trait

[Term]
id: TO:0000439
name: fungal disease response
def: "A microbial disease response (TO:0000112) trait which is the response to damage to a plant structure (PO:0009011) caused by an infection by a fungal pathogen (NCBITaxon:4751)." [Gramene:pankaj_jaiswal, NCBITaxon:4751, TO:Laurel_Cooper]
comment: Plant structure (PO:0009011) includes the whole plant (PO:0000003), as well as parts of a plant. Plants can exhibit varying degrees of resistance or susceptibility to fungal infections.
is_a: TO:0000112 ! microbial disease response

[Term]
id: TO:0000440
name: grain number per plant
def: "Number of grains (full grain with hull) present in one plant." [Gramene:pankaj_jaiswal37]
synonym: "GRNBPPT (related)" RELATED []
is_a: TO:0002759 ! grain number trait

[Term]
id: TO:0000441
name: OBSOLETE humidity related trait
def: "OBSOLETE" [TO:Laurel_Cooper]
is_obsolete: true

[Term]
id: TO:0000442
name: plant fresh weight
def: "Fresh weight of the plant." [Gramene:pankaj_jaiswal37]
synonym: "PLFWT (related)" RELATED []
is_a: TO:0000371 ! yield trait

[Term]
id: TO:0000443
name: ear infructescence number
def: "An infructescence yield trait (TO:0000936) that is the number of ears (ear infructescence; PO:0025597) on a plant or the average number present in population." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: To be used only for traits from maize.
synonym: "ear number per plant (related)" RELATED []
synonym: "EARNB (related)" RELATED []
synonym: "ears per plant (related)" RELATED []
synonym: "ENO (related)" RELATED []
synonym: "ENP (related)" RELATED []
xref: TO_GIT:244
is_a: TO:0000936 ! infructescence yield trait

[Term]
id: TO:0000444
name: parasitic weed
def: "A weed damage response trait (TO:0000347) which is caused by a plant which derives nutrients from other plants (their hosts) by attaching to them and penetrating their tissues." [TO:Laurel_Cooper]
is_a: TO:0000347 ! weed damage response trait

[Term]
id: TO:0000445
name: fruit seed number
alt_id: TO:0000139
def: "A fruit morphology trait (TO:0002629) which is the number of seeds (PO:0009010) in a fruit (PO:0009001)." [Gramene:pankaj_jaiswal, PO:0009001, PO:0009010]
synonym: "number of seeds per pod (narrow)" NARROW []
synonym: "pod seed number (narrow)" NARROW []
synonym: "SDNB (related)" RELATED []
is_a: TO:0002629 ! fruit morphology trait
relationship: part_of TO:0000905 ! seed yield trait

[Term]
id: TO:0000446
name: leaf drying
def: "A leaf morphology trait (TO:0000748) which is the drying of a leaf (PO:0025034)." [PO:0025034, TO:Laurel_Cooper, TO:moorel]
comment: May be a response to abiotic stress. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
synonym: "LFDRY (related)" RELATED []
is_a: TO:0000748 ! leaf morphology trait

[Term]
id: TO:0000447
name: filled grain number
alt_id: TO:0000438
def: "Determined by counting the number of spikelets filled with grain in one inflorescence (panicle)." [Gramene:pankaj_jaiswal]
comment: Another trait seed number (TO:0000445) is directly associated with it.
synonym: "FGRNB (exact)" EXACT []
synonym: "FILGRNB (related)" RELATED []
synonym: "filled fruit number (related)" RELATED []
synonym: "filled grain number per panicle (exact)" EXACT []
synonym: "grain number per panicle (sensu Oryza) (related)" RELATED []
synonym: "GRNBPPN (related)" RELATED []
synonym: "number of grains per panicle (exact)" EXACT []
is_a: TO:0002759 ! grain number trait

[Term]
id: TO:0000448
name: filled grain percentage
def: "Determined by counting the percent spikelets filled with grain in one grass inflorescence (panicle) or plant." [Gramene:pankaj_jaiswal]
synonym: "FGRPCENT (related)" RELATED []
synonym: "Filled grain percent per panicle (related)" RELATED []
is_a: TO:0002759 ! grain number trait

[Term]
id: TO:0000449
name: grain yield per plant
def: "Average weight of dehulled grains per plant." [Gramene:pankaj_jaiswal]
synonym: "GRYLDPPL (related)" RELATED []
is_a: TO:0000396 ! grain yield trait

[Term]
id: TO:0000450
name: grain yield per panicle
def: "Average weight of dehulled grains per panicle." [Gramene:pankaj_jaiswal]
synonym: "GRYLDPPN (exact)" EXACT []
is_a: TO:0000396 ! grain yield trait

[Term]
id: TO:0000451
name: large vascular bundle number to spikelet number ratio
def: "A ratio of number of large vascular bundles present in the spikelets to the number of spikelets in a grass inflorescence." [Gramene:pankaj_jaiswal]
synonym: "LVBNBSPKNBRO (related)" RELATED []
is_a: TO:0000456 ! spikelet number
is_a: TO:0000472 ! vascular bundle number

[Term]
id: TO:0000452
name: leaf area to spikelet number ratio
def: "A ratio of leaf area to the number of spikelets in a grass inflorescence." [Gramene:pankaj_jaiswal]
comment: Often measured using the flag leaf.
synonym: "LFARSPKNBRO (related)" RELATED []
is_a: TO:0000540 ! leaf area trait

[Term]
id: TO:0000453
name: panicle to tiller ratio
def: "A ratio of number of tiller bearing the panicles to the total number of tillers in rice." [Gramene:pankaj_jaiswal]
comment: Not all the tillers bear panicle.
synonym: "panicle tiller ratio (related)" RELATED []
synonym: "PNTIRO (related)" RELATED []
synonym: "productive tiller percent (related)" RELATED []
is_a: TO:0000371 ! yield trait

[Term]
id: TO:0000454
name: rice stem borer response trait
def: "A Lepidoptera damage response trait (TO:0001162) caused by a rice stem borer (Chilo suppressalis)." [Gramene:pankaj_jaiswal, NCBITaxon:168631, RiceSES:SES, TO:Laurel_Cooper]
synonym: "CULMBRRS (related)" RELATED []
synonym: "SB (related)" RELATED []
is_a: TO:0001162 ! Lepidoptera damage response trait

[Term]
id: TO:0000455
name: seed set percent
def: "An infructescence morphology trait (TO:0000920) which is the percent of seeds (PO:0009010) set in an infructescence (PO:0006342)." []
synonym: "percent seed set (related)" RELATED []
synonym: "SDSPCENT (related)" RELATED []
is_a: TO:0000920 ! infructescence morphology trait

[Term]
id: TO:0000456
name: spikelet number
def: "A spikelet morphology trait (TO:0000657) which is the average number of spikelets (PO:0009051) in one or more inflorescence (PO:0009049) (e.g. rice panicle) found in a plant or on all plants of a study." [Gramene:pankaj_jaiswal, PO:0009049, PO:0009051, TO:moorel]
synonym: "number of spikelets per panicle (related)" RELATED []
synonym: "spikelet number per panicle (related)" RELATED []
synonym: "SPKNB (related)" RELATED []
is_a: TO:0000373 ! inflorescence morphology trait

[Term]
id: TO:0000457
name: biomass yield
def: "A yield trait (TO:0000371) which is the amount of biomass obtained." [TO:Laurel_Cooper]
synonym: "dry matter yield (related)" RELATED []
synonym: "TBIOMYLD (related)" RELATED []
synonym: "total dry weight (related)" RELATED []
is_a: TO:0000371 ! yield trait

[Term]
id: TO:0000458
name: drought recovery
def: "Scores are taken after 10 days following soaking rain or watering- Indicate the degree of stress before recovery." [RiceSES:SES]
synonym: "DRR (related)" RELATED []
is_a: TO:0000394 ! drought stress response trait

[Term]
id: TO:0000459
name: root epidermal cell length
def: "Length of the root epidermal cell (PO:0025164)." [Gramene:pankaj_jaiswal37, TO:Laurel_Cooper]
synonym: "RTEPCELLG (related)" RELATED []
is_a: TO:0000043 ! root morphology trait
is_a: TO:0020107 ! plant cell length

[Term]
id: TO:0000460
name: light intensity response
def: "A light response trait (TO:0000075) which is the response to the intensity of light." [TO:Laurel_Cooper]
synonym: "light intensity sensitivity (related)" RELATED []
is_a: TO:0000075 ! light reponse trait

[Term]
id: TO:0000461
name: basic vegetative phase
def: "A vegetative growth time (TO:0000369) which is the period between seeding and heading when the plant is not sensitive to day length." [DOI:10.1016/j.stress.2024.100561, TO:Laurel_Cooper]
synonym: "BAVEGPH (related)" RELATED []
is_a: TO:0000369 ! vegetative growth time

[Term]
id: TO:0000462
name: starch gelatinization temperature
def: "A starch gelatinization trait (TO:0001167) which is the temperature at which a starch granule (GO:0043036) swells and absorbs water." [Gramene:pankaj_jaiswal, RiceSES:SES, TO:Laurel_Cooper]
comment: Changes in starch gelatinization with temperature are measured by monitoring the viscosity of a starch slurry during controlled heating, holding, and cooling temperature cycles.
synonym: "GELTZTMP (related)" RELATED []
is_a: TO:0001167 ! starch gelatinization trait

[Term]
id: TO:0000463
name: anthesis silking interval
def: "A difference of the average number of days between the maize tassel flowering and the first visible silk (stigma) on the maize ear." [Gramene:pankaj_jaiswal]
synonym: "ANTSKIT (related)" RELATED []
synonym: "ASI (related)" RELATED []
synonym: "FLWSLKINTER (related)" RELATED []
xref: MaizeGDB_QTL:62044
is_a: TO:0002616 ! flowering time trait

[Term]
id: TO:0000464
name: albino plantlet frequency
def: "An in vitro regeneration ability (TO:0000243) trait which is the frequency of the development of albino plantlets." [TO:Laurel_Cooper]
synonym: "ALBPTLDFQ (related)" RELATED []
is_a: TO:0000243 ! in vitro regeneration ability

[Term]
id: TO:0000465
name: mineral and ion content trait
def: "A biochemical trait (TO:0000277) that is the amount of a particular mineral or ion constituent occurring in a plant anatomical entity (PO:0025131)." [Gramene:pankaj_jaiswal]
comment: May be measured in a dry mass or in a fresh tissue.
is_a: TO:0000277 ! biochemical trait
created_by: jaiswalp

[Term]
id: TO:0000466
name: carbon content
def: "Amount of carbon present in the dry mass." [Gramene:pankaj_jaiswal]
synonym: "CBCN (related)" RELATED []
is_a: TO:0000465 ! mineral and ion content trait

[Term]
id: TO:0000467
name: cell membrane stability
def: "A drought stress response trait (TO:0000394) which is the changes in the stability of the cell membrane during water deficit stress." [Gramene:pankaj_jaiswal, https://plantstress.com/the-cell-membrane-stability-cms-test/, TO:Laurel_Cooper]
comment: The trait is observed by determining the amount of solutes and electrolytes which leak from the cell.
synonym: "CELMBSTB (related)" RELATED []
is_a: TO:0000394 ! drought stress response trait

[Term]
id: TO:0000468
name: rice leaf blast disease response
def: "A rice blast disease response (TO:0000074) caused by Pyricularia grisea (Magnaporthe grisea) affecting a leaf (PO:0009025)." [Gramene:pankaj_jaiswal, NCBITaxon:148305, RiceSES:SES, TO:Laurel_Cooper]
synonym: "Bl (related)" RELATED []
synonym: "LFBLRS (related)" RELATED []
is_a: TO:0000074 ! rice blast disease response

[Term]
id: TO:0000469
name: days to maturity
def: "A plant phenological trait (TO:0000933) which is the number of days from planting to the fruit ripening stage (PO:0025502) or seed maturation stage (PO:0007632)." [RiceSES:SES, TO:Laurel_Cooper]
synonym: "DTMT (related)" RELATED []
synonym: "Mat (related)" RELATED []
synonym: "time to harvest (narrow)" NARROW []
is_a: TO:0000933 ! plant phenological trait

[Term]
id: TO:0000470
name: vascular tissue morphology trait
def: "A portion of plant tissue morphology trait (TO:0000843) which is a quality of a vascular tissue and its parts." [Gramene:pankaj_jaiswal, TO:moorel]
is_a: TO:0000843 ! portion of plant tissue morphology trait

[Term]
id: TO:0000471
name: root penetration index
def: "Its the fraction of number of penetrated roots over the total number of roots." [Gramene:jcl, Gramene:pankaj_jaiswal]
synonym: "RTPNID (related)" RELATED []
is_a: TO:0000043 ! root morphology trait

[Term]
id: TO:0000472
name: vascular bundle number
def: "A plant structure morphology trait (TO:0000839) which is the number of vascular bundles (PO:0005020) in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
synonym: "VBNB (related)" RELATED []
is_a: TO:0000839 ! plant structure morphology trait

[Term]
id: TO:0000473
name: grain shattering
def: "Measurement of extent of grain shattering, which depends on development of abscission zone. This trait often refers to shattering or the premature or ease of shedding of the grass fruit called caryopsis from the inflorescence." [Gramene:pankaj_jaiswal]
synonym: "caryopsis shattering (related)" RELATED []
synonym: "GRSH (related)" RELATED []
is_a: TO:0001073 ! fruit shattering

[Term]
id: TO:0000474
name: glume opening
def: "Angle of opening of glumes is measured on each floret, assessment based on mean angle of glume opening." [Gramene:pankaj_jaiswal, RiceSES:SES]
synonym: "glume angle (related)" RELATED []
synonym: "opening of glume of male sterile lines (related)" RELATED []
is_a: TO:0000869 ! glume morphology trait

[Term]
id: TO:0000475
name: adventitious root thickness
def: "A root thickness (TO:0000306) trait which is the thickness of a shoot-borne root (PO:0000042)." [TO:Laurel_Cooper]
comment: Adventitious root can be a 'shoot-borne root' (PO:0000042) or one of the child terms- all have adventitious root as a broad synonym. Shoot-borne roots are still part of the root system (PO:0025025).
synonym: "ADVRTTH (related)" RELATED []
is_a: TO:0000306 ! root thickness

[Term]
id: TO:0000476
name: growth hormone content
def: "A metabolite content trait (TO:0000281) which is the amount of plant hormone (CHEBI:37848) in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
xref: CHEBI:37848
is_a: TO:0000281 ! metabolite content trait

[Term]
id: TO:0000477
name: rice panicle blast disease response
def: "A rice blast disease response (TO:0000074) caused by Pyricularia grisea (Magnaporthe grisea) affecting a panicle inflorescence (PO:0030123)." [Gramene:pankaj_jaiswal, NCBITaxon:148305, RiceSES:SES]
comment: Symptoms are dark necrotic lesions covering partially or completely around the panicle base (node) or the uppermost internode or the lower part.
synonym: "PB (related)" RELATED []
synonym: "PNBLRS (related)" RELATED []
is_a: TO:0000074 ! rice blast disease response

[Term]
id: TO:0000478
name: abscisic acid concentration
def: "Measures the growth hormone concentration in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
synonym: "ABA concentration (related)" RELATED []
synonym: "ABACONC (related)" RELATED []
synonym: "abscisic acid accumulation (related)" RELATED []
synonym: "abscisic acid content (related)" RELATED []
is_a: TO:0000476 ! growth hormone content

[Term]
id: TO:0000479
name: acid sensitivity
def: "Plant sensitivity to an acidic (pH<7) growth media." [Gramene:pankaj_jaiswal, TO:moorel]
synonym: "ADSN (related)" RELATED []
is_a: TO:0000254 ! response to pH

[Term]
id: TO:0000480
name: plant nutrient response trait
def: "A biochemical response trait (TO:0000277) which is the plant's response to an excess or deficient amount of the nutrients in the growth environment." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper, TO:moorel]
synonym: "nutrient deficiency (related)" RELATED []
is_a: TO:0000277 ! biochemical trait

[Term]
id: TO:0000481
name: alkali sensitivity
def: "Plant sensitivity to an alkali (pH>7) growth media." [Gramene:pankaj_jaiswal, TO:moorel]
synonym: "ALKSN (related)" RELATED []
is_a: TO:0000254 ! response to pH

[Term]
id: TO:0000482
name: chemical stress response
def: "An abiotic plant stress response trait (TO:0000168) which is the response of a plant structure (PO:0009011) to chemical stress." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
is_a: TO:0000168 ! abiotic plant stress response trait

[Term]
id: TO:0000483
name: germinability at low temperature
def: "Measure of the seed's germination ability at sub-permissive temperature levels." [Gramene:pankaj_jaiswal]
synonym: "GERMABITMP (related)" RELATED []
synonym: "germination ability at low temperature (related)" RELATED []
is_a: TO:0000653 ! seed growth and development trait
is_a: TO:0000931 ! seed quality trait

[Term]
id: TO:0000484
name: seed shape
def: "A seed morphology trait (TO:0000184) which is the shape of a seed (PO:0009010)." [Gramene:pankaj_jaiswal, PO:0009010, TO:moorel]
comment: Seed shape can be a component of seed quality (TO:0000162). Refers to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
synonym: "SDSHP (related)" RELATED []
xref: PATO:0000052
xref: TO_GIT:193
is_a: TO:0000184 ! seed morphology trait

[Term]
id: TO:0000485
name: plant sterility trait
def: "A plant reproductive trait (TO:0000392) which is the quality of not being able to produce viable offspring." [TO:Laurel_Cooper]
is_a: TO:0000392 ! plant reproduction trait

[Term]
id: TO:0000486
name: seed color
def: "A seed morphology trait (TO:0000184) which is the color of a seed (PO:0009010)." [Gramene:pankaj_jaiswal, PO:0009019, TO:moorel]
comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. In a seed this can be measured on the seed coat or the inside parts of a seed.
synonym: "SDCL (related)" RELATED []
xref: PATO:000014
xref: TO_GIT:192
is_a: TO:0000184 ! seed morphology trait

[Term]
id: TO:0000487
name: endosperm color
def: "An endosperm morphology trait (TO:0000575) which is the color of an endosperm (PO:0009089)." [Gramene:pankaj_jaiswal, PO:0009089, TO:moorel]
comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
synonym: "ENDCL (related)" RELATED []
xref: PATO:0000014
xref: TO_GIT:133
is_a: TO:0000575 ! endosperm morphology trait

[Term]
id: TO:0000488
name: OBSOLETE seed composition quality trait
def: "OBSOLETE" []
is_obsolete: true

[Term]
id: TO:0000489
name: OBSOLETE carbohydrate composition related trait
def: "OBSOLETE" []
is_obsolete: true

[Term]
id: TO:0000490
name: seed protein content
def: "A protein content trait (TO:0000598) which is the amount of protein (CHEBI:36080) in a seed (PO:0009010)." [TO:Laurel_Cooper]
is_a: TO:0000598 ! protein content

[Term]
id: TO:0000491
name: OBSOLETE fat and essential oil composition related trait
def: "OBSOLETE" []
is_obsolete: true

[Term]
id: TO:0000492
name: leaf shape
def: "A leaf morphology trait (TO:0000748) which is the variation in shapes and forms of a leaf (PO:0025034)." [Gramene:pankaj_jaiswal, PO:0025034, TO:Laurel_Cooper]
comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).  If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
synonym: "LFSHP (related)" RELATED []
xref: PATO:0000052
is_a: TO:0000748 ! leaf morphology trait

[Term]
id: TO:0000493
name: leaf composition trait
def: "A leaf morphology trait (TO:0000748) which is the composition of a leaf (PO:0025034)." [PO:0025034, TO:moorel]
comment: If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
is_a: TO:0000748 ! leaf morphology trait

[Term]
id: TO:0000494
name: plant pigment content trait
def: "A metabolite content trait (TO:0000281) which is the amount of a plant pigment in a plant strucuture." [TO:Laurel_Cooper]
is_a: TO:0000281 ! metabolite content trait

[Term]
id: TO:0000495
name: chlorophyll content
def: "A pigment content trait (TO:0000494) which is a measure of the chlorophyll a and/or chlorophyll b content in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Chlorophyll is the principal photoreceptor in photosynthesis, the light-driven process in which carbon dioxide is fixed to yield carbohydrates and oxygen. Chlorophyll is a cyclic tetrapyrolle, similar in structure to the heme group of globins (hemoglobin, myoglobin) and cytochromes. Chlorophyll differs from heme in a few major respects, most notably that the central metal ion in chlorophyll is magnesium while that in heme is iron.
synonym: "CHLCN (related)" RELATED []
is_a: TO:0000494 ! plant pigment content trait

[Term]
id: TO:0000496
name: carotenoid content
def: "The carotenoid content in a plant structure (PO:0009011). Includes naturally occurring tetra terpenes that are synthesized only in plants." []
synonym: "CRTCN (related)" RELATED []
is_a: TO:0000494 ! plant pigment content trait

[Term]
id: TO:0000497
name: OBSOLETE fertility restoration trait
def: "OBSOLETE" []
synonym: "RF (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000498
name: OBSOLETE female fertility restoration trait
def: "OBSOLETE Describes the extent of female fertility restoration in terms of percent seed set." [Gramene:pankaj_jaiswal]
synonym: "FEMRF (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000499
name: flower morphology trait
def: "A reproductive shoot system morphology trait (TO:0000786) which is a quality of a  flower (PO:0009046)." [Gramene:pankaj_jaiswal, PO:0009046, TO:Laurel_Cooper]
xref: TO_GIT:57
is_a: TO:0000786 ! reproductive shoot system morphology trait

[Term]
id: TO:0000501
name: spikelet weight
def: "A spikelet morphology trait (TO:0000657) which is the weight of a spikelet (PO:0009051)." [Gramene:pankaj_jaiswal, PO:0009051, TO:moorel]
comment: Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body.
synonym: "SPKWT (related)" RELATED []
xref: PATO:0000128
is_a: TO:0000657 ! spikelet morphology trait

[Term]
id: TO:0000502
name: potassium chlorate response
def: "Resistance to the KClO3 salt content in the growth medium." [Gramene:pankaj_jaiswal]
synonym: "KClO3 resistance (related)" RELATED []
synonym: "KCLO3RS (related)" RELATED []
is_a: TO:0002649 ! pesticide response

[Term]
id: TO:0000503
name: leaf rolling time
def: "A leaf rolling trait (TO:0000085) which is the measure of  time taken by the leaf to roll completely under drought or water stress." [Gramene:pankaj_jaiswal, TO:moorel]
synonym: "LFRLTM (related)" RELATED []
is_a: TO:0000085 ! leaf rolling response

[Term]
id: TO:0000504
name: leaf temperature
def: "A leaf morphology trait (TO:0000748) which is the leaf surface temperature." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper, TO:moorel]
comment: If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
synonym: "LFTMP (related)" RELATED []
is_a: TO:0000748 ! leaf morphology trait

[Term]
id: TO:0000505
name: leaf weight
def: "A leaf morphology trait (TO:0000505) which is the weight of a leaf (PO:0025034)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper, TO:moorel]
comment: If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
synonym: "LFWT (related)" RELATED []
is_a: TO:0000748 ! leaf morphology trait

[Term]
id: TO:0000506
name: nitrogen recycling
def: "It is a measure of reduced net ammonium production in response to the receipt of photosynthate." [Gramene:pankaj_jaiswal]
synonym: "NIRCYC (related)" RELATED []
synonym: "nitrogen conservation (related)" RELATED []
is_a: TO:0000283 ! biological process trait

[Term]
id: TO:0000507
name: osmotic adjustment capacity
def: "The ability of the plant to adust the osmotic potential under stress conditions." [Gramene:pankaj_jaiswal]
comment: The main role of osmotic adjustment in the plant is to assist in the maintenance of turgor and volume as organs lose water during desiccation, i.e. to provide dehydration tolerance. Often determined by relative water or the amount of solute accumulated at a given water potential.
synonym: "OSADJCAP (related)" RELATED []
is_a: TO:0000237 ! water stress response trait

[Term]
id: TO:0000508
name: penetrated root length
def: "Average maximum length of the root of a plant in a study that have penetrated to a predetermined soil depth." [Gramene:pankaj_jaiswal]
synonym: "PENRTLG (related)" RELATED []
is_a: TO:0000227 ! root length

[Term]
id: TO:0000510
name: penetrated to total root ratio
def: "A ratio of penetrated to total number of roots in a plant." [Gramene:pankaj_jaiswal]
synonym: "PENTRTRO (related)" RELATED []
is_a: TO:0000043 ! root morphology trait

[Term]
id: TO:0000511
name: phosphorus uptake
def: "A mineral and ion transport trait (TO:0020096) which involves phosphorus ion uptake in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "PHOUP (related)" RELATED []
is_a: TO:0020096 ! mineral and ion transport trait

[Term]
id: TO:0000512
name: plant survival percentage under submergence
def: "Percent of plants survived under submerged conditions." [Gramene:pankaj_jaiswal]
synonym: "PTSPCENTSUB (related)" RELATED []
is_a: TO:0000524 ! submergence tolerance

[Term]
id: TO:0000513
name: potassium concentration
def: "The total potassium ion concentration measured a plant structure (PO:0009011) or plant extract." [Gramene:pankaj_jaiswal]
synonym: "KCONC (related)" RELATED []
is_a: TO:0000609 ! potassium content

[Term]
id: TO:0000514
name: potassium uptake
def: "A mineral and ion transport trait (TO:0020096) which involves potassium ion uptake in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "KUP (related)" RELATED []
is_a: TO:0020096 ! mineral and ion transport trait

[Term]
id: TO:0000515
name: relative growth rate
def: "A plant vigor trait (TO:0000250) that is the increase in biomass in a defined period of time." [Gramene:pankaj_jaiswal, ISBN:9780044453734, TO:Laurel_Cooper]
comment: Relative growth rate may be calculated in various ways, usually as a rate of growth compared to the amount of starting biomass.  In some cases, it may be expressed as a percentage.
synonym: "RELGRATE (related)" RELATED []
xref: TO_GIT:418
is_a: TO:0000250 ! plant vigor trait

[Term]
id: TO:0000516
name: relative root length
def: "The relative length of the root determined after a given treatment as compared to the one determined under normal conditions." [Gramene:pankaj_jaiswal]
synonym: "RELRTLG (related)" RELATED []
is_a: TO:0000227 ! root length

[Term]
id: TO:0000517
name: relative shoot elongation under submergence
def: "Elongation of the shoot under submergence condition against a reference without submergence." [Gramene:pankaj_jaiswal]
synonym: "RELSHELSUB (related)" RELATED []
is_a: TO:0000170 ! shoot elongation under submergence

[Term]
id: TO:0000519
name: rooting depth
def: "It is calculated from the deepest soil layer where roots were present and the longest root measured in the layer." [Gramene:pankaj_jaiswal, PMID:12582650]
synonym: "maximum rooting depth (narrow)" NARROW []
synonym: "RTDP (related)" RELATED []
is_a: TO:0000043 ! root morphology trait

[Term]
id: TO:0000520
name: stomatal complex closure rate
def: "The rate of closure of stomata due to stress or coupled to the rate of photosynthesis and/or transpiration." [Gramene:pankaj_jaiswal]
synonym: "STOCSRRATE (related)" RELATED []
is_a: TO:0020095 ! stomatal process related trait

[Term]
id: TO:0000521
name: stomatal complex closure time
def: "A plant phenological trait (TO:0000933) which is the amount of time taken for a stomatal complex (PO:0002000) to close." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Stomatal complex closure may be due to stress, or coupled to the rate of photosynthesis and/or transpiration.
synonym: "STOCSRTM (related)" RELATED []
is_a: TO:0000933 ! plant phenological trait

[Term]
id: TO:0000522
name: stomatal conductance
def: "It is a numerical measure of the maximum rate of passage of either water vapour or carbon dioxide through the stomata." [Gramene:pankaj_jaiswal, Wikipedia:Stomatal_conductance]
synonym: "STOCOND (related)" RELATED []
is_a: TO:0020095 ! stomatal process related trait

[Term]
id: TO:0000523
name: stomatal resistance
def: "Stomatal resistance (or its inverse, stomatal conductance) can therefore be calculated from the transpiration rate and humidity gradient. (The humidity gradient is the humidity inside the leaf, determined from leaf temperature based on the assumption that the leaf's air spaces are saturated with vapor, minus the humidity of the ambient air, which is measured directly)." [Wikipedia:Stomatal_conductance]
comment: This allows scientists to learn how stomata respond to changes in environmental conditions, such as light intensity, humidity, or carbon dioxide concentration.
synonym: "STORS (related)" RELATED []
is_a: TO:0020095 ! stomatal process related trait

[Term]
id: TO:0000524
name: submergence tolerance
def: "A submergence response trait (TO:0000286) which is the ability to tolerate flooding or submergence in water." [TO:Laurel_Cooper]
synonym: "SUBTL (related)" RELATED []
is_a: TO:0000286 ! submergence response trait

[Term]
id: TO:0000525
name: sodium to potassium content ratio
def: "The ratio of total sodium to potassium ion content measured a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
synonym: "Na/K ratio (related)" RELATED []
synonym: "NAKRO (related)" RELATED []
synonym: "sodium to potassium ratio (related)" RELATED []
is_a: TO:0000465 ! mineral and ion content trait

[Term]
id: TO:0000526
name: sodium concentration
def: "The total sodium ion concentration measured in a given volume of a plant structure (PO:0009011) or plant extract." [Gramene:pankaj_jaiswal]
synonym: "NACONC (related)" RELATED []
is_a: TO:0000608 ! sodium content

[Term]
id: TO:0000527
name: sodium uptake
def: "A mineral and ion transport trait (TO:0020096) which involves sodium ion uptake in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "NAUP (related)" RELATED []
is_a: TO:0020096 ! mineral and ion transport trait

[Term]
id: TO:0000528
name: OBSOLETE total shoot elongation under submergence
def: "OBSOLETE" []
synonym: "TSHELSUB (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000529
name: abaxial stomatal frequency
def: "Number of stomata present on the abaxial surface of leaf." [Gramene:pankaj_jaiswal]
synonym: "ABXSTOFQ (related)" RELATED []
is_a: TO:0000566 ! leaf stomatal complex frequency

[Term]
id: TO:0000530
name: adaxial stomatal frequency
def: "Number of stomata present on the adaxial surface of leaf." [Gramene:pankaj_jaiswal]
synonym: "ADXSTOFQ (related)" RELATED []
is_a: TO:0000566 ! leaf stomatal complex frequency

[Term]
id: TO:0000531
name: anther length
def: "An anther morphology trait (TO:1000022) which is the length (PATO:0000122) of an anther (PO:0009066)." [TO:austin_meier, TO:ethan_johnson]
comment: Refers to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
synonym: "ANTLG (related)" RELATED []
xref: TO_GIT:385
is_a: TO:1000022 {is_inferred="true"} ! anther morphology trait
relationship: inheres_in PO:0009066 {is_inferred="true"} ! anther
relationship: part_of TO:0002609 ! stamen length

[Term]
id: TO:0000532
name: lemma apiculus hair length
def: "A cardinal organ part morphology trait (TO:0000754) which is the length of the hair of a lemma apiculus (PO:0025616)." [Gramene:pankaj_jaiswal]
synonym: "APIHLG (related)" RELATED []
synonym: "APIHRLG (related)" RELATED []
is_a: TO:0000754 ! cardinal organ part morphology trait

[Term]
id: TO:0000534
name: culm color
def: "Variation in the color of the culm of a grass plant." [Gramene:pankaj_jaiswal]
synonym: "CULMCL (related)" RELATED []
is_a: TO:0000056 ! stem color

[Term]
id: TO:0000536
name: spikelet floret color
def: "A spikelet floret morphology trait (TO:0000274) which is the color of a spikelet floret (PO:0009082)." [Gramene:pankaj_jaiswal, PATO:0000014, PO:0009082, TO:Laurel_Cooper]
comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
synonym: "FLCL (related)" RELATED []
xref: TO_GIT:105
is_a: TO:0000274 ! spikelet floret morphology trait

[Term]
id: TO:0000537
name: flower color
def: "A flower morphology trait (TO:0000499) which is the color of the flower (PO:0009046)." [Gramene:pankaj_jaiswal, PO:0009046, TO:moorel]
comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
synonym: "FLCL (related)" RELATED []
xref: PATO:0000014
is_a: TO:0000499 ! flower morphology trait

[Term]
id: TO:0000538
name: large vascular bundle number to leaf area ratio
def: "A ratio of the large sized vascular bundles to the leaf surface area." [Gramene:pankaj_jaiswal]
synonym: "LVBNBLFARRO (related)" RELATED []
is_a: TO:0000472 ! vascular bundle number

[Term]
id: TO:0000539
name: large vascular bundle number
def: "Number of the large sized vascular bundles." [Gramene:pankaj_jaiswal]
synonym: "LVBNB (related)" RELATED []
is_a: TO:0000472 ! vascular bundle number

[Term]
id: TO:0000540
name: leaf area trait
def: "A leaf morphology trait (TO:0000748) which is the total area of a leaf (PO:0025034)." [Gramene:pankaj_jaiswal, PO:0025034, TO:Laurel_Cooper]
comment: Refer to area (PATO:0001323): A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
synonym: "LFAR (related)" RELATED []
xref: PATO:0001323
is_a: TO:0000748 ! leaf morphology trait

[Term]
id: TO:0000541
name: leaf position
def: "A leaf morphology trait (TO:0000748) which is the position of the leaf (PO:0025034) on the plant." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Refers to: position (PATO_0000140): A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity. Usually measured from the ground.  If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
synonym: "leaf height (related)" RELATED []
synonym: "LFHT (related)" RELATED []
xref: PATO:0000140
xref: TO_GIT:226
is_a: TO:0000748 ! leaf morphology trait

[Term]
id: TO:0000542
name: leaf length to width ratio
def: "A leaf morphology trait (TO:0000748) which is the ratio of leaf length (TO:0000135) to leaf width (TO:0000370)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
synonym: "LFLGWDRO (related)" RELATED []
is_a: TO:0000748 ! leaf morphology trait
relationship: part_of TO:0002637 ! leaf size

[Term]
id: TO:0000543
name: leaf nitrogen content
def: "A leaf composition trait (TO:0000493) which is the amount of nitrogen (CHEBI:51143) in the leaf (PO:0025034)." [CHEBI:51143]
synonym: "LFNICN (related)" RELATED []
xref: CHEBI:51143
is_a: TO:0000493 ! leaf composition trait

[Term]
id: TO:0000544
name: mesocotyl length
def: "A mesocotyl morphology trait (TO:0000758) which is the length of a mesocotyl (PO:0020037)." [Gramene:pankaj_jaiswal, PO:0020037, TO:Laurel_Cooper]
synonym: "MCTLG (related)" RELATED []
xref: PATO:0000122
xref: TO_GIT:64
is_a: TO:0000758 ! mesocotyl morphology trait

[Term]
id: TO:0000545
name: panicle base to lowest branch
def: "A panicle inflorescence morphology trait (TO:0000847) which is the length of the region between the panicle base to the lowest (the first) primary panicle branch." [Gramene:pankaj_jaiswal, TO:moorel]
comment: Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points.
synonym: "panicle base to first primary branch (related)" RELATED []
synonym: "panicle base to lowest primary panicle branch (related)" RELATED []
synonym: "peduncle length from panicle base to first primary branch (related)" RELATED []
synonym: "PNBLBR (related)" RELATED []
xref: PATO:0000122
is_a: TO:0000847 ! panicle inflorescence morphology trait

[Term]
id: TO:0000546
name: peduncle top diameter
def: "A peduncle morphology trait (TO:0000776) which is the diameter at the tip of the peduncle (PO:0009053)." [Gramene:pankaj_jaiswal, PO:0009053, TO:Laurel_Cooper]
comment: Refers to the diameter ((PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary) of the tip of a peduncle (PO:0009053).
synonym: "PDTDIA (related)" RELATED []
xref: PATO:0001334
xref: TO_GIT:88
is_a: TO:0000776 ! peduncle morphology trait

[Term]
id: TO:0000547
name: primary inflorescence branch number
def: "A primary branch of inflorescence (TO:0000052) trait which is the number of primary branches present in the inflorescence (PO:0009049)." [Gramene:pankaj_jaiswal, PO:0009049, TO:moorel]
synonym: "NPB (related)" RELATED []
synonym: "number of primary rachis branches (related)" RELATED []
synonym: "number of second order inflorescence axes (exact)" EXACT []
synonym: "panicle primary branch number (related)" RELATED []
synonym: "PBRNB (related)" RELATED []
synonym: "PRB (related)" RELATED []
synonym: "primary branches per panicle (related)" RELATED []
is_a: TO:0000052 ! primary branching of inflorescence

[Term]
id: TO:0000548
name: rhizome number
def: "A shoot system morphology trait (TO:0000077) which is the number of rhizomes present in a shoot system (PO:0009006)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "rhizome number per plant (related)" RELATED []
synonym: "RHZNB (related)" RELATED []
is_a: TO:0000077 ! shoot system morphology trait

[Term]
id: TO:0000549
name: rhizome morphology trait
def: "A shoot axis morphology trait (TO:0000739) which is a quality of a rhizome (PO:0004542)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
is_a: TO:0000739 ! shoot axis morphology trait

[Term]
id: TO:0000550
name: rhizome branch angle
def: "A rhizome morphology trait (TO:0000549) which is the angle of a branch (PO:0025073) on a rhizome (PO:0004542) ." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "rhizome branching degree (related)" RELATED []
synonym: "RHZBRAG (related)" RELATED []
is_a: TO:0000549 ! rhizome morphology trait

[Term]
id: TO:0000551
name: rhizome branch number
def: "A rhizome morphology trait (TO:0000549) which is the number of branches (PO:0025073) on a rhizome (PO:0004542)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "rhizome branching number per plant (related)" RELATED []
synonym: "RHZBRNB (related)" RELATED []
is_a: TO:0000549 ! rhizome morphology trait

[Term]
id: TO:0000552
name: shoot dry weight
def: "The dry weight of the shoot without inflorescence." [Gramene:pankaj_jaiswal37]
synonym: "SHDWT (related)" RELATED []
synonym: "total shoot dry weight (related)" RELATED []
is_a: TO:0000568 ! shoot axis weight
relationship: part_of TO:0000352 ! plant dry weight

[Term]
id: TO:0000553
name: rhizome length
def: "A rhizome morphology trait (TO:0000549) which is the length of a rhizome (PO:0004542)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "average rhizome length (related)" RELATED []
synonym: "RHZLG (related)" RELATED []
is_a: TO:0000549 ! rhizome morphology trait

[Term]
id: TO:0000554
name: rhizome internode length
def: "A rhizome morphology trait (TO:0000549) which is the length of a rhizome internode (PO:0025204)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "average rhizome internode length (related)" RELATED []
synonym: "RHZINLG (related)" RELATED []
is_a: TO:0000549 ! rhizome morphology trait

[Term]
id: TO:0000555
name: rhizome internode number
def: "A rhizome morphology trait (TO:0000549) which is the number of rhizome internodes (PO:0025204)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "average rhizome internode number (related)" RELATED []
synonym: "RHZINNB (related)" RELATED []
is_a: TO:0000549 ! rhizome morphology trait

[Term]
id: TO:0000556
name: rhizome dry weight
def: "A rhizome morphology trait (TO:0000549) which is the dry weight of a rhizome (PO:0004542)." [TO:Laurel_Cooper]
synonym: "rhizome dry weight per plant (related)" RELATED []
synonym: "RHZDWT (related)" RELATED []
is_a: TO:0000549 ! rhizome morphology trait
relationship: part_of TO:0000352 ! plant dry weight

[Term]
id: TO:0000557
name: secondary  inflorescence branch number
def: "A secondary branching of inflorescence (TO:0000142) trait which is the number of secondary branches in an inflorescence (PO:0009049)." [Gramene:pankaj_jaiswal, PO:0009049, TO:moorel]
synonym: "number of third order inflorescence axes (exact)" EXACT []
synonym: "SBRNB (related)" RELATED []
synonym: "secondary branches per panicle (related)" RELATED []
is_a: TO:0000142 ! secondary branching of inflorescence

[Term]
id: TO:0000558
name: small vascular bundle number
def: "Number of small sized vascular bundles present in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
synonym: "SVBNB (related)" RELATED []
is_a: TO:0000472 ! vascular bundle number

[Term]
id: TO:0000559
name: plant volume
def: "Space occupied by the plant." [Gramene:pankaj_jaiswal]
synonym: "SP (related)" RELATED []
synonym: "space (related)" RELATED []
is_a: TO:0000398 ! whole plant morphology trait

[Term]
id: TO:0000560
name: space per culm
def: "Space occupied by each culm or the tiller in a plant." [Gramene:pankaj_jaiswal]
synonym: "SPPCULM (related)" RELATED []
synonym: "tiller volume (related)" RELATED []
is_a: TO:0000361 ! stem morphology trait

[Term]
id: TO:0000561
name: space to culm ratio
def: "A ratio of total space or volume occupied by the whole plant to the total number of culms or tiller in the plant." [Gramene:pankaj_jaiswal]
synonym: "SPCULMRO (related)" RELATED []
is_a: TO:0000559 ! plant volume

[Term]
id: TO:0000562
name: specific leaf area
def: "A leaf area trait (TO:0000540) that is the ratio of the leaf area to the leaf weight (TO:0000505)." [TO:Laurel_Cooper]
synonym: "leaf specific area (exact)" EXACT []
synonym: "SLA (related)" RELATED []
synonym: "SLFAR (related)" RELATED []
xref: MaizeGDB_QTL:247869
xref: TO_GIT:271
is_a: TO:0000540 ! leaf area trait

[Term]
id: TO:0000563
name: spikelet length to width ratio
def: "A spikelet morphology trait (TO:0000657) which is the ratio of length to the width of a spikelet (PO:0009051)." [Gramene:pankaj_jaiswal, PO:0009051, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.\nRefer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
synonym: "SPKLGWDRO (related)" RELATED []
xref: PATO:0000122
xref: PATO:0000921
is_a: TO:0000657 ! spikelet morphology trait

[Term]
id: TO:0000564
name: spikelet width
def: "A spikelet morphology trait (TO:0000657) which is the width of the spikelets (PO:0009051) present in a grass inflorescence." [Gramene:pankaj_jaiswal, PO:0009051, TO:moorel]
comment: Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
synonym: "SPKWD (related)" RELATED []
xref: PATO:0000921
is_a: TO:0000657 ! spikelet morphology trait

[Term]
id: TO:0000565
name: spikelets per panicle length
def: "Number of spikelets present in the rice panicle per unit length." [Gramene:pankaj_jaiswal]
synonym: "number of spikelets per cm panicle length (related)" RELATED []
synonym: "spikelet number per panicle length (related)" RELATED []
synonym: "SPKPPNLG (related)" RELATED []
is_a: TO:0000456 ! spikelet number

[Term]
id: TO:0000566
name: leaf stomatal complex frequency
def: "A vascular leaf morphology trait (TO:0000419) which is the number of leaf stomatal complexes (PO:0025183) present on the leaf surface." [Gramene:pankaj_jaiswal]
synonym: "STOFQ (related)" RELATED []
is_a: TO:0000419 ! vascular leaf morphology trait

[Term]
id: TO:0000567
name: tiller angle
def: "A basal axillary shoot system morphology trait (TO:0001168) which is the angle of a tiller." [TO:Laurel_Cooper]
synonym: "TIAG (related)" RELATED []
is_a: TO:0001168 ! basal axillary shoot system morphology trait

[Term]
id: TO:0000568
name: shoot axis weight
def: "A shoot axis morphology trait (TO:0000739) which is the weight of a shoot axis." [Gramene:pankaj_jaiswal37, TO:Laurel_Cooper]
synonym: "SHWT (related)" RELATED []
synonym: "total shoot weight (related)" RELATED []
is_a: TO:0000739 ! shoot axis morphology trait
relationship: part_of TO:0000327 ! shoot system yield trait

[Term]
id: TO:0000569
name: OBSOLETE white-backed planthopper egg mortality
def: "OBSOLETE" []
synonym: "WBPH egg mortality (related)" RELATED []
synonym: "WBPHOVI (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000570
name: OBSOLETE watery lesion percentage
def: "OBSOLETE" [TO:Laurel_Cooper]
synonym: "percentage of watery lesion (related)" RELATED []
synonym: "WLPCENT (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000571
name: shoot fresh weight
def: "Fresh weight of the shoot without inflorescence." [Gramene:pankaj_jaiswal37]
synonym: "SHFWT (related)" RELATED []
synonym: "total shoot fresh weight (related)" RELATED []
is_a: TO:0000568 ! shoot axis weight
relationship: part_of TO:0000442 ! plant fresh weight

[Term]
id: TO:0000572
name: petal color
def: "A petal morphology trait (TO:0000863) which is the color of a petal (PO:0009032)." [Gramene:pankaj_jaiswal, PO:0009032, TO:moorel]
comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
xref: PATO:0000014
is_a: TO:0000863 ! petal morphology trait
relationship: part_of TO:0000537 ! flower color

[Term]
id: TO:0000573
name: sepal color
def: "A sepal morphology trait (TO:0000864) which is the color of a sepal (PO:0009031) in a flower (PO:0009049)." [Gramene:pankaj_jaiswal, PO:0009031, PO:0009049, TO:moorel]
comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
xref: PATO:0000014
is_a: TO:0000864 ! sepal morphology trait
relationship: part_of TO:0000537 ! flower color

[Term]
id: TO:0000574
name: tepal color
def: "A tepal morphology trait (TO:0000865) which is the color of a tepal (PO:0009033)." [Gramene:pankaj_jaiswal, PO:0009033, TO:moorel]
comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
xref: PATO:0000014
is_a: TO:0000865 ! tepal morphology trait
relationship: part_of TO:0000537 ! flower color

[Term]
id: TO:0000575
name: endosperm morphology trait
def: "A portion of plant tissue morphology trait (TO:0000843) which is a quality of an endosperm (PO:0009089)." [PO:0009089, TO:moorel]
xref: TO_GIT:133
is_a: TO:0000843 ! portion of plant tissue morphology trait

[Term]
id: TO:0000576
name: stem length
alt_id: TO:0000309
def: "A stem morphology trait (TO:0000361) which is the length of the stem (PO:0009047)." [Gramene:pankaj_jaiswal37, PO:0009047, TO:moorel]
comment: Often measured from soil surface to highest point on stem.\nRefer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
synonym: "CmL (related)" RELATED []
synonym: "core length (narrow)" NARROW []
synonym: "culm height (related)" RELATED []
synonym: "culm length (related)" RELATED []
synonym: "CULMLG (related)" RELATED []
synonym: "stem height (related)" RELATED []
synonym: "STEMLG (related)" RELATED []
xref: PATO:0000122
xref: TO_GIT:157
is_a: TO:0000361 ! stem morphology trait
relationship: part_of TO:0000207 ! plant height
relationship: part_of TO:0000892 ! stem size

[Term]
id: TO:0000577
name: stem angle
def: "A stem morphology trait (TO:0000361) which is the angle of a stem (PO:0009047)." [Gramene:pankaj_jaiswal, PO:0009047, TO:moorel]
comment: Refer to angle (PATO:0002326): An orientation inhering in a bearer by virtue of the bearer's placement at an angle.
synonym: "STEMAG (related)" RELATED []
xref: PATO:0002326
is_a: TO:0000361 ! stem morphology trait

[Term]
id: TO:0000578
name: root fresh weight
def: "The average fresh weight of the root determined in a study." [Gramene:pankaj_jaiswal37]
synonym: "RTFWT (related)" RELATED []
synonym: "total root fresh weight (related)" RELATED []
is_a: TO:0000279 ! root weight
relationship: part_of TO:0000442 ! plant fresh weight

[Term]
id: TO:0000579
name: root dry weight to tiller number ratio
def: "The trait is an indirect measure of the balance between water absorption and transpiration." [Gramene:pankaj_jaiswal37]
synonym: "deep root dry weight to tiller number ratio (related)" RELATED []
synonym: "RTDWTTINBRO (related)" RELATED []
is_a: TO:0000078 ! root dry weight

[Term]
id: TO:0000580
name: cytoplasmic male sterility
def: "A plant male sterility trait (TO:0000437) which is caused by genes located in the maternal mitochondrial genome, leading to non-functional pollen." [TO:Laurel_Cooper]
is_a: TO:0000437 ! plant male sterility

[Term]
id: TO:0000581
name: inflorescence color
def: "An inflorescence morphology trait (TO:0000373) which is the color of an inflorescence (PO:0009049)." [Gramene:pankaj_jaiswal, PO:0009049, TO:Laurel_Cooper]
comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
synonym: "head color (narrow)" NARROW []
xref: PATO:0000014
xref: TO_GIT:92
xref: TO_GIT:97
is_a: TO:0000373 ! inflorescence morphology trait

[Term]
id: TO:0000582
name: inflorescence number
def: "A reproductive shoot system morphology trait (TO:0000786) which is the number of inflorescences (PO:0009049)." [Gramene:pankaj_jaiswal, PO:0009049, TO:Laurel_Cooper, TO:moorel]
comment: Refer to number of (PATO:0001555): The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
synonym: "INFLONB (related)" RELATED []
xref: PATO:0001555
xref: TO_GIT:97
is_a: TO:0000786 ! reproductive shoot system morphology trait

[Term]
id: TO:0000583
name: infructescence weight
def: "An infructescence morphology trait (TO:0000920) that is the average weight (mass) of an infructescence bearing mature fruit (PO:0009001)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Refers to mass (PATO:0000125): A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.
xref: TO_GIT:244
is_a: TO:0000920 ! infructescence morphology trait

[Term]
id: TO:0000586
name: seminal root length
def: "A root length (TO:0000227) that is the length of one or more seminal roots (PO:0000046)." [Gramene:pankaj_jaiswal37, TO:austin_meier, TO:seymour_megan]
comment: Seminal root is the primary root originating in a plant after germination.\nRefer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
xref: PATO:0000122
xref: TO_GIT:365
is_a: TO:0000227 ! root length

[Term]
id: TO:0000587
name: endosperm quality
alt_id: TO:0000150
def: "A seed quality trait (TO:0000931) which is the quality of the endosperm (PO:0009089) texture, content, composition, size, etc." [Gramene:pankaj_jaiswal, PO:0009089]
synonym: "End (related)" RELATED []
synonym: "endosperm quality (sensu Poaceae) (related)" RELATED []
is_a: TO:0000931 ! seed quality trait

[Term]
id: TO:0000589
name: average grain weight
alt_id: TO:0000509
def: "A grain weight (TO:0000919) which is the average weight of a grain (caryopsis fruit; PO:0030104), including the caryopsis hull (PO:0006000)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: The average grain weight (TO:0000589) can be used to calculate the overall yield or produce from a field.
xref: TO_GIT:245
is_a: TO:0000919 ! grain weight

[Term]
id: TO:0000590
name: dehulled grain weight
def: "A grain weight (TO:0000919) which is the weight a dehulled grain (caryopsis fruit;  PO:0030104)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Dehulling is the process of removing the caryopsis hull (PO:0006000), which consists of a dried lemma (PO:0009037) and a dried palea (PO:0009037).
synonym: "DHULGRWT (related)" RELATED []
synonym: "GRWT (broad)" BROAD []
xref: TO_GIT:242
is_a: TO:0000919 ! grain weight

[Term]
id: TO:0000591
name: 100-dehulled grain weight
def: "A dehulled grain weight (TO:0000590) which is the weight of a sample of 100 dehulled grains (caryopsis fruit; PO:0030104)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "HDGRWT (broad)" BROAD []
synonym: "HDHULGRWT (exact)" EXACT []
synonym: "hundred dehulled grain weight (exact)" EXACT []
synonym: "hundred grain weight (broad)" BROAD []
is_a: TO:0000590 ! dehulled grain weight

[Term]
id: TO:0000592
name: 1000-dehulled grain weight
def: "A dehulled grain weight (TO:0000590) which is the weight of a sample of 1000 dehulled grains (caryopsis fruit; PO:0030104) ." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "TDGRWT (related)" RELATED []
synonym: "TDHULGRWT (exact)" EXACT []
synonym: "thousand dehulled grain weight (exact)" EXACT []
synonym: "thousand grain weight (broad)" BROAD []
is_a: TO:0000590 ! dehulled grain weight

[Term]
id: TO:0000593
name: polished grain weight
def: "A grain weight (TO:0000919) which is the weight of a polished grain (caryopsis fruit; PO:0030104)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Polishing removes the bran, which consists of aleurone layer (PO:0005360), pericarp; (PO:0009084) and the germ (plant embryo; PO:0009009).  In rice, this is what is referred to as 'white rice'.
synonym: "PLSGRWT (exact)" EXACT []
is_a: TO:0000919 ! grain weight

[Term]
id: TO:0000594
name: 100-polished grain weight
def: "A polished grain weight (TO:0000593) which is the weight of a sample of 100 polished grains." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "HPLSGRWT (exact)" EXACT []
synonym: "hundred polished grain weight (exact)" EXACT []
is_a: TO:0000593 ! polished grain weight

[Term]
id: TO:0000595
name: 1000-polished grain weight
def: "A polished grain weight (TO:0000593) which is the weight of a sample of 1000 polished grains." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "thousand polished grain weight (exact)" EXACT []
synonym: "TPLSGRWT (exact)" EXACT []
is_a: TO:0000593 ! polished grain weight

[Term]
id: TO:0000596
name: OBSOLETE plant volume (sensu Poaceae)
def: "OBSOLETE." []
is_obsolete: true

[Term]
id: TO:0000597
name: plant quality trait
def: "A plant trait (TO:0000387) that contributes to the overall utility, nutritional, or economic value of a plant, plant structure (PO:0009011) or plant product" [Gramene:pankaj_jaiswal, ISBN:9781118313718, TO:Laurel_Cooper]
comment: Quality traits of a plant, plant structure or plant product vary from crop production to food consumption factors and may include organoleptic properties (flavor, aroma, appearance, texture, etc), storability, processing qualities and nutritional aspects. Market quality standards for crops are based on complex interaction of social, economic and biological factors and are highly crop-specific (Acquaah, 2012).\n\nPlant traits from other upper level classes may contribute to (as part_of children) to specific plant quality traits.
xref: TO_GIT:260
is_a: TO:0000387 ! plant trait
created_by: jaiswalp

[Term]
id: TO:0000598
name: protein content
def: "A metabolite content trait (TO:0000281) which is the amount of protein (CHEBI:36080) in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal37] {comment="TO:Laurel_Cooper"}
synonym: "PROTCN (related)" RELATED []
synonym: "total protein content (narrow)" NARROW []
is_a: TO:0000281 ! metabolite content trait

[Term]
id: TO:0000599
name: enzyme activity trait
def: "A biochemical trait which is a quality of an enzymatic reaction." [GO:000382, TO:Laurel_Cooper]
comment: Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
synonym: "enzymatic activity (related)" RELATED []
synonym: "enzyme catalytic activity (related)" RELATED []
xref: TO_GIT:380
is_a: TO:0000277 ! biochemical trait

[Term]
id: TO:0000600
name: UV-A light sensitivity
def: "Response shown by the plant in the presence of UV-A light stress." [Gramene:pankaj_jaiswal]
synonym: "Ultraviolet-A light sensitivity (related)" RELATED []
synonym: "Ultraviolet-A resistance (related)" RELATED []
synonym: "UV-A resistance (related)" RELATED []
synonym: "UVARS (related)" RELATED []
is_a: TO:0000160 ! UV light sensitivity

[Term]
id: TO:0000601
name: UV-B light sensitivity
def: "Response shown by the plant in the presence of UV-B light stress." [Gramene:pankaj_jaiswal]
synonym: "Ultraviolet-A light sensitivity (related)" RELATED []
synonym: "Ultraviolet-B resistance (related)" RELATED []
synonym: "UV-B resistance (related)" RELATED []
synonym: "UVBRS (related)" RELATED []
is_a: TO:0000160 ! UV light sensitivity

[Term]
id: TO:0000602
name: OBSOLETE total fat content
def: "OBSOLETE The total fat or lipid content of a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
synonym: "FATCN (related)" RELATED []
synonym: "lipid content (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000603
name: magnesium to potassium content ratio
def: "The ratio of total magnesium to potassium ion content measured a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
synonym: "Magnesium to potassium ratio (related)" RELATED []
synonym: "MGKCNRO (related)" RELATED []
synonym: "ratio of magnesium to potassium (related)" RELATED []
is_a: TO:0000465 ! mineral and ion content trait

[Term]
id: TO:0000604
name: lipid content trait
def: "A metabolite content trait (TO:0000281) which is the amount of lipid in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Lipids are triglycerides, esters of three fatty acid units joined to glycerol, a trihydroxy alcohol. A triglyceride is called a fat if it is a solid at 25°C; it is called an oil if it is a liquid at that temperature. Fats have a predominance of saturated fatty acids, and oils are composed largely of unsaturated acids.
synonym: "fat and oil content (exact)" EXACT []
synonym: "fat content (narrrow)" NARROW []
synonym: "oil content (narrow)" NARROW []
is_a: TO:0000281 ! metabolite content trait

[Term]
id: TO:0000605
name: hydrogen peroxide content
def: "A metabolite content trait (TO:0000281) which is the amount of hydrogen peroxide or the peroxide reactive ion in a plant structure." [Gramene:pankaj_jaiswal]
synonym: "H2O2 content (related)" RELATED []
synonym: "H2O2CN (related)" RELATED []
is_a: TO:0000281 ! metabolite content trait
is_a: TO:0002657 ! oxidative stress response

[Term]
id: TO:0000606
name: diastatic power
def: "An assay to determine the joint action of alpha-amylase, beta-amylase and any other carbohydrate-degrading enzymes." [DOI:10.1007/s001220051466]
synonym: "DIASPWR (related)" RELATED []
is_a: TO:0000599 ! enzyme activity trait

[Term]
id: TO:0000607
name: ash content
def: "The total mineral or ion content measured after drying and burning a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
is_a: TO:0000465 ! mineral and ion content trait

[Term]
id: TO:0000608
name: sodium content
def: "A mineral and ion content trait (TO:0000465) which is the sodium cation (CHEBI:29101) composition in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
is_a: TO:0000465 ! mineral and ion content trait

[Term]
id: TO:0000609
name: potassium content
def: "A mineral and ion content trait (TO:0000465) which is the potassium cation (CHEBI:29103) composition in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
is_a: TO:0000465 ! mineral and ion content trait

[Term]
id: TO:0000610
name: soluble to total protein ratio
def: "The ratio of soluble protein to total protein content is a measure of the degree of proteolysis." [DOI:10.1007/s001220051466]
comment: As seen in degree of modification of grain to malt in barley.
synonym: "Soluble protein to total protein content ratio (related)" RELATED []
synonym: "STPROTRO (related)" RELATED []
is_a: TO:0000598 ! protein content

[Term]
id: TO:0000611
name: malt-extract percentage
def: "It is a measure of the sugars and nitrogenous compounds available for yeast nutrition." [DOI:10.1007/s001220051466]
synonym: "malt-extract percent (related)" RELATED []
synonym: "MALTEXTPCENT (related)" RELATED []
is_a: TO:0001070 ! brewing quality trait

[Term]
id: TO:0000612
name: grain density
def: "A caryopsis fruit morphology trait (TO:0001079) which is a measure of the density or weight per unit of volume of a grain at a standardized moisture level." [DOI:10.1007/s001220051466, TO:Laurel_Cooper]
synonym: "test weight (related)" RELATED []
xref: TO_GIT:262
is_a: TO:0001079 ! caryopsis fruit morphology trait
relationship: part_of TO:0000162 ! grain quality trait

[Term]
id: TO:0000613
name: groat percentage
def: "A grain quality trait (TO:0000162) which is the amount of hull-less kernels obtained after de-hulling, expressed as a percentage of the weight of the sample." [TO:Laurel_Cooper]
comment: This trait is most commonly used in determining the milling quality of oats.
synonym: "caryopsis percentage (related)" RELATED []
synonym: "groat proportion (related)" RELATED []
synonym: "GROATPCENT (related)" RELATED []
synonym: "hull percentage (related)" RELATED []
is_a: TO:0000162 ! grain quality trait

[Term]
id: TO:0000614
name: lemma shape
def: "A lemma morphology trait (TO:1000023) which is the shape of the lemma (PO:0009037)." [Gramene:pankaj_jaiswal, PATO:0000052, PO:0009037, TO:Laurel_Cooper, TO:moorel]
comment: Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
xref: TO_GIT:390
is_a: PATO:0000052 {is_inferred="true"} ! shape
is_a: TO:1000023 {is_inferred="true"} ! lemma morphology trait
relationship: inheres_in PO:0009037 {is_inferred="true"} ! lemma

[Term]
id: TO:0000615
name: abscisic acid sensitivity
def: "Response with respect to application of abscisic acid." [Gramene:pankaj_jaiswal]
synonym: "ABA response (related)" RELATED []
synonym: "ABASN (related)" RELATED []
synonym: "abscisic acid response (related)" RELATED []
is_a: TO:0000401 ! plant growth hormone response

[Term]
id: TO:0000616
name: leaf perimeter
def: "It is a measure of the total length covered by the leaf margin." [Gramene:pankaj_jaiswal]
synonym: "leaf circumference (related)" RELATED []
synonym: "LFCIRCUM (related)" RELATED []
is_a: TO:0000492 ! leaf shape

[Term]
id: TO:0000617
name: colored grain percentage
def: "A grain color (TO:0002617) trait which is the percentage of colored grains." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: The measurement is on de-hulled grains in comparison to a reference color.
synonym: "percentage of damaged yellow rice grains (narrow)" NARROW []
synonym: "percentage of green rice grains (narrow)" NARROW []
synonym: "percentage of red rice grains (narrow)" NARROW []
is_a: TO:0001109 ! grain color trait

[Term]
id: TO:0000618
name: crushed grain percentage
def: "A grain quality trait (TO:0000162) which is the percentage of crushed, dehulled grain with at least one fourth of the size still intact." [Gramene:pankaj_jaiswal]
synonym: "CRUSHDHULGRPCENT (related)" RELATED []
synonym: "crushed dehulled-grain percentage (related)" RELATED []
synonym: "CRUSHGRPCENT (related)" RELATED []
synonym: "percent broken (related)" RELATED []
is_a: TO:0000162 ! grain quality trait

[Term]
id: TO:0000619
name: vivipary
def: "A phenomenon associated to the seeds that germinate before becoming detached or harvested from the parent plant. Thus the germination occurs before the seed undergoes dormancy." [Gramene:pankaj_jaiswal]
synonym: "preharvest germination (related)" RELATED []
is_a: TO:0000653 ! seed growth and development trait

[Term]
id: TO:0000620
name: plant embryo development trait
def: "A whole plant growth and development trait (TO:0000947) that is a quality of a plant embryo development stage (PO:0007631)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
xref: TO_GIT:299
is_a: TO:0000947 ! whole plant growth and development trait

[Term]
id: TO:0000621
name: inflorescence development trait
def: "A shoot system growth and development trait (TO:0000654) which is the development of an inflorescence (PO:0009049) ." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
is_a: TO:0000654 ! shoot system growth and development trait

[Term]
id: TO:0000622
name: flower development trait
def: "Traits associated with observing effects on the development of the flower and its parts." [Gramene:pankaj_jaiswal]
synonym: "floret development trait (related)" RELATED []
is_a: TO:0000621 ! inflorescence development trait

[Term]
id: TO:0000623
name: involucre bristle length
def: "An inflorescence bristle length trait (TO:0000643) that is the length of the bristles found on an involucre (PO:0009100)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "bristle length (related)" RELATED []
synonym: "INVLCBS (related)" RELATED []
synonym: "sterile inflorescence branch length (related)" RELATED []
xref: TO_GIT:153
is_a: TO:0000643 ! inflorescence bristle length
is_a: TO:0000979 ! involucre morphology trait

[Term]
id: TO:0000624
name: allelopathic effect
def: "This is an assay of any direct or indirect, harmful or beneficial effect of one plant on another through the production of chemical compounds (allelochemicals) that escape in the environment." [Gramene:pankaj_jaiswal]
synonym: "ALLELPATHEF (related)" RELATED []
is_a: TO:0000347 ! weed damage response trait

[Term]
id: TO:0000625
name: spikelet density
def: "A spikelet morphology trait (TO:0000657) which is the density of a spikelet (PO:0009051) in the inflorescence (PO:0009049) or on the given inflorescence branch (PO:0009081) order." [Gramene:pankaj_jaiswal, PO:0009049, PO:0009051, PO:0009081, TO:moorel]
comment: Refer to density (PATO:0001019): A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size.
synonym: "SPKDN (related)" RELATED []
xref: PATO:0001019
is_a: TO:0000657 ! spikelet morphology trait

[Term]
id: TO:0000626
name: OBSOLETE relative phosphorus distribution between shoot and root
def: "OBSOLETE" [TO:Laurel_Cooper]
synonym: "RELPHOCONCSHRT (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000627
name: OBSOLETE relative phosphorus utilization efficiency
def: "OBSOLETE" []
synonym: "RELPHOUTZEFY (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000628
name: pearl millet downy mildew response
def: "Causal agent: Sclerospora graminicola (Sacc. ) Schroet." [Gramene:pankaj_jaiswal, NCBITaxon:162130, TO:Laurel_Cooper]
comment: It causes the downy mildew disease in Pearl millet.
synonym: "Pg_DNMDRS (related)" RELATED []
is_a: TO:0001144 ! Oomycete disease response

[Term]
id: TO:0000629
name: days to tassel
def: "It is determined as the number of days from the seed sowing to the stage when either the pollen shedding or anther exsertion occurs on the maize tassel." [Gramene:pankaj_jaiswal]
comment: Depends on the study type. For a study with multiple plants, on average 50% of the plants must have sheeding of pollen or anther exsertion.
synonym: "days to tassel flowering (exact)" EXACT []
is_a: TO:0000344 ! days to flowering trait
is_a: TO:0000365 ! male flowering

[Term]
id: TO:0000630
name: pedicel length
def: "Length of the pedicel." [Gramene:pankaj_jaiswal]
synonym: "PDCLG (related)" RELATED []
is_a: TO:0000784 ! inflorescence branch morphology trait

[Term]
id: TO:0000631
name: green plantlet frequency
def: "An in vitro regeneration ability (TO:0000243) trait which is the frequency of the development of green plantlets." [TO:Laurel_Cooper]
synonym: "GRNPTLDFQ (related)" RELATED []
is_a: TO:0000243 ! in vitro regeneration ability

[Term]
id: TO:0000632
name: OBSOLETE green plantlet yield frequency
def: "OBSOLETE" []
synonym: "GRNPTLYLDFQ (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000633
name: OBSOLETE relative total dry weight
def: "OBSOLETE" [TO:Laurel_Cooper]
synonym: "RELTDWT (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000634
name: stem node number
def: "A stem morphology trait (TO:0000361) which is the number of stem nodes (PO:0020141)." [Gramene:pankaj_jaiswal]
synonym: "NDNB (related)" RELATED []
is_a: TO:0000361 ! stem morphology trait

[Term]
id: TO:0000635
name: popping expansion volume
def: "A cooking quality trait (TO:0001069) which is the amount of expansion of a kernel with popping." [TO:Laurel_Cooper]
synonym: "popcorn volume (related)" RELATED []
synonym: "POPEXPVOL (related)" RELATED []
is_a: TO:0001069 ! cooking quality trait

[Term]
id: TO:0000636
name: OBSOLETE relative shoot dry weight
def: "OBSOLETE" [TO:Laurel_Cooper]
synonym: "RELSHDWT (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000638
name: spike width
def: "An inflorescence width (TO:0000804) trait which is the width of a spike inflorescence (PO:0030117)." [TO:Laurel_Cooper]
synonym: "SPIKEWD (related)" RELATED []
is_a: TO:0000804 ! inflorescence width

[Term]
id: TO:0000639
name: OBSOLETE seed fertility
def: "OBSOLETE" []
synonym: "percent seed fertility (related)" RELATED []
synonym: "SDFRT (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000640
name: OBSOLETE total root number
def: "OBSOLETE  Total sum of number of roots in a plant derived per experiment." [Gramene:pankaj_jaiswal]
synonym: "TRTNB (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000641
name: inflorescence primary branch length
def: "An inflorescence primary branch morphology trait (TO:0000846) which the length of a second order inflorescence axis (PO:0006321)." [Gramene:pankaj_jaiswal, PO:0006321, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
synonym: "PBRLG (related)" RELATED []
xref: PATO:0000122
is_a: TO:0000846 ! inflorescence primary branch morphology trait

[Term]
id: TO:0000642
name: leaf sheath diameter
def: "A leaf sheath morphology trait (TO:0000835) which is the measurement, in centimeters of the leaf sheath (PO:0020104) diameter." [Gramene:pankaj_jaiswal, PO:0020104, TO:moorel]
comment: Refer to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
synonym: "LFSDIA (related)" RELATED []
xref: PATO:0001334
is_a: TO:0000835 ! leaf sheath morphology trait

[Term]
id: TO:0000643
name: inflorescence bristle length
def: "An inflorescence morphology trait (TO:0000050) that is the length of the bristles found on an inflorescence (PO:0009049)." [Gramene:pankaj_jaiswal, PO:0009049, TO:moorel]
synonym: "BRLG (related)" RELATED []
xref: TO_GIT:153
is_a: TO:0000373 ! inflorescence morphology trait

[Term]
id: TO:0000644
name: relative root dry weight
def: "The relative (dry)weight of the root determined after a given treatment as compared to the one determined under normal conditions." [Gramene:pankaj_jaiswal]
synonym: "RELRTDWT (related)" RELATED []
is_a: TO:0000078 ! root dry weight

[Term]
id: TO:0000645
name: OBSOLETE relative phosphorus concentration
def: "OBSOLETE" []
synonym: "RELPHOCONC (related)" RELATED []
is_obsolete: true
created_by: jaiswalp

[Term]
id: TO:0000646
name: OBSOLETE cauline axillary branch number
def: "OBSOLETE" []
synonym: "CAUAXIBRNB (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000647
name: OBSOLETE relative acid phosphatase activity
def: "OBSOLETE" [TO:cooperl]
synonym: "RELACIDPASEACT (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000648
name: OBSOLETE relative phosphorus uptake
def: "OBSOLETE" []
synonym: "RELPHOUP (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000649
name: peduncle width
def: "A peduncle morphology trait (TO:0000776) which is the width of a peduncle (PO:0025386)." [Gramene:pankaj_jaiswal, PO:0025386, TO:Laurel_Cooper]
comment: Refers to the width ((PATO:0000921):A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite) of a peduncle (PO:0009053).
synonym: "PDCWD (related)" RELATED []
xref: PATO:0000921
xref: TO_GIT:88
is_a: TO:0000776 ! peduncle morphology trait

[Term]
id: TO:0000650
name: lemma length
def: "A lemma morphology trait (TO:1000023) which is the length of the lemma (PO:0009037)." [Gramene:pankaj_jaiswal, PATO:0000122, PO:0009037, TO:moorel]
comment: Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points.
synonym: "LEMLG (related)" RELATED []
xref: TO_GIT:390
is_a: TO:0000817 {is_inferred="true"} ! inflorescence bract length
is_a: TO:1000023 {is_inferred="true"} ! lemma morphology trait
relationship: inheres_in PO:0009037 {is_inferred="true"} ! lemma

[Term]
id: TO:0000651
name: flour color
def: "A processing quality trait (TO:0001068) which is the color of flour obtained by milling grains or other plant structures." [TO:Laurel_Cooper]
synonym: "FLRCL (related)" RELATED []
is_a: TO:0001068 ! processing quality trait

[Term]
id: TO:0000652
name: leaf necrosis
def: "A leaf morphology trait (TO:0000748) which is the leaf surface area affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic and/or necrotic tissue." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
synonym: "leaf scorch (related)" RELATED []
synonym: "LFNEC (related)" RELATED []
is_a: TO:0000748 ! leaf morphology trait

[Term]
id: TO:0000653
name: seed growth and development trait
def: "A multi-tissue plant structure development trait (TO:0000927) that has as primary participant a seed (PO:0009010)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
xref: TO_GIT:254
is_a: TO:0000926 ! multi-tissue plant structure growth and development trait

[Term]
id: TO:0000654
name: shoot system growth and development trait
def: "A plant structure growth and development trait (TO:0000928) that is a quality of the growth of the shoot system (PO:0009006), and shoot system development stages (PO:0025527)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
xref: TO_GIT:268
is_a: TO:0000928 ! plant structure growth and development trait

[Term]
id: TO:0000655
name: leaf growth and development trait
def: "A plant organ development trait (TO:0000927) that has as primary participant a leaf (PO:0025034)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
xref: TO_GIT:253
is_a: TO:0000927 ! plant organ growth and development trait
created_by: jaiswalp

[Term]
id: TO:0000656
name: root development trait
def: "Traits associated with observing effects on the development of the root and its parts." [Gramene:pankaj_jaiswal]
is_a: TO:0000927 ! plant organ growth and development trait

[Term]
id: TO:0000657
name: spikelet morphology trait
def: "An inflorescence morphology trait (TO:0000373) which is a quality of a spikelet (PO:0009051)." [Gramene:pankaj_jaiswal, PO:0009051, TO:Laurel_Cooper, TO:moorel]
xref: TO_GIT:144
is_a: TO:0000373 ! inflorescence morphology trait

[Term]
id: TO:0000658
name: days to silk
def: "It is determined as the number of days from the seed sowing to the first visible silk (stigma) on the maize ear." [Gramene:pankaj_jaiswal]
comment: Depends on the study type. For a study with multiple plants, on average 50% of the plants must have exposed silks.
is_a: TO:0000344 ! days to flowering trait
is_a: TO:0000359 ! female flowering

[Term]
id: TO:0000659
name: phyllochron
def: "A plant phenological trait (TO:0000933) which is the time interval between the appearance of successive leaves on the developing shoot axis." [Gramene:pankaj_jaiswal]
xref: TO:Laurel_Cooper
is_a: TO:0000933 ! plant phenological trait

[Term]
id: TO:0000660
name: axillary bud dormancy
def: "A shoot system growth and development trait (TO:0000654) where an axillary bud (PO:0004709) remains in a state of quiescence or dormancy (GO:0022611)." [TO:Laurel_Cooper]
is_a: TO:0000654 ! shoot system growth and development trait

[Term]
id: TO:0000661
name: tiller bud dormancy
def: "An axillary bud dormancy (TO:0000660) trait which affects the growth of a tiller (basal axillary shoot system (PO:0005001))." [TO:Laurel_Cooper]
is_a: TO:0000660 ! axillary bud dormancy
relationship: part_of TO:0000329 ! tiller formation trait

[Term]
id: TO:0000662
name: barley fusarium head blight response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Fusarium graminearum Schwabe." [Gramene:pankaj_jaiswal, NCBITaxon:5518, TO:Laurel_Cooper]
comment: barley fusarium head blight affects the quality and yield of barley (Hordeum vulgare L.) grain.
synonym: "Hv_FUSHEADBTRS (related)" RELATED []
is_a: TO:0001145 ! Ascomycete fungal disease response

[Term]
id: TO:0000663
name: wheat fusarium head blight response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Fusarium graminearum Schwabe (teleomorph: Gibberella zeae)." [Gramene:pankaj_jaiswal, NCBITaxon:5518, TO:Laurel_Cooper]
comment: In the USA and Canada, it causes severe yield and quality losses in wheat (Triticum aestivum L.).
synonym: "Ta_FUSHEADBTRS (related)" RELATED []
xref: TO_GIT:70
is_a: TO:0001145 ! Ascomycete fungal disease response

[Term]
id: TO:0000664
name: OBSOLETE fungal blight disease resistance
def: "OBSOLETE" [TO:Laurel_Cooper]
is_obsolete: true

[Term]
id: TO:0000665
name: grain core area white
def: "Measurement of the whitish area found in the dehulled grain." [Gramene:pankaj_jaiswal]
synonym: "GRCARWHT (related)" RELATED []
is_a: TO:0000587 ! endosperm quality

[Term]
id: TO:0000666
name: brown rice yield
def: "A grain yield trait (TO:0000396) which is the amount of dehulled whole grain." [TO:Laurel_Cooper]
synonym: "BRWRYLD (related)" RELATED []
is_a: TO:0000449 ! grain yield per plant

[Term]
id: TO:0000667
name: OBSOLETE cooking or brewing quality
def: "OBSOLETE: The quality trait of the seed or the products derived from it." [Gramene:pankaj_jaiswal]
xref: TO_GIT:108
is_obsolete: true
replaced_by: TO:0001069
replaced_by: TO:0001070

[Term]
id: TO:0000668
name: mycotoxin content
def: "Measuring amount of toxins found in the host plant after the infection by a fungal pathogen. The toxin is produced by the pathogen." [Gramene:pankaj_jaiswal]
is_a: TO:0000439 ! fungal disease response

[Term]
id: TO:0000669
name: deoxynivalenol content
def: "Measuring amount of mycotoxin deoxynivalenol found in the host plant after the infection by a fungus Fusarium sp." [Gramene:pankaj_jaiswal, PMID:12897863]
synonym: "DONCONC (related)" RELATED []
is_a: TO:0000668 ! mycotoxin content

[Term]
id: TO:0000670
name: floret number
def: "The number of flowers present on a inflorescence branch or in the inflorescence itself." [Gramene:pankaj_jaiswal]
synonym: "FLNB (related)" RELATED []
is_a: TO:0002736 ! flower number trait

[Term]
id: TO:0000671
name: flower abortion
def: "A plant reproductive trait (TO:0000392) in which a flower fails to complete develpment and dies." [TO:Laurel_Cooper]
synonym: "frequency of pre-flowering floret abortion (related)" RELATED []
synonym: "pre-flowering floret abortion (related)" NARROW []
synonym: "PREFLFLRABR (related)" RELATED []
is_a: TO:0000392 ! plant reproduction trait

[Term]
id: TO:0000672
name: bran percentage
def: "A grain quality trait (TO:0000162) which is the porportion of bran in a whole grain." [TO:Laurel_Cooper]
comment: Bran is the the nutritious, fiber-rich outer shell of a cereal grain, consisting of the pericarp (seed coat) and the aleurone layer.
synonym: "BRAPCENT (related)" RELATED []
synonym: "rice bran percentage (related)" RELATED []
is_a: TO:0000162 ! grain quality trait

[Term]
id: TO:0000673
name: tetraploid wheat fusarium head blight response
def: "Caused by Fusarium graminearum Schwabe (telomorph: Gibberella zeae), in the USA and Canada. It causes severe yield and quality losses in wheat (Triticum turgidum)." [Gramene:pankaj_jaiswal]
synonym: "tetraploid wheat fusarium head blight disease resistance (related)" RELATED []
synonym: "Tt_FUSHEADBTRS (related)" RELATED []
is_a: TO:0000663 ! wheat fusarium head blight response

[Term]
id: TO:0000674
name: OBSOLETE phytochemical compound content
def: "OBSOLETE They are non-nutritive plant chemicals that have protective or disease preventive properties." [Gramene:pankaj_jaiswal]
is_obsolete: true

[Term]
id: TO:0000675
name: ferulic acid content
def: "A metabolite content trait (TO:0000281) which is the amount of ferulic acid (CHEBI:17620) in a plant structure (PO:0009011)." [CHEBI:17620, Gramene:pankaj_jaiswal, TO:Laurel_Cooper, Wikipedia:ferulic_acid]
comment: Ferulic acid is an antioxidant which neutralizes free radicals (superoxide, nitric oxide and hydroxyl radical) which could cause oxidative damage of cell membranes and DNA. Ferulic acid helps to prevent damage to cells caused by ultraviolet light. It is found in the leaves and seeds of many plants, but especially in cereals such as brown rice, whole wheat and oats.
synonym: "4-hydroxy-3-methoxycinnamic acid (related)" RELATED []
synonym: "FERULICACIDCN (related)" RELATED []
is_a: TO:0020076 ! phenolic compound content
relationship: part_of TO:0001143 ! antioxidant activity trait

[Term]
id: TO:0000676
name: style color
def: "Style color is determined from blooming flowers or florets." [Gramene:pankaj_jaiswal]
synonym: "color of silk (related)" RELATED []
synonym: "color of style (related)" RELATED []
synonym: "silk color (related)" RELATED []
synonym: "STYCL (related)" RELATED []
is_a: TO:0006012 ! carpel morphology trait

[Term]
id: TO:0000677
name: third leaf position
def: "A leaf position (TO:0000541) which is the position of the third leaf (PO:0025034) on a plant." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Refers to: position (PATO_0000140): A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.
synonym: "3LFHT (related)" RELATED []
synonym: "3rd leaf height (related)" RELATED []
synonym: "third leaf height (related)" RELATED []
xref: TO_GIT:226
is_a: TO:0000541 ! leaf position

[Term]
id: TO:0000678
name: cob diameter
def: "An infructescence axis morphology trait (TO:0000921) which is the diameter of a cob." [TO:Laurel_Cooper]
comment: The cob is the first order infructescence axis PO:0025244 of the ear infructescence (new). Refers to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. In maize, this is measured in centimeters.
synonym: "cobd (related)" RELATED [MaizeGDB_QTL:82753]
synonym: "COBDIA (related)" RELATED []
synonym: "diameter of central spike of ear  (related)" RELATED []
xref: MaizeGDB_QTL:82753
xref: PATO:0001334
xref: TO_GIT:243
is_a: TO:0000921 ! infructescence axis morphology trait
relationship: part_of TO:0000433 ! ear diameter

[Term]
id: TO:0000680
name: inflorescence circumference
def: "An inflorescence morphology trait (TO:0000373) trait which is the circumference of an inflorescence (PO:0009049)." [TO:Laurel_Cooper]
synonym: "INFLOCIRCUM (related)" RELATED []
is_a: TO:0000373 ! inflorescence morphology trait
relationship: part_of TO:0006031 ! inflorescence size

[Term]
id: TO:0000681
name: ear circumference
def: "An ear infructescence morphology trait (TO:0000976) that is the circumference of an ear infructescence (PO:0025597)." [TO:Laurel_Cooper]
comment: Refers to circumference (PATO:0001648):  An 1-D extent quality which is equal to the length of the closed curve of a circle. Ear circumference (TO:0000681) is equal to ear diameter (TO:0000433) times 3.14.
synonym: "ear infructescence circumference (exact)" EXACT []
synonym: "EARCIRCUM (related)" RELATED []
xref: TO_GIT:132
is_a: TO:0000976 ! ear infructescence morphology trait

[Term]
id: TO:0000682
name: inflorescence height
def: "An inflorescence morphology trait (TO:0000373) which is the height of an inflorescence (PO:0009049) measured from ground to the attachment point." [Gramene:pankaj_jaiswal, PO:0009049, TO:moorel]
comment: Refer to height (PATO:0000119):  A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension.
synonym: "INFLOHT (related)" RELATED []
xref: PATO:0000119
xref: TO_GIT:226
is_a: TO:0000373 ! inflorescence morphology trait

[Term]
id: TO:0000683
name: ear infructescence position
def: "An ear infructescence morphology trait (TO:0000976) which is the position of an ear infructescence (PO:0025597)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper, TO:moorel]
comment: Refers to: position (PATO_0000140): A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.  In maize this is usually measured from the ground to the attachment point of the ear.
synonym: "ear height (related)" RELATED []
synonym: "EARHT (related)" RELATED []
xref: MaizeGDB_QTL:61369
xref: TO_GIT:226
is_a: TO:0000976 ! ear infructescence morphology trait

[Term]
id: TO:0000684
name: grassy flavor
def: "An assay to test for aroma and flavor reminiscent of freshly cut grass." [Gramene:pankaj_jaiswal]
synonym: "grassy flavour (related)" RELATED []
synonym: "GRASSYFLVOR (related)" RELATED []
is_a: TO:0002694 ! fruit flavor trait

[Term]
id: TO:0000685
name: fruit tenderness
def: "An assay for the soft and juicy texture." [Gramene:pankaj_jaiswal]
synonym: "FRTENDER (related)" RELATED []
synonym: "TENDER (related)" RELATED []
is_a: TO:0002728 ! fruit quality trait

[Term]
id: TO:0000686
name: fruit moisture content
def: "A moisture content trait (TO:0000228) which is the amount of moisture in a fruit (PO:0009001)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "JUICE (related)" RELATED []
synonym: "juiciness (related)" RELATED []
synonym: "succulence (related)" RELATED []
is_a: TO:0000228 ! moisture content trait
relationship: part_of TO:0002728 ! fruit quality trait

[Term]
id: TO:0000687
name: kernel row number per ear
def: "An infructescence morphology trait (TO:0000920) which is the number of rows of kernels per ear infructescence (PO:0025597)." [TO:Laurel_Cooper]
comment: In maize, kernel row number is counted on the central, widest part of the uppermost ear infructescence. In comparing to teosinte "rank",  kernel row number is divided by two.
synonym: "kernel row number per ear (related)" RELATED []
synonym: "KERROWNB (related)" RELATED []
xref: MaizeGDB_QTL:99383
xref: TO_GIT:286
is_a: TO:0000936 ! infructescence yield trait
is_a: TO:0000976 ! ear infructescence morphology trait

[Term]
id: TO:0000688
name: kernel row length
def: "A infructescence yield trait (TO:0000936) which is the length of a kernel row from base to where kernels end on the ear infructescence (PO:0025597)." [TO:Laurel_Cooper]
synonym: "kernel set length (related)" RELATED []
synonym: "KERROWLG (related)" RELATED []
xref: TO_GIT:288
is_a: TO:0000936 ! infructescence yield trait

[Term]
id: TO:0000689
name: grain tenderness
def: "A grain quality trait (TO:0000162) which is the degree of softness of the texture of a grain." [TO:Laurel_Cooper]
synonym: "GRTENDER (related)" RELATED []
synonym: "kernel tenderness (related)" RELATED []
is_a: TO:0000162 ! grain quality trait

[Term]
id: TO:0000690
name: maysin content
def: "A grain protein content trait (TO:0001136) which is the amount maysin in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal] {comment="TO:Laurel_Cooper"}
comment: Maysin is a coagulable globulin protein produced by the maize plant. It has insecticide properties.
synonym: "MAYSINCN (related)" RELATED []
is_a: TO:0001136 ! grain protein content

[Term]
id: TO:0000691
name: maize northern leaf blight disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) in Zea mays (NCBITaxon:4577) caused by Exserohilum turcicum (Setosphaeria turcica)." [Gramene:pankaj_jaiswal, NCBITaxon:93612, TO:Laurel_Cooper]
synonym: "NCLB response (exact)" EXACT []
synonym: "northern corn leaf blight response (exact)" EXACT []
is_a: TO:0001145 ! Ascomycete fungal disease response

[Term]
id: TO:0000692
name: NCLB incubation period trait
def: "A maize northern leaf blight disease response trait (TO:0000691) which is the incubation period of the disease." [NCBITaxon:93612, TO:Laurel_Cooper]
synonym: "NLFBTINCUBPD (related)" RELATED []
is_a: TO:0000691 ! maize northern leaf blight disease response

[Term]
id: TO:0000693
name: NCLB area under disease progress curve
def: "A maize northern leaf blight disease response trait (TO:0000691) which is the area under the disease progress curve." [NCBITaxon:93612, TO:Laurel_Cooper]
synonym: "AUDPC (related)" RELATED []
synonym: "NLFBTPROGCURV (related)" RELATED []
is_a: TO:0000691 ! maize northern leaf blight disease response

[Term]
id: TO:0000694
name: fruit crispness
def: "An assay of firmness and freshness of the fruit." [Gramene:pankaj_jaiswal]
synonym: "CRISP (related)" RELATED []
is_a: TO:0002728 ! fruit quality trait

[Term]
id: TO:0000695
name: leaf margin color
def: "A leaf margin morphology trait (TO:0002635) which is the color of a leaf margin (PO:0020128)." [PO:0020128, TO:moorel]
comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
synonym: "leaf margin pigmentation (related)" RELATED []
synonym: "LFMCL (related)" RELATED []
synonym: "pigmentation of leaf margin (related)" RELATED []
xref: PATO:0000014
is_a: TO:0002635 ! leaf margin morphology trait

[Term]
id: TO:0000696
name: starch content
def: "Amount of starch present in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
synonym: "STARCHCN (related)" RELATED []
is_a: TO:0006007 ! polysaccharide content

[Term]
id: TO:0000697
name: starch yield
def: "A yield trait (TO:0000371) which is the yield of starch from a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Starch yield can be assayed initially with a smaller sample, but later converted to associate with a large sample, for example, for starch yield in kilograms per hectare.
synonym: "STARCHYLD (related)" RELATED []
is_a: TO:0000371 ! yield trait
relationship: part_of TO:0000162 ! grain quality trait

[Term]
id: TO:0000698
name: OBSOLETE starchiness
def: "OBSOLETE" []
synonym: "mealiness (related)" RELATED []
synonym: "STARCH (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0000699
name: sucrose synthase activity trait
def: "Catalysis of the reaction: UDP-glucose + D-fructose = UDP + sucrose." [GO:0016157]
synonym: "SUSACT (related)" RELATED []
is_a: TO:0000599 ! enzyme activity trait

[Term]
id: TO:0000700
name: fruit sweetness
def: "The quality of having the pleasant taste characteristic of sugar." [Gramene:pankaj_jaiswal]
synonym: "FRSWEET (related)" RELATED []
synonym: "SWEET (related)" RELATED []
is_a: TO:0002694 ! fruit flavor trait

[Term]
id: TO:0000701
name: turgor pressure
def: "The pressure within the cell resulting from the absorption of water into the vacuole and the imbibition of water by the protoplasm." [Gramene:pankaj_jaiswal]
synonym: "TURGPRES (related)" RELATED []
is_a: TO:0002683 ! plant cell morphology trait

[Term]
id: TO:0000702
name: starch concentration
def: "Concentration of starch present in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
synonym: "STARCHCONC (related)" RELATED []
is_a: TO:0006007 ! polysaccharide content

[Term]
id: TO:0000703
name: amylase activity trait
def: "An enzyme activity trait (TO:0000599) which is the quality of the hydrolysis of amylose or an amylose derivative by amylase." [Gramene:pankaj_jaiswal]
is_a: TO:0000599 ! enzyme activity trait

[Term]
id: TO:0000704
name: phosphatase activity trait
def: "Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate." [GO:0016791]
synonym: "phosphoric monoester hydrolase activity (related)" RELATED []
is_a: TO:0000599 ! enzyme activity trait

[Term]
id: TO:0000705
name: acid phosphatase activity trait
def: "Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate." [EC:3.1.3.2, GO:0003993]
synonym: "ACIDPASEACT (related)" RELATED []
is_a: TO:0000704 ! phosphatase activity trait

[Term]
id: TO:0000706
name: hull color
def: "A collective phyllome structure morphology trait (TO:0000845) that is the color of a caryopsis hull (PO:0006000)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: A caryopsis hull (PO:0006000) is the dry outer covering of a caryopsis fruit (PO:0030104; grain). The caryopsis hull is comprised of a dry lemma and palea, which enclose a spiklet  floret (PO:0009082).
synonym: "HULCL (related)" RELATED []
is_a: TO:0000845 ! collective phyllome structure morphology trait

[Term]
id: TO:0000707
name: pericarp color
def: "A pericarp morphology trait (TO:0000945) that is the color of the pericarp (PO:0009084)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Pericarp is the wall of a fruit, developed from the ovary or carpel wall. Also scored for grain color or color of the dehulled grain in grasses.
synonym: "bran color (related)" RELATED []
synonym: "dehulled grain color (related)" RELATED []
synonym: "DHULGRCL (related)" RELATED []
synonym: "grain color (related)" RELATED []
synonym: "PERICARPCL (related)" RELATED []
xref: PATO:0000014
xref: TO_GIT:292
is_a: TO:0000945 ! pericarp morphology trait
relationship: part_of TO:0002617 ! fruit color
relationship: part_of TO:0002728 ! fruit quality trait

[Term]
id: TO:0000708
name: plant color
def: "A whole plant morphology trait (TO:0000398) which is the color of a whole plant (PO:0000003)." [Gramene:pankaj_jaiswal, PO:0000003, TO:Laurel_Cooper]
xref: PATO:0000014
xref: TO_GIT:367
xref: TO_GIT:85
is_a: TO:0000398 ! whole plant morphology trait

[Term]
id: TO:0000709
name: leaf gloss
def: "A leaf morphology trait (TO:0000748) which is the appearance of glossiness of the leaf surface. Contributed by change in either the amount or content of cuticle wax (PO:0025386) on a leaf (PO:0025034)." [Gramene:pankaj_jaiswal]
comment: If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
is_a: TO:0000748 ! leaf morphology trait

[Term]
id: TO:0000710
name: globulin protein content
def: "A seed protein content (TO:0000490) trait which is the amount of globulin proteins in a seed." [Gramene:pankaj_jaiswal, TO:cooperl]
comment: Globulin proteins area class of globular proteins, and are one of the main protein classes. They have a higher molecular weight than albumins, and are insoluble in pure water but dissolve in dilute salt solutions. {xref="Wikipedia:Globulin"}
is_a: TO:0000490 ! seed protein content

[Term]
id: TO:0000711
name: imidazolinone sensitivity
def: "An assay to determine the tolerance exhibited by a plant or a group of plants (population) towards the applied herbicide imidazolinone." [Gramene:pankaj_jaiswal]
comment: It is expected that the herbicide application must not affect the agronomic yield, if any.
xref: PECO:0007633
is_a: TO:0000058 ! herbicide sensitivity

[Term]
id: TO:0000712
name: sulfonylurea herbicide sensitivity
def: "An assay to determine the tolerance exhibited by a plant or a group of plants (population) towards the applied herbicide sulfonylurea." [Gramene:pankaj_jaiswal]
comment: It is expected that the herbicide application must not affect the agronomic yield, if any.
is_a: TO:0000058 ! herbicide sensitivity

[Term]
id: TO:0000713
name: brittle endosperm
def: "An endosperm morphology trait (TO:0000575) which is a brittle endosperm (PO:0009089)." [PO:0009089, TO:moorel]
xref: TO_GIT:133
is_a: TO:0000575 ! endosperm morphology trait
is_a: TO:0000587 ! endosperm quality

[Term]
id: TO:0000714
name: seminal rootless
def: "Absence of seminal roots in the plant." [Gramene:pankaj_jaiswal]
synonym: "absence of seminal roots (related)" RELATED []
is_a: TO:0000198 ! rootless

[Term]
id: TO:0000715
name: fascicled ear
def: "In maize ears, the floral meristems undergo repeated dichotomous branching, resulting in fascicled (highly branched and bundled or clustered) ears." [Gramene:pankaj_jaiswal]
is_a: TO:0000267 ! inflorescence type

[Term]
id: TO:0000716
name: etched endosperm
def: "An endosperm morphology trait (TO:0000575) which is an etched endosperm (PO:0009089)." [PO:0009089, TO:moorel]
comment: This is also an endosperm quality trait (TO:0000587).
xref: TO_GIT:133
is_a: TO:0000575 ! endosperm morphology trait
is_a: TO:0000587 ! endosperm quality

[Term]
id: TO:0000717
name: rough endosperm
def: "An endosperm morphology trait (TO:0000575) which is a rough endosperm (PO:0009089)." [PO:0009089, TO:moorel]
comment: This is also an endosperm quality trait (TO:0000587). Refers to rough PATO:0000700 A texture quality inhering in a bearer by virtue of the bearer's irregular surface.
xref: PATO:0000700
xref: TO_GIT:133
is_a: TO:0000575 ! endosperm morphology trait
is_a: TO:0000587 ! endosperm quality

[Term]
id: TO:0000718
name: wrinkled grain
def: "A grain quality trait (TO:0000162) where the grain (caryopsis fruit; PO:0030104) has a wrinkled appearance, usually from a lack of starch accumulation." [TO:Laurel_Cooper]
synonym: "wrinkled kernel (narrow)" NARROW []
synonym: "wrinkled seed (related)" RELATED []
is_a: TO:0000162 ! grain quality trait

[Term]
id: TO:0000719
name: leaf vein color
def: "A leaf vein morphology trait (TO:0000820) which is the color of a leaf lamina vein (PO:0020138)." [PO:0020138, TO:moorel]
comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
xref: PATO:0000014
is_a: TO:0000820 ! leaf vein morphology trait

[Term]
id: TO:0000720
name: leaf midrib color
def: "A leaf midvein morphology trait (TO:0000822) which is the color of the leaf midvein (PO:0020139)." [TO:Laurel_Cooper]
synonym: "leaf midvein color (exact)" EXACT []
is_a: TO:0000822 ! leaf midvein morphology trait

[Term]
id: TO:0000721
name: leaf adherence
def: "A leaf morphology trait (TO:0000748) which is a tightly rolled leaf encasing the next emerging leaf (PO:0025034)." [Gramene:pankaj_jaiswal, PO:0025034, TO:Laurel_Cooper]
comment: If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
is_a: TO:0000748 ! leaf morphology trait

[Term]
id: TO:0000722
name: sporocyte development trait
def: "Traits associated with observing effects on the sporocyte development." [Gramene:pankaj_jaiswal]
is_a: TO:0002686 ! cell growth and development trait

[Term]
id: TO:0000723
name: microsporocyte development trait
def: "Traits associated with observing effects on the microsporocyte development." [Gramene:pankaj_jaiswal]
is_a: TO:0000722 ! sporocyte development trait

[Term]
id: TO:0000724
name: megasporocyte development trait
def: "Traits associated with observing effects on the megasporocyte development." [Gramene:pankaj_jaiswal]
is_a: TO:0000722 ! sporocyte development trait

[Term]
id: TO:0000725
name: megasporocyte number
def: "A count of the number of megasporocyte that is done to determine any increase or decrease in number." [Gramene:pankaj_jaiswal]
is_a: TO:0000724 ! megasporocyte development trait

[Term]
id: TO:0000726
name: microsporocyte number
def: "A count of the number of microsporocyte that is done to determine any increase or decrease in number." [Gramene:pankaj_jaiswal]
is_a: TO:0000723 ! microsporocyte development trait

[Term]
id: TO:0000727
name: sporogenesis
def: "The formation of spores." [Gramene:pankaj_jaiswal]
is_a: TO:0000283 ! biological process trait

[Term]
id: TO:0000728
name: cell cycle trait
def: "The traits associated with various developmental landmarks and processes of cell division during either the meiotic cell cycle or mitotic cell cycle." [R:pj]
synonym: "cell division cycle (related)" RELATED []
xref: GO:0007049
is_a: TO:0002686 ! cell growth and development trait

[Term]
id: TO:0000729
name: meiotic cell cycle trait
def: "The traits associated with various developmental landmarks and processes of cell division during either the meiotic cell cycle." [Gramene:pankaj_jaiswal]
comment: Meiosis is a type of cell division in which haploid gametes and spores are formed. The process involves a single duplication of the genetic material followed by two mitotic divisions. As a result each daughter cell receives half the chromosomal content (haploid) as the parent cell.
xref: GO:0051321
is_a: TO:0000728 ! cell cycle trait

[Term]
id: TO:0000730
name: mitotic cell cycle trait
def: "The traits associated with various developmental landmarks and processes of cell division during the mitotic cell cycle." [Gramene:pankaj_jaiswal]
comment: Mitosis is a type of cell division in which a cell duplicates its genetic information (DNA), in order to generate two, identical, daughter cells. Each daughter cell receives the same chromosome number / genetic content as the parent cell.
xref: GO:0000278
is_a: TO:0000728 ! cell cycle trait

[Term]
id: TO:0000731
name: lignin content
def: "A metabolite content trait (TO:0000281) which is the amount of lignin in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
comment: Lignin is a class of complex organic polymers that form key structural materials in the support tissues of most plants. Lignin is a collection of highly heterogeneous polymers derived from a handful of precursor lignols. Heterogeneity arises from the diversity and degree of crosslinking between these lignols.
is_a: TO:0000281 ! metabolite content trait

[Term]
id: TO:0000732
name: OBSOLETE lignin monomer content
def: "OBSOLETE" [TO:Laurel_Cooper]
is_obsolete: true

[Term]
id: TO:0000733
name: lignin biosynthesis trait
def: "Traits associated with the biosynthesis of lignin in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
synonym: "lignin biosynthesis (related)" RELATED []
xref: GO:0009809
is_a: TO:0000283 ! biological process trait

[Term]
id: TO:0000734
name: grain length
alt_id: TO:0002760
def: "A caryopsis fruit morphology trait (TO:0001079) which is the length of a grain (caryopsis fruit; PO:0030104)." [Gramene:pankaj_jaiswal, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
synonym: "DHULGRLG (related)" RELATED []
synonym: "GRLG (exact)" EXACT []
synonym: "KERLG (related)" RELATED []
synonym: "kernel length (related)" RELATED []
synonym: "length of dehulled grain (related)" RELATED []
synonym: "length of grain without hull (related)" RELATED []
xref: PATO:0000122
is_a: TO:0001079 ! caryopsis fruit morphology trait

[Term]
id: TO:0000735
name: plastochron
def: "A plant phenological trait (TO:0000933) which is the time between the initiation of two leaves on the shoot apical meristem (PO:0020148)." [Gramene:pankaj_jaiswal]
xref: TO:Laurel_Cooper
is_a: TO:0000933 ! plant phenological trait

[Term]
id: TO:0000736
name: plant organ morphology trait
def: "A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a plant organ (PO:0009008)." [PO:0009008, TO:Laurel_Cooper]
xref: TO_GIT:55
is_a: TO:0000836 ! multi-tissue plant structure morphology trait
created_by: moorel
creation_date: 2012-04-19T10:36:57Z

[Term]
id: TO:0000737
name: plant aspect
def: "A whole plant morphology trait (TO:0000398) that is a qualitative score of the visual appeal (ideotype) of the whole plant (PO:0000003)." [TO:curators]
comment: Includes visual scoring of plant characteristics such as plant height (TO:0000207), uniformity of plants, plant damage by diseases and insects and lodging incidence (TO:0000068).
subset: Zea_mays
xref: TO_GIT:53
is_a: TO:0000398 ! whole plant morphology trait
created_by: moorel
creation_date: 2012-04-16T02:18:03Z

[Term]
id: TO:0000738
name: plant axis morphology trait
def: "A plant organ morphology trait (TO:0000736) which is a quality of a plant axis (PO:0025004)." [PO:0025004, TO:Laurel_Cooper]
xref: TO_GIT:55
is_a: TO:0000736 ! plant organ morphology trait
created_by: moorel
creation_date: 2012-04-19T10:38:30Z

[Term]
id: TO:0000739
name: shoot axis morphology trait
def: "A plant axis morphology trait (TO:0000738) which is a quality of a shoot axis (PO:0025029)." [PO:0025029, TO:Laurel_Cooper]
xref: TO_GIT:55
is_a: TO:0000738 ! plant axis morphology trait
created_by: moorel
creation_date: 2012-04-19T10:40:33Z

[Term]
id: TO:0000740
name: branch morphology trait
def: "A shoot axis morphology trait (TO:0000739) which is a quality of a branch (PO:0025073)." [PO:0025073, TO:Laurel_Cooper]
xref: TO_GIT:56
is_a: TO:0000739 ! shoot axis morphology trait
created_by: moorel
creation_date: 2012-04-19T10:42:49Z

[Term]
id: TO:0000741
name: tuber morphology trait
def: "A plant axis morphology trait (TO:0000738) which is quality of a tuber (PO:0004543)." [PO:0004543, TO:Laurel_Cooper]
xref: TO_GIT:56
is_a: TO:0000738 ! plant axis morphology trait
created_by: moorel
creation_date: 2012-04-19T10:45:11Z

[Term]
id: TO:0000742
name: subterranean shoot axis tuber morphology trait
def: "A tuber morphology trait (TO:0000741) which is a quality of a subterranean shoot axis tuber (PO:0004547)." [PO:0004547, TO:Laurel_Cooper]
comment: A subterranean shoot axis tuber (PO:0004547) is found in plants such as yam (Dioscorea sp.) and potato (Solanum tuberosum).
subset: Solanaceae_spp
xref: TO_GIT:56
is_a: TO:0000741 ! tuber morphology trait
created_by: moorel
creation_date: 2012-04-19T10:46:10Z

[Term]
id: TO:0000743
name: subterranean shoot axis tuber shape
def: "A subterranean shoot axis tuber morphology trait (TO:0000742) which is the shape of a subterranean  shoot axis tuber (PO:0004547)." [PO:0004547, TO:Laurel_Cooper]
comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
subset: Solanaceae_spp
synonym: "tuber shape (broad)" BROAD []
xref: PATO:0000052
xref: TO_GIT:56
is_a: TO:0000742 ! subterranean shoot axis tuber morphology trait
created_by: moorel
creation_date: 2012-04-19T10:48:44Z

[Term]
id: TO:0000744
name: subterranean shoot axis tuber size
def: "A subterranean  shoot axis tuber morphology trait (TO:0000742) which is the size of a subterranean  shoot axis tuber (PO:0004547)." [PO:0004547, TO:Laurel_Cooper]
comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
subset: Solanaceae_spp
synonym: "tuber size (broad)" BROAD []
xref: PATO:0000117
xref: TO_GIT:56
is_a: TO:0000742 ! subterranean shoot axis tuber morphology trait
created_by: moorel
creation_date: 2012-04-19T10:51:20Z

[Term]
id: TO:0000745
name: OBSOLETE subterranean shoot axis tuber appearance
def: "OBSOLETE A subterranean shoot axis tuber morphology trait (TO:0000742) which is the appearance of a subterranean shoot axis tuber (PO:0004547)." [PO:0004547, TO:Laurel_Cooper]
comment: A 1-9 scale is used to score the overall appearance of the tuber, with 1 the lowest score (very poor) and 9 the highest (excellent).
subset: Solanaceae_spp
synonym: "tuber appearance (broad)" BROAD []
xref: TO_GIT:56
is_obsolete: true
created_by: moorel
creation_date: 2012-04-19T10:54:11Z

[Term]
id: TO:0000746
name: subterranean shoot axis tuber mass
def: "A subterranean shoot axis tuber morphology trait (TO:0000742) which is the mass of a subterranean shoot axis tuber (PO:0004547)." [PO:0004547, TO:Laurel_Cooper]
comment: Refer to mass (PATO:0000125): A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.
subset: Solanaceae_spp
synonym: "tuber mass (broad)" BROAD []
synonym: "tuber weight (exact)" EXACT []
xref: PATO:0000125
xref: TO_GIT:56
is_a: TO:0000742 ! subterranean shoot axis tuber morphology trait
created_by: moorel
creation_date: 2012-04-19T10:56:34Z

[Term]
id: TO:0000747
name: phyllome morphology trait
def: "A plant organ morphology trait (TO:0000736) which is quality of a phyllome (PO:0006001)." [PO:0006001, TO:Laurel_Cooper]
xref: TO_GIT:60
is_a: TO:0000736 ! plant organ morphology trait
created_by: moorel
creation_date: 2012-04-25T01:09:12Z

[Term]
id: TO:0000748
name: leaf morphology trait
def: "A phyllome morphology trait (TO:0000747) which is quality of a leaf (PO:0025034)." [PO:0025034, TO:Laurel_Cooper]
subset: Zea_mays
xref: TO_GIT:60
is_a: TO:0000747 ! phyllome morphology trait
created_by: moorel
creation_date: 2012-04-25T01:16:59Z

[Term]
id: TO:0000749
name: cotyledon morphology trait
def: "A vascular leaf morphology trait (TO:0000419) which is a quality of a cotyledon (PO:0020030)." [PO:0020030, TO:Laurel_Cooper]
xref: TO_GIT:61
is_a: TO:0000419 ! vascular leaf morphology trait
created_by: moorel
creation_date: 2012-04-25T01:18:38Z

[Term]
id: TO:0000750
name: seedling cotyledon color
def: "A seedling cotyledon morphology trait (TO:0000774) which is the color of a seedling cotyledon (PO:0025471)." [PO:0025471, TO:Laurel_Cooper]
xref: PATO:0000014
xref: TO_GIT:61
is_a: TO:0000774 ! seedling cotyledon morphology trait
created_by: moorel
creation_date: 2012-04-25T01:38:00Z

[Term]
id: TO:0000751
name: seedling cotyledon number
def: "A seedling cotyledon morphology trait (TO:0000774) which is the number of seedling cotyledons (PO:0025471)." [PO:0025471, TO:Laurel_Cooper]
xref: PATO:0000070
xref: TO_GIT:61
is_a: TO:0000774 ! seedling cotyledon morphology trait
created_by: moorel
creation_date: 2012-04-25T01:43:38Z

[Term]
id: TO:0000752
name: seedling cotyledon size
def: "A seedling cotyledon morphology trait (TO:0000774) which is the size of a seedling cotyledon (PO:0025471)." [PO:0025471, TO:Laurel_Cooper]
xref: PATO:0000117
xref: TO_GIT:60
is_a: TO:0000774 ! seedling cotyledon morphology trait
created_by: moorel
creation_date: 2012-04-25T01:47:23Z

[Term]
id: TO:0000753
name: coleoptile morphology trait
def: "A plant organ morphology trait (TO:0000736) which is a quality of a coleoptile (PO:0020033)." [PO:0020033, TO:Laurel_Cooper]
xref: TO_GIT:62
is_a: TO:0000736 ! plant organ morphology trait
created_by: moorel
creation_date: 2012-04-26T12:12:50Z

[Term]
id: TO:0000754
name: cardinal organ part morphology trait
def: "A cardinal organ part of a multi-tissue plant structure morphology trait (TO:0000837) which is a quality of a cardinal organ part (PO:0025001)." [PO:0025001, TO:Laurel_Cooper, TO:moorel]
xref: TO_GIT:63
is_a: TO:0000837 ! cardinal part of a multi-tissue plant structure morphology trait
created_by: moorel
creation_date: 2012-04-26T13:09:13Z

[Term]
id: TO:0000755
name: shoot axis internode morphology trait
def: "A cardinal organ part morphology trait (TO:0000754) which is a quality of a shoot axis internode (PO:0005005)." [PO:0005005, TO:Laurel_Cooper]
xref: TO_GIT:64
is_a: TO:0000754 ! cardinal organ part morphology trait
created_by: moorel
creation_date: 2012-04-26T13:12:37Z

[Term]
id: TO:0000756
name: stem internode morphology trait
def: "A shoot axis internode morphology trait (TO:0000755) which is a quality of a stem internode (PO:0020142)." [PO:0020142, TO:Laurel_Cooper]
xref: TO_GIT:64
is_a: TO:0000755 ! shoot axis internode morphology trait
created_by: moorel
creation_date: 2012-04-26T13:17:31Z

[Term]
id: TO:0000757
name: hypocotyl morphology trait
def: "A stem internode morphology trait (TO:0000756) which is a quality of a hypocotyl (PO:0020100)." [PO:0020100, TO:Laurel_Cooper]
xref: TO_GIT:64
is_a: TO:0000756 ! stem internode morphology trait
created_by: moorel
creation_date: 2012-04-26T13:21:05Z

[Term]
id: TO:0000758
name: mesocotyl morphology trait
def: "A stem internode morphology trait (TO:0000756) which is a quality of a mesocotyl (PO:0020037)." [PO:0020037, TO:Laurel_Cooper]
xref: TO_GIT:64
is_a: TO:0000756 ! stem internode morphology trait
created_by: moorel
creation_date: 2012-04-26T13:30:24Z

[Term]
id: TO:0000759
name: seedling hypocotyl color
def: "A seedling hypocotyl morphology trait (TO:0000769) which is the color of a seedling hypocotyl (PO:0025291)." [PO:0025291, TO:Laurel_Cooper]
comment: The color of a seedling hypocotyl (PO:0025291) during the hypocotyl emergence stage (PO:0007043).
xref: PATO:0000014
xref: TO_GIT:64
is_a: TO:0000769 ! seedling hypocotyl morphology trait
created_by: moorel
creation_date: 2012-04-26T13:41:13Z

[Term]
id: TO:0000760
name: seedling hypocotyl green
def: "A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color green." [PATO:0000320, PO:0020100, TO:Laurel_Cooper]
comment: Refers to green (PATO:0000320): A color hue with medium-low wavelength of that portion of the visible spectrum lying between yellow and blue, evoked in the human observer by radiant energy with wavelengths of approximately 490 to 570 nanometers.
xref: PATO:0000014
xref: PATO:0000320
is_a: TO:0000759 ! seedling hypocotyl color
created_by: moorel
creation_date: 2012-04-30T13:15:20Z

[Term]
id: TO:0000761
name: seedling hypocotyl green with bronze band
def: "A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color green with a bronze band." [PATO:0000320, PO:0020100, TO:Laurel_Cooper]
comment: Refers to green ((PATO:0000320): A color hue with medium-low wavelength of that portion of the visible spectrum lying between yellow and blue, evoked in the human observer by radiant energy with wavelengths of approximately 490 to 570 nanometers) and bronze ((PATO:0002363): A medium brown color with a metallic sheen, resembles the actual alloy bronze).
xref: PATO:0000014
xref: PATO:0000320
xref: PATO:0002363
is_a: TO:0000759 ! seedling hypocotyl color
created_by: moorel
creation_date: 2012-04-30T13:16:51Z

[Term]
id: TO:0000762
name: seedling hypocotyl purple
def: "A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color purple." [PATO:0000951, PO:0020100, TO:Laurel_Cooper]
comment: Refers to purple (PATO:0000951): A color that falls about midway between red and blue in hue.
xref: PATO:0000014
xref: PATO:0000951
is_a: TO:0000759 ! seedling hypocotyl color
created_by: moorel
creation_date: 2012-04-30T13:18:41Z

[Term]
id: TO:0000763
name: seedling hypocotyl dark purple
def: "A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color dark purple." [PATO:0001259, PO:0020100, TO:Laurel_Cooper]
comment: Refers to dark purple (PATO:0001259): A color consisting of purple color and low brightness.
xref: PATO:0000014
xref: PATO:0001259
is_a: TO:0000759 ! seedling hypocotyl color
created_by: moorel
creation_date: 2012-04-30T13:20:07Z

[Term]
id: TO:0000764
name: stalk morphology trait
def: "A cardinal organ part morphology trait (TO:0000754) which is a quality of a stalk (PO:0025066)." [PO:0025066, TO:Laurel_Cooper]
is_a: TO:0000754 ! cardinal organ part morphology trait
created_by: moorel
creation_date: 2012-04-30T13:27:43Z

[Term]
id: TO:0000765
name: petiole morphology trait
def: "A stalk morphology trait (TO:0000764) which is a quality of a petiole (PO:0020038)." [PO:0020038, TO:Laurel_Cooper]
xref: TO_GIT:87
is_a: TO:0000764 ! stalk morphology trait
created_by: moorel
creation_date: 2012-04-30T13:29:38Z

[Term]
id: TO:0000766
name: petiole length
def: "A petiole morphology trait (TO:0000765) which is the length of a petiole (PO:0020038)." [PO:0020038, TO:Laurel_Cooper]
xref: PATO:0000122
xref: TO_GIT:87
is_a: TO:0000765 ! petiole morphology trait
created_by: moorel
creation_date: 2012-04-30T13:31:22Z

[Term]
id: TO:0000767
name: petiole shape
def: "A petiole morphology trait (TO:0000765) which is the shape of a petiole (PO:0020038)." [PO:0020038, TO:Laurel_Cooper]
xref: PATO:0000052
xref: TO_GIT:87
is_a: TO:0000765 ! petiole morphology trait
created_by: moorel
creation_date: 2012-04-30T13:33:50Z

[Term]
id: TO:0000768
name: petiole size
def: "A petiole morphology trait (TO:0000765) which is the size of a petiole (PO:0020038)." [PO:0020038, TO:Laurel_Cooper]
xref: PATO:0000117
xref: TO_GIT:87
is_a: TO:0000765 ! petiole morphology trait
created_by: moorel
creation_date: 2012-04-30T13:37:02Z

[Term]
id: TO:0000769
name: seedling hypocotyl morphology trait
def: "A hypocotyl morphology trait (TO:0000757) which a seedling hypocotyl (PO:0025291)." [PO:0025291, TO:Laurel_Cooper]
comment: Use this term to describe traits for a seedling hypocotyl (PO:002529); a hypocotyl (PO:0020100) that is part of a seedling (PO:0008037).
is_a: TO:0000757 ! hypocotyl morphology trait
created_by: moorel
creation_date: 2012-05-03T12:51:59Z

[Term]
id: TO:0000770
name: bacterial blight disease resistance
def: "A bacterial disease resistance (TO:0000315) that is involved in the response to bacterial blight disease." [TO:Laurel_Cooper]
xref: TO_GIT:66
is_a: TO:0000315 ! bacterial disease response
created_by: moorel
creation_date: 2012-05-04T13:30:57Z

[Term]
id: TO:0000771
name: embryo hypocotyl morphology trait
def: "A hypocotyl morphology trait (TO:0000757) which is a quality of an embryo hypocotyl (PO:0025290)." [PO:0025290, TO:Laurel_Cooper]
comment: Use this term to describe traits for embryo hypocotyl (A hypocotyl (PO:0020100) that is part of a plant embryo (PO:0009009)).
is_a: TO:0000757 ! hypocotyl morphology trait
created_by: moorel
creation_date: 2012-05-04T13:47:12Z

[Term]
id: TO:0000772
name: seedling mesocotyl morphology trait
def: "A mesocotyl morphology trait (TO:0000758) which is a quality of a seedling mesocotyl (PO:0025295)." [PO:0025295, TO:Laurel_Cooper]
comment: Use this term to descride traits for seedling mesocotyl (PO:0025295). A seedling mesocotyl is an elongation of an embryonic mesocotyl that is part of a seedling (PO:0008037).
is_a: TO:0000758 ! mesocotyl morphology trait
created_by: moorel
creation_date: 2012-05-04T13:52:34Z

[Term]
id: TO:0000773
name: embryo mesocotyl morphology trait
def: "A mesocotyl morphology trait (TO:0000758) which is a quality of an embryo mesocotyl (PO:0025294)." [PO:0025294, TO:Laurel_Cooper]
is_a: TO:0000758 ! mesocotyl morphology trait
created_by: moorel
creation_date: 2012-05-04T13:57:56Z

[Term]
id: TO:0000774
name: seedling cotyledon morphology trait
def: "A cotyledon morphology trait (TO:0000749) which is a quality of a seedling cotyledon (PO:0025471)." [PO:0025471, TO:Laurel_Cooper]
comment: Use this term to describe traits for a seedling cotyledon (PO:0025471): A cotyledon (PO:0020030) that is part of a seedling (PO:0008037).
xref: TO_GIT:61
is_a: TO:0000749 ! cotyledon morphology trait
created_by: moorel
creation_date: 2012-05-11T12:28:54Z

[Term]
id: TO:0000775
name: plant embryo cotyledon morphology trait
def: "A cotyledon morphology trait (TO:0000749) which is a quality of a plant embryo cotyledon (PO:0025470)." [PO:0025470, TO:Laurel_Cooper]
comment: Use this term to describe traits for an plant embryo cotyledon (PO:0025470): A cotyledon (PO:0020030) that is part of a plant embryo (PO:0009009).
is_a: TO:0000749 ! cotyledon morphology trait
created_by: moorel
creation_date: 2012-05-11T12:34:04Z

[Term]
id: TO:0000776
name: peduncle morphology trait
def: "A shoot axis morphology trait (TO:0000739) which is a quality of a peduncle (PO:0009053)." [PO:0009053, TO:Laurel_Cooper]
subset: Cucurbita
subset: Hordeum_vulgare
subset: Triticum_aestivum
xref: TO_GIT:88
is_a: TO:0000739 ! shoot axis morphology trait
created_by: moorel
creation_date: 2012-05-17T12:28:05Z

[Term]
id: TO:0000777
name: peduncle waxiness
def: "A peduncle morphology trait (TO:0000776) which is a quality of the presence of cuticular wax (PO:0025386)." [PO:0025386, TO:Laurel_Cooper]
subset: Triticum_aestivum
xref: TO_GIT:88
is_a: TO:0000776 ! peduncle morphology trait
created_by: moorel
creation_date: 2012-05-17T12:29:02Z

[Term]
id: TO:0000778
name: peduncle type
def: "A peduncle morphology trait (TO:0000776) which is the type of a peduncle (PO:0009053)." [PO:0009053, TO:Laurel_Cooper]
subset: Hordeum_vulgare
is_a: TO:0000776 ! peduncle morphology trait
created_by: moorel
creation_date: 2012-05-17T13:54:47Z

[Term]
id: TO:0000779
name: peduncle color
def: "A peduncle morphology trait (TO:0000776) which is the color of a peduncle (PO:0009053)." [PO:0009053, TO:Laurel_Cooper]
comment: Refers to the color ((PATO:0000014):A composite chromatic quality composed of hue, saturation and intensity parts) of a peduncle (PO:0009053).
subset: Cucurbita
xref: PATO:0000014
is_a: TO:0000776 ! peduncle morphology trait
created_by: moorel
creation_date: 2012-05-17T13:58:50Z

[Term]
id: TO:0000780
name: peduncle attachment
def: "A peduncle morphology trait (TO:0000776) which is the attachment quality of a peduncle (PO:0009053)." [PO:0009053, TO:Laurel_Cooper]
comment: Refers to the attachment quatlity ((PATO:0001435): A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity) of a peduncle (PO:0009053).
subset: Cucurbita
synonym: "pod attachment (related)" RELATED []
xref: PATO:0001435
is_a: TO:0000776 ! peduncle morphology trait
created_by: moorel
creation_date: 2012-05-17T14:01:07Z

[Term]
id: TO:0000781
name: seedling hypocotyl size
def: "A seedling hypocotyl morphology trait (TO:0000769) which is the size of a seedling hypocotyl (PO:0025291)." [PO:0025291, TO:Laurel_Cooper]
subset: Zea_mays
xref: PATO:0000117
is_a: TO:0000769 ! seedling hypocotyl morphology trait
created_by: moorel
creation_date: 2012-05-17T14:19:59Z

[Term]
id: TO:0000782
name: inflorescence axis morphology trait
def: "A shoot axis morphology trait (TO:0000739) which is a quality of an inflorescence axis (PO:0020122)." [PO:0020122, TO:Laurel_Cooper]
is_a: TO:0000739 ! shoot axis morphology trait
created_by: moorel
creation_date: 2012-05-17T14:39:45Z

[Term]
id: TO:0000783
name: inflorescence axis size
def: "An inflorescence axis morphology trait (TO:0000782) which is the size of an inflorescence axis (PO:0020122)." [PO:0020122, TO:Laurel_Cooper]
comment: Refers to the size ((PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude) of an inflorescence axis (PO:0020122).
subset: Hordeum_vulgare
xref: PATO:0000117
is_a: TO:0000782 ! inflorescence axis morphology trait
created_by: moorel
creation_date: 2012-05-17T14:42:14Z

[Term]
id: TO:0000784
name: inflorescence branch morphology trait
def: "A inflorescence axis morphology trait (TO:0000782) which is a quality of an inflorescence branch (PO:0009081)." [PO:0009081, TO:Laurel_Cooper]
is_a: TO:0000782 ! inflorescence axis morphology trait
created_by: moorel
creation_date: 2012-05-18T13:25:20Z

[Term]
id: TO:0000785
name: tassel branch morphology trait
def: "An inflorescence branch morphology trait (TO:0000784) which is a quality of a tassel branch (PO:0006323)." [PO:0006323, TO:Laurel_Cooper]
xref: TO_GIT:89
is_a: TO:0000784 ! inflorescence branch morphology trait
created_by: moorel
creation_date: 2012-05-18T13:29:07Z

[Term]
id: TO:0000786
name: reproductive shoot system morphology trait
def: "A shoot system morphology trait (TO:0000077) that is a quality of a reproductive shoot system (PO:0025082)." [PO:0025082, TO:Laurel_Cooper]
xref: TO_GIT:57
is_a: TO:0000077 ! shoot system morphology trait
created_by: moorel
creation_date: 2012-05-18T13:35:01Z

[Term]
id: TO:0000787
name: inflorescence waxiness
def: "An inflorescence morphology trait (TO:0000373) which is the waxiness of an inflorescence (PO:0009049)." [PO:0009049, TO:Laurel_Cooper]
subset: Hordeum_vulgare
is_a: TO:0000373 ! inflorescence morphology trait
created_by: moorel
creation_date: 2012-05-18T13:38:09Z

[Term]
id: TO:0000788
name: tassel inflorescence morphology trait
def: "An inflorescence morphology trait (TO:0000373) which is a quality of a tassel inflorescence (PO:0020126)." [PO:0020126, TO:Laurel_Cooper]
subset: Zea_mays
xref: TO_GIT:89
is_a: TO:0000373 ! inflorescence morphology trait
created_by: moorel
creation_date: 2012-05-18T13:45:59Z

[Term]
id: TO:0000789
name: bud morphology trait
def: "A shoot system morphology trait (TO:0000077) which is a quality of a bud (PO:0000055)." [PO:0000055, TO:Laurel_Cooper]
xref: TO_GIT:91
is_a: TO:0000077 ! shoot system morphology trait
created_by: moorel
creation_date: 2012-05-24T13:52:40Z

[Term]
id: TO:0000790
name: axillary bud morphology trait
def: "A bud morphology trait (TO:0000789) which is a quality of an axillary bud (PO:0004709)." [PO:0004709, TO:Laurel_Cooper]
subset: Saccharum
xref: TO_GIT:91
is_a: TO:0000789 ! bud morphology trait
created_by: moorel
creation_date: 2012-05-24T13:55:08Z

[Term]
id: TO:0000791
name: axillary bud size
def: "An axillary bud morphology trait (TO:0000790) which the size of an axillary bud (PO:0004709)." [PO:0004709, TO:Laurel_Cooper]
comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large.
subset: Saccharum
xref: PATO:0000117
xref: TO_GIT:91
is_a: TO:0000790 ! axillary bud morphology trait
created_by: moorel
creation_date: 2012-05-30T13:20:21Z

[Term]
id: TO:0000792
name: axillary bud number
def: "An axillary bud morphology trait (TO:0000790) which is the number of axillary buds (PO:0004709) on a stalk or stem." [PO:0004709, TO:Laurel_Cooper]
comment: Refer to number (PATO:0001056).
subset: Saccharum
xref: PATO:0001056
xref: TO_GIT:91
is_a: TO:0000790 ! axillary bud morphology trait
created_by: moorel
creation_date: 2012-05-30T13:23:10Z

[Term]
id: TO:0000793
name: axillary bud shape
def: "An axillary bud morphology trait (TO:0000790) which is the shape of an axillary bud (PO:0004709)." [PO:0004709, TO:Laurel_Cooper]
comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
subset: Saccharum
xref: PATO:0000052
xref: TO_GIT:91
is_a: TO:0000790 ! axillary bud morphology trait
created_by: moorel
creation_date: 2012-05-30T13:25:45Z

[Term]
id: TO:0000794
name: axillary bud prominence
def: "An axillary bud morphology trait (TO:0000790) which is the prominence of an axillary bud (PO:0004709)." [PO:0004709, TO:Laurel_Cooper]
comment: Refer to prominent (PATO:0014820): A protruding quality inhering in a bearer by virtue of the bearer's standing out or projecting beyond a surface or line. Promenence categorized by hidden, medium or exposed.
subset: Saccharum
xref: PATO:0014820
xref: TO_GIT:91
is_a: TO:0000790 ! axillary bud morphology trait
created_by: moorel
creation_date: 2012-05-30T13:29:13Z

[Term]
id: TO:0000795
name: tassel inflorescence color
def: "A tassel inflorescence morphology trait (TO:0000788) which is the color of a tassel inflorescence (PO:0020126)." [PO:0020126, TO:Laurel_Cooper]
comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
subset: Zea_mays
xref: PATO:0000014
xref: TO_GIT:89
is_a: TO:0000788 ! tassel inflorescence morphology trait
created_by: moorel
creation_date: 2012-05-30T13:56:54Z

[Term]
id: TO:0000796
name: tassel inflorescence circumference
def: "A tassel inflorescence morphology trait (TO:0000788) which is the circumference of a tassel inflorescence (PO:0020126)." [PO:0020126, TO:Laurel_Cooper]
comment: Refer to circumference PATO:0001684: An 1-D extent quality which is equal to the length of the closed curve of a circle.
subset: Zea_mays
xref: PATO:0001684
xref: TO_GIT:89
is_a: TO:0000788 ! tassel inflorescence morphology trait
created_by: moorel
creation_date: 2012-05-30T14:00:19Z

[Term]
id: TO:0000797
name: tassel inflorescence height
def: "A tassel inflorescence morphology trait (TO:0000788) which is the height of a tassel inflorescence (PO:0020126)." [PO:0020126, TO:Laurel_Cooper]
comment: Refer to height PATO:0000119: A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension.
subset: Zea_mays
xref: PATO:0000119
xref: TO_GIT:89
is_a: TO:0000788 ! tassel inflorescence morphology trait
created_by: moorel
creation_date: 2012-05-30T14:04:13Z

[Term]
id: TO:0000798
name: tassel inflorescence length
def: "A tassel inflorescence morphology trait (TO:0000788) which is the length of a tassel inflorescence (PO:0020126)." [PMID:28373892, PO:0020126, TO:Laurel_Cooper]
comment: Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points.
subset: Zea_mays
xref: PATO:0000122
xref: TO_GIT:89
is_a: TO:0000788 ! tassel inflorescence morphology trait
created_by: moorel
creation_date: 2012-05-30T14:06:52Z

[Term]
id: TO:0000799
name: tassel inflorescence diameter
def: "A tassel inflorescence morphology trait (TO:0000788) which is the diameter of a tassel inflorescence (PO:0020126)." [PO:0020126, TO:Laurel_Cooper]
comment: Refer to diameter PATO:0001334: A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
subset: Zea_mays
xref: PATO:0001334
xref: TO_GIT:89
is_a: TO:0000788 ! tassel inflorescence morphology trait
created_by: moorel
creation_date: 2012-05-30T14:09:31Z

[Term]
id: TO:0000800
name: inflorescence density
def: "An inflorescence morphology trait (TO:0000373) which is the density of an inflorescence (PO:0009049)." [PO:0009049, TO:Laurel_Cooper]
comment: Refer to absolute density PATO:0001070.
synonym: "head density (narrow)" NARROW []
xref: PATO:0001070
xref: TO_GIT:92
xref: TO_GIT:97
is_a: TO:0000373 ! inflorescence morphology trait
created_by: moorel
creation_date: 2012-06-01T13:16:10Z

[Term]
id: TO:0000801
name: inflorescence depth
def: "An inflorescence morphology trait (TO:0000373) which is the depth of an inflorescence (PO:0009049)." [PO:0009049, TO:Laurel_Cooper]
comment: Refer to depth PATO:0001595: A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimenision.
synonym: "head depth (narrow)" NARROW []
xref: PATO:0001595
xref: TO_GIT:92
xref: TO_GIT:97
is_a: TO:0000373 ! inflorescence morphology trait
created_by: moorel
creation_date: 2012-06-01T13:18:51Z

[Term]
id: TO:0000802
name: inflorescence diameter
alt_id: TO:0000679
def: "An inflorescence morphology trait (TO:0000373) which is the diameter of an inflorescence (PO:0009049)." [PO:0009049, TO:Laurel_Cooper]
comment: Refer to diameter PATO:0001334:A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
synonym: "head diameter (narrow)" NARROW []
xref: PATO:0001334
xref: TO_GIT:92
xref: TO_GIT:97
is_a: TO:0000373 ! inflorescence morphology trait
relationship: part_of TO:0006031 ! inflorescence size
created_by: moorel
creation_date: 2012-06-01T13:20:49Z

[Term]
id: TO:0000803
name: inflorescence weight
def: "An inflorescence morphology trait (TO:0000373) which is the weight of an inflorescence (PO:0009049)." [PO:0009049, TO:Laurel_Cooper]
comment: Refer to weight PATO:0000128:A physical quality inhering in a bearer that has mass near a gravitational body.
synonym: "head weight (narrow)" NARROW []
xref: PATO:0000128
xref: TO_GIT:92
xref: TO_GIT:97
is_a: TO:0000373 ! inflorescence morphology trait
created_by: moorel
creation_date: 2012-06-01T13:23:12Z

[Term]
id: TO:0000804
name: inflorescence width
alt_id: TO:0000637
def: "An inflorescence morphology trait (TO:0000373) which is the width of an inflorescence (PO:0009049)." [PO:0009049, TO:Laurel_Cooper]
comment: Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
synonym: "head width (narrow)" NARROW []
synonym: "INFLWD (related)" RELATED []
xref: PATO:0000921
xref: TO_GIT:92
xref: TO_GIT:97
is_a: TO:0000373 ! inflorescence morphology trait
relationship: part_of TO:0006031 ! inflorescence size
created_by: moorel
creation_date: 2012-06-01T13:25:43Z

[Term]
id: TO:0000805
name: inflorescence texture
def: "An inflorescence morphology trait (TO:0000373) which with the texture of an inflorescence (PO:0009049)." [PO:0009049, TO:Laurel_Cooper]
comment: Refer to texture PATO:0000150: A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics.
synonym: "head texture (narrow)" NARROW []
xref: PATO:0000150
xref: TO_GIT:92
xref: TO_GIT:97
is_a: TO:0000373 ! inflorescence morphology trait
created_by: moorel
creation_date: 2012-06-01T13:28:08Z

[Term]
id: TO:0000806
name: inflorescence presence
def: "A reproductive shoot system morphology trait (TO:0000786) which is the presence of an inflorescence (PO:0009049)." [PO:0009049, TO:Laurel_Cooper]
comment: Refer to presence value PATO:0000458.
xref: PATO:0000458
xref: TO_GIT:97
is_a: TO:0000786 ! reproductive shoot system morphology trait
created_by: moorel
creation_date: 2012-06-01T13:30:09Z

[Term]
id: TO:0000807
name: pseudostem morphology trait
def: "A collective organ part structure morphology trait (TO:0000841) which is a quality of a pseudostem (PO:0025248)." [PO:0025248, TO:Laurel_Cooper]
subset: Allium_porrum
xref: TO_GIT:94
xref: TO_GIT:96
is_a: TO:0000841 ! collective organ part structure morphology trait
created_by: moorel
creation_date: 2012-06-01T13:35:28Z

[Term]
id: TO:0000808
name: pseudostem length
def: "A pseudostem morphology trait (TO:0000807) which is the length of a pseudostem (PO:0025248)." [PO:0025248, TO:Laurel_Cooper]
comment: Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points.
subset: Allium_porrum
xref: PATO:0000122
xref: TO_GIT:94
is_a: TO:0000807 ! pseudostem morphology trait
created_by: moorel
creation_date: 2012-06-01T13:38:37Z

[Term]
id: TO:0000809
name: pseudostem shape
def: "A pseudostem morphology trait (TO:0000807) which is the shape of a pseudostem (PO:0025248)." [PO:0025248, TO:Laurel_Cooper]
comment: Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
subset: Allium_porrum
xref: PATO:0000052
xref: TO_GIT:94
xref: TO_GIT:96
is_a: TO:0000807 ! pseudostem morphology trait
created_by: moorel
creation_date: 2012-06-01T13:40:25Z

[Term]
id: TO:0000810
name: pseudostem color
def: "A pseudostem morphology trait (TO:0000807) which is the color of a pseudostem (PO:0025248)." [PO:0025248, TO:Laurel_Cooper]
comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
subset: Allium_porrum
xref: PATO:0000014
xref: TO_GIT:94
xref: TO_GIT:96
is_a: TO:0000807 ! pseudostem morphology trait
created_by: moorel
creation_date: 2012-06-01T13:43:28Z

[Term]
id: TO:0000811
name: pseudostem diameter
def: "A pseudostem morphology trait (TO:0000807) which is the diameter of a pseudostem (PO:0025248)." [PO:0025248, TO:Laurel_Cooper]
comment: Refer to diameter PATO:0001334:A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
subset: Allium_porrum
xref: PATO:0001334
xref: TO_GIT:94
xref: TO_GIT:96
is_a: TO:0000807 ! pseudostem morphology trait
created_by: moorel
creation_date: 2012-06-01T13:45:05Z

[Term]
id: TO:0000812
name: tassel branch dry weight
def: "A tassel branch morphology trait (TO:0000785) which is the dry weight of a tassel branch (PO:0006323) prior to pollen shed." [PO:0006323, TO:Laurel_Cooper]
comment: Refer to dry PATO:0001824: A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid. \nRefer to weight PATO:0000128: A physical quality inhering in a bearer that has mass near a gravitational body.
xref: PATO:0000128
xref: PATO:0001824
xref: TO_GIT:89
is_a: TO:0000785 ! tassel branch morphology trait
created_by: moorel
creation_date: 2012-06-26T12:37:26Z

[Term]
id: TO:0000813
name: tassel branch number
def: "A tassel branch morphology trait (TO:0000785) which is the number of tassel branches (PO:0006323)." [PO:0006323, TO:Laurel_Cooper]
comment: Refer to number PATO:0001056.
xref: PATO:0001056
xref: TO_GIT:89
is_a: TO:0000785 ! tassel branch morphology trait
created_by: moorel
creation_date: 2012-06-26T12:40:53Z

[Term]
id: TO:0000814
name: tassel inflorescence type
def: "A tassel inflorescence morphology trait (TO:0000788) which is the type of tassel inflorescence (PO:0020126)." [PO:0020126, TO:Laurel_Cooper]
comment: Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
xref: PATO:0000052
xref: TO_GIT:89
is_a: TO:0000788 ! tassel inflorescence morphology trait
created_by: moorel
creation_date: 2012-06-26T12:47:20Z

[Term]
id: TO:0000815
name: bract morphology trait
def: "A phyllome morphology trait (TO:0000747) which is a quality of a bract (PO:0009055)." [PO:0009055, TO:Laurel_Cooper]
xref: TO_GIT:109
is_a: TO:0000747 ! phyllome morphology trait
created_by: moorel
creation_date: 2012-06-26T14:29:09Z

[Term]
id: TO:0000816
name: inflorescence bract morphology trait
def: "A bract morphology trait (TO:0000815) which is the quality of an inflorescence bract (PO:0009054)." [PO:0009054, TO:Laurel_Cooper]
synonym: "husk (exact)" EXACT []
xref: TO_GIT:110
is_a: TO:0000815 ! bract morphology trait
created_by: moorel
creation_date: 2012-06-26T14:31:08Z

[Term]
id: TO:0000817
name: inflorescence bract length
def: "An inflorescence bract morphology trait (TO:0000816) which is the length of an inflorescence bract (PO:0009054)." [PO:0009054, TO:Laurel_Cooper]
comment: Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points.
subset: Zea_mays
synonym: "husk length (exact)" EXACT []
xref: PATO:0000122
xref: TO_GIT:110
is_a: TO:0000816 ! inflorescence bract morphology trait
created_by: moorel
creation_date: 2012-06-26T14:34:28Z

[Term]
id: TO:0000818
name: inflorescence bract cover
def: "An inflorescence bract morphology trait (TO:0000816) which is the cover of an inflorescence bract (PO:0009054) measured as percentage of plants with ears that are not completely covered by the inflorescence bracts." [PO:0009054, TO:Laurel_Cooper]
subset: Zea_mays
synonym: "husk cover (exact)" EXACT []
xref: TO_GIT:110
is_a: TO:0000816 ! inflorescence bract morphology trait
created_by: moorel
creation_date: 2012-06-26T14:38:41Z

[Term]
id: TO:0000819
name: inflorescence bract color
def: "An inflorescence bract morphology trait (TO:0000819) which is  the color of an inflorescence bract (PO:0009054)." [PO:0009054, TO:Laurel_Cooper]
comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
subset: Zea_mays
synonym: "husk color (exact)" EXACT []
xref: PATO:0000014
xref: TO_GIT:110
is_a: TO:0000816 ! inflorescence bract morphology trait
created_by: moorel
creation_date: 2012-06-26T14:41:14Z

[Term]
id: TO:0000820
name: leaf vein morphology trait
def: "A vascular leaf morphology trait (TO:0000419) which is a quality of a leaf lamina vein (PO:0020138)." [PO:0020138, TO:Laurel_Cooper]
xref: TO_GIT:91
is_a: TO:0000419 ! vascular leaf morphology trait
created_by: moorel
creation_date: 2012-07-02T11:39:41Z

[Term]
id: TO:0000821
name: leaf vein size
def: "A leaf vein morphology trait (TO:0000820) which is the size of a leaf lamina vein (PO:0020138)." [PO:0020138, TO:Laurel_Cooper]
comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
xref: PATO:0000117
xref: TO_GIT:91
is_a: TO:0000820 ! leaf vein morphology trait
created_by: moorel
creation_date: 2012-07-02T11:45:41Z

[Term]
id: TO:0000822
name: leaf midvein morphology trait
def: "A leaf vein morphology trait (TO:0000820) which is a quality of a leaf midvein (PO:0020139)." [PO:0020139, TO:Laurel_Cooper]
synonym: "leaf midrib morphology trait (exact)" EXACT []
xref: TO_GIT:91
is_a: TO:0000820 ! leaf vein morphology trait
created_by: moorel
creation_date: 2012-07-02T11:51:56Z

[Term]
id: TO:0000823
name: leaf midvein thickness
def: "A leaf midvein morphology trait (TO:0000822) which is the thickness of a leaf midvein (PO:0020139)." [PO:0020139, TO:Laurel_Cooper]
comment: Refer to thickness (PATO:0000915): A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width.
synonym: "leaf midrib thickness (exact)" EXACT []
xref: PATO:0000915
xref: TO_GIT:91
is_a: TO:0000822 ! leaf midvein morphology trait
created_by: moorel
creation_date: 2012-07-02T11:56:25Z

[Term]
id: TO:0000824
name: leaf attitude
def: "A leaf morphology trait (TO:0000748) which is the attitude of a leaf (PO:0025034)." [PO:0025034, TO:Laurel_Cooper]
comment: Leaf attitude traits refer to the way a leaf is naturally held on the plant.  If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
xref: TO_GIT:91
is_a: TO:0000748 ! leaf morphology trait
created_by: moorel
creation_date: 2012-07-02T12:06:18Z

[Term]
id: TO:0000825
name: leaf flexibility
def: "A leaf morphology trait (TO:0000748) which is the flexibility of a leaf (PO:0025034)." [PO:0025034, TO:Laurel_Cooper]
comment: Refer to flexibility (PATO:0001543): A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
xref: PATO:0001543
xref: TO_GIT:91
is_a: TO:0000748 ! leaf morphology trait
created_by: moorel
creation_date: 2012-07-02T12:12:45Z

[Term]
id: TO:0000826
name: leaf volume
def: "A leaf morphology trait (TO:0000748) which is the volume of a leaf (PO:0025034)." [PO:0025034, TO:Laurel_Cooper]
comment: Refer to volume (PATO:0000918): A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
xref: PATO:0000918
xref: TO_GIT:91
is_a: TO:0000748 ! leaf morphology trait
created_by: moorel
creation_date: 2012-07-02T12:21:58Z

[Term]
id: TO:0000827
name: leaf lamina area
def: "A leaf lamina morphology trait (TO:0000829) which is the area of a leaf lamina (PO:0020039)." [PO:0020039, TO:Laurel_Cooper]
comment: Refer to area (PATO:0001323): A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent.
xref: PATO:0001323
xref: TO_GIT:91
is_a: TO:0000829 ! leaf lamina morphology trait
created_by: moorel
creation_date: 2012-07-02T12:30:01Z

[Term]
id: TO:0000828
name: leaf cover
def: "A leaf morphology trait (TO:0000748) which is a quality of the cover of a leaf (PO:0025034)." [PO:0025034, TO:Laurel_Cooper]
xref: TO_GIT:91
is_a: TO:0000748 ! leaf morphology trait
created_by: moorel
creation_date: 2012-07-02T12:36:51Z

[Term]
id: TO:0000829
name: leaf lamina morphology trait
def: "A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf lamina (PO:0020039)." [PO:0020039]
is_a: TO:0000754 ! cardinal organ part morphology trait
created_by: moorel
creation_date: 2012-07-02T13:36:23Z

[Term]
id: TO:0000830
name: leaf lamina margin morphology trait
def: "A leaf margin morphology trait (TO:0002635)which is a quality of a leaf lamina margin (PO:0025009)." [PO:0025009, TO:moorel]
xref: TO_GIT:142
is_a: TO:0002635 ! leaf margin morphology trait
created_by: moorel
creation_date: 2012-07-02T13:58:07Z

[Term]
id: TO:0000831
name: adult leaf morphology trait
def: "A vascular leaf morphology trait (TO:0000419) which is a quality of an adult vascular leaf (PO:0006340)." [PO:0006340, TO:moorel]
xref: TO_GIT:141
is_a: TO:0000419 ! vascular leaf morphology trait
created_by: moorel
creation_date: 2012-07-03T11:54:31Z

[Term]
id: TO:0000832
name: flag leaf morphology trait
def: "An adult vascular leaf morphology trait (TO:0000831) which is a quality of a flag leaf (PO:0020103)." [PO:0020103, TO:moorel]
xref: TO_GIT:141
is_a: TO:0000831 ! adult leaf morphology trait
created_by: moorel
creation_date: 2012-07-03T12:06:07Z

[Term]
id: TO:0000833
name: organ margin morphology trait
def: "A cardinal organ part morphology trait (TO:0000754) which is a quality of a organ margin (PO:0025005)." [PO:0025005, TO:moorel]
xref: TO_GIT:142
is_a: TO:0000754 ! cardinal organ part morphology trait
created_by: moorel
creation_date: 2012-07-03T12:54:18Z

[Term]
id: TO:0000834
name: phyllome margin morphology trait
def: "An organ margin morphology trait (TO:0000833) which is a quality of a phyllome margin (PO:0025018)." [PO:0025018, TO:moorel]
xref: TO_GIT:142
is_a: TO:0000833 ! organ margin morphology trait
created_by: moorel
creation_date: 2012-07-03T12:56:42Z

[Term]
id: TO:0000835
name: leaf sheath morphology trait
def: "A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf sheath (PO:0020104)." [PO:0020104, TO:moorel]
xref: TO_GIT:143
is_a: TO:0000754 ! cardinal organ part morphology trait
created_by: moorel
creation_date: 2012-07-03T13:07:07Z

[Term]
id: TO:0000836
name: multi-tissue plant structure morphology trait
def: "A plant structure morphology trait (TO:0000839) which is a quality of a multi-tissue plant structure (PO:0025496)." [PO:0025496, TO:moorel]
xref: TO_GIT:147
is_a: TO:0000839 ! plant structure morphology trait
created_by: moorel
creation_date: 2012-07-09T11:41:28Z

[Term]
id: TO:0000837
name: cardinal part of a multi-tissue plant structure morphology trait
def: "A plant structure morphology trait (TO:0000839) which is a quality of a cardinal organ part of a multi-tissue plant structure (PO:0025498)." [PO:0025498, TO:moorel]
xref: TO_GIT:147
is_a: TO:0000839 ! plant structure morphology trait
created_by: moorel
creation_date: 2012-07-09T13:36:14Z

[Term]
id: TO:0000838
name: seed coat morphology trait
def: "A portion of plant tissue morphology trait (TO:0000843) which is a quality of the seed coat (PO:0009088)." [PO:0009088, TO:moorel]
xref: TO_GIT:76
is_a: TO:0000843 ! portion of plant tissue morphology trait
created_by: moorel
creation_date: 2012-07-11T11:29:01Z

[Term]
id: TO:0000839
name: plant structure morphology trait
def: "A plant morphology trait (TO:0000017) which is a quality of a plant structure (PO:0009011)." [PO:0009011, TO:Laurel_Cooper, TO:moorel]
xref: TO_GIT:149
is_a: TO:0000017 ! plant morphology trait
created_by: moorel
creation_date: 2012-07-12T11:29:26Z

[Term]
id: TO:0000840
name: collective plant structure morphology trait
def: "A plant structure morphology trait (TO:0000839) which is a quality of a collective plant structure (PO:0025497)." [PO:0025497, TO:Laurel_Cooper, TO:moorel]
xref: TO_GIT:150
is_a: TO:0000839 ! plant structure morphology trait
created_by: moorel
creation_date: 2012-07-12T11:42:53Z

[Term]
id: TO:0000841
name: collective organ part structure morphology trait
def: "A collective plant structure morphology trait (TO:0000840) which is a quality of a collective organ part structure (PO:0025269)." [PO:0025269, TO:Laurel_Cooper, TO:moorel]
xref: TO_GIT:150
is_a: TO:0000840 ! collective plant structure morphology trait
created_by: moorel
creation_date: 2012-07-12T11:49:46Z

[Term]
id: TO:0000842
name: collective plant organ structure morphology trait
def: "A collective plant structure morphology trait (TO:0000840) which is a quality of a collective plant organ structure (PO:0025007)." [PO:0025007, TO:Laurel_Cooper, TO:moorel]
xref: TO_GIT:150
is_a: TO:0000840 ! collective plant structure morphology trait
created_by: moorel
creation_date: 2012-07-12T11:55:17Z

[Term]
id: TO:0000843
name: portion of plant tissue morphology trait
def: "A plant structure morphology trait (TO:0000839) which is a quality of a portion of plant tissue (PO:0009007)." [PO:0009007, TO:moorel]
xref: TO_GIT:151
is_a: TO:0000839 ! plant structure morphology trait
created_by: moorel
creation_date: 2012-07-12T12:18:33Z

[Term]
id: TO:0000844
name: in vitro plant structure morphology trait
def: "A plant structure morphology trait (TO:0000839) which is a quality of an in vitro plant structure (PO:0000004)." [PO:0000004, TO:moorel]
xref: TO_GIT:149
is_a: TO:0000839 ! plant structure morphology trait
created_by: moorel
creation_date: 2012-07-12T13:52:02Z

[Term]
id: TO:0000845
name: collective phyllome structure morphology trait
def: "A collective plant organ structure morphology trait (TO:0000842) which is a quality of a collective phyllome structure (PO:0025023)." [PO:0025023, TO:Laurel_Cooper, TO:moorel]
xref: TO_GIT:304
is_a: TO:0000842 ! collective plant organ structure morphology trait
created_by: moorel
creation_date: 2012-07-13T11:30:15Z

[Term]
id: TO:0000846
name: inflorescence primary branch morphology trait
def: "An inflorescence branch morphology trait (TO:0000784) which is a quality of a second order inflorescence axis (PO:0006321)." [PO:0006321, TO:moorel]
is_a: TO:0000784 ! inflorescence branch morphology trait
created_by: moorel
creation_date: 2012-07-13T13:09:22Z

[Term]
id: TO:0000847
name: panicle inflorescence morphology trait
def: "An inflorescence morphology trait (TO:0000373) which is a quality of a panicle inflorescence (PO:0030123)." [TO:Laurel_Cooper, TO:moorel]
synonym: "panicle related trait (related)" RELATED []
xref: TO_GIT:154
is_a: TO:0000373 ! inflorescence morphology trait
created_by: moorel
creation_date: 2012-07-13T13:43:22Z

[Term]
id: TO:0000848
name: fruit diameter
def: "A fruit size trait (TO:0002625) which is the diameter of a fruit (PO:0009001)." [PO:0009001, TO:moorel]
comment: Refer to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
xref: PATO:0001334
is_a: TO:0002625 ! fruit size
created_by: moorel
creation_date: 2012-07-16T12:31:27Z

[Term]
id: TO:0000849
name: fruit attachment
def: "A fruit morphology trait (TO:0002629) which is the attachment of a fruit (PO:0009001)." [PO:0009001, TO:moorel]
comment: Refer to attachment quality (PATO:0001435): A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity.
xref: PATO:0001435
is_a: TO:0002629 ! fruit morphology trait
created_by: moorel
creation_date: 2012-07-16T12:39:53Z

[Term]
id: TO:0000850
name: fruit type
def: "A fruit morphology trait (TO:0002629) which is the type of a fruit (PO:0009001)." [PO:0009001, TO:moorel]
is_a: TO:0002629 ! fruit morphology trait
created_by: moorel
creation_date: 2012-07-16T12:45:56Z

[Term]
id: TO:0000851
name: fruit hairiness
def: "A fruit morphology trait (TO:0002629) which is the presence or absence of hair on a fruit (PO:0009001)." [PO:0009001, TO:moorel]
comment: Refer to hairy (PATO:0000454): A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections.
xref: PATO:0000454
xref: TO_GIT:131
is_a: TO:0002629 ! fruit morphology trait
created_by: moorel
creation_date: 2012-07-16T12:48:45Z

[Term]
id: TO:0000852
name: fruit set trait
def: "A fruit growth and development trait (TO:0000929) which is the absence or presence of a fruit (PO:0009001)." [TO:moorel]
comment: In cassava fruit set is a visual rating with 0 = absent and 1 = present.
xref: TO_GIT:131
is_a: TO:0000929 ! fruit growth and development trait
created_by: moorel
creation_date: 2012-07-16T12:53:17Z

[Term]
id: TO:0000853
name: spikelet floret shape
def: "A spikelet floret morphology trait (TO:0000274) which is the shape of a spikelet floret (PO:0009082)." [PATO:0000052, PO:0009082, TO:Laurel_Cooper, TO:moorel]
comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
xref: TO_GIT:105
is_a: TO:0000274 ! spikelet floret morphology trait
created_by: moorel

[Term]
id: TO:0000854
name: spikelet floret size
def: "A spikelet floret morphology trait (TO:0000274) which is the size of a spikelet floret (PO:0009082)." [PATO:0000117, PO:0009082, TO:Laurel_Cooper, TO:moorel]
comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large.
xref: TO_GIT:105
is_a: TO:0000274 ! spikelet floret morphology trait
created_by: moorel
creation_date: 2012-07-16T13:08:42Z

[Term]
id: TO:0000855
name: spikelet floret diameter
def: "A spikelet floret morphology trait (TO:0000274) which is the diameter of a spikelet floret (PO:0009082)." [PATO:0001334, PO:0009082, TO:Laurel_Cooper, TO:moorel]
comment: Refer to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
xref: TO_GIT:105
is_a: TO:0000274 ! spikelet floret morphology trait
created_by: moorel
creation_date: 2012-07-16T13:11:57Z

[Term]
id: TO:0000856
name: lodicule length
def: "A lodiclue morphology trait (TO:0006009) which is the length of a lodicule (PO:0009036)." [PO:0009036, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
xref: PATO:0000122
xref: TO_GIT:105
is_a: TO:0006009 ! lodicule morphology trait
created_by: moorel
creation_date: 2012-07-16T13:47:12Z

[Term]
id: TO:0000857
name: lodicule type
def: "A lodicule morphology trait (TO:0006009) which is the type of lodicule (PO:0009036)." [PO:0009036, TO:moorel]
xref: TO_GIT:105
is_a: TO:0006009 ! lodicule morphology trait
created_by: moorel
creation_date: 2012-07-16T13:51:17Z

[Term]
id: TO:0000858
name: flower diameter
def: "A flower morphology trait (TO:0000499) which is the diameter of a flower (PO:0009046)." [PO:0009046, TO:moorel]
comment: Refer to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
xref: PATO:0001334
xref: TO_GIT:105
is_a: TO:0000499 ! flower morphology trait
created_by: moorel
creation_date: 2012-07-25T10:16:56Z

[Term]
id: TO:0000859
name: flower shape
def: "A flower morphology trait (TO:0000499) which is the shape of a flower (PO:0009046)." [PO:0009046, TO:moorel]
comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
xref: PATO:0000052
xref: TO_GIT:105
is_a: TO:0000499 ! flower morphology trait
created_by: moorel
creation_date: 2012-07-25T10:21:29Z

[Term]
id: TO:0000860
name: flower length
def: "A flower morphology trait (TO:0000499) which is the length of a flower (PO:0009046)." [PO:0009046, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
xref: PATO:0000122
xref: TO_GIT:105
is_a: TO:0000499 ! flower morphology trait
created_by: moorel
creation_date: 2012-07-25T10:27:25Z

[Term]
id: TO:0000861
name: flower abscission zone morphology trait
def: "A flower morphology trait (TO:0000499) which is a quality of the flower abscission zone (PO:0006502)." [PO:0006502, TO:moorel]
xref: TO_GIT:105
is_a: TO:0000499 ! flower morphology trait
created_by: moorel
creation_date: 2012-07-25T10:30:55Z

[Term]
id: TO:0000862
name: floral organ morphology trait
def: "A plant organ morphology trait (TO:0000736) which is a quality of a floral organ (PO:0025395)." [PO:0025395, TO:moorel]
xref: TO_GIT:160
is_a: TO:0000736 ! plant organ morphology trait
created_by: moorel
creation_date: 2012-07-25T10:47:57Z

[Term]
id: TO:0000863
name: petal morphology trait
def: "A phyllome morphology trait (TO:0000747) which is a quality of a petal (PO:0009032)." [PO:0009032, TO:moorel]
xref: TO_GIT:161
is_a: TO:0000747 ! phyllome morphology trait
created_by: moorel
creation_date: 2012-07-25T11:18:56Z

[Term]
id: TO:0000864
name: sepal morphology trait
def: "A phyllome morphology trait (TO:0000747) which is a quality of a sepal (PO:0009031)." [PO:0009031, TO:moorel]
xref: TO_GIT:161
is_a: TO:0000747 ! phyllome morphology trait
created_by: moorel
creation_date: 2012-07-25T11:22:26Z

[Term]
id: TO:0000865
name: tepal morphology trait
def: "A phyllome morphology trait (TO:0000747) which is a quality of a tepal (PO:0009033)." [PO:0009033, TO:moorel]
xref: TO_GIT:161
is_a: TO:0000747 ! phyllome morphology trait
created_by: moorel
creation_date: 2012-07-25T12:19:50Z

[Term]
id: TO:0000866
name: sporophyll morphology trait
def: "A phyllome morphology trait (TO:0000747) which is a quality of a sporophyll (PO:0009026)." [PO:0009026, TO:moorel]
xref: TO_GIT:162
is_a: TO:0000747 ! phyllome morphology trait
created_by: moorel
creation_date: 2012-07-25T13:04:01Z

[Term]
id: TO:0000867
name: megasporophyll morphology trait
def: "A sporophyll morphology trait (TO:0000866) which is a quality of a megasporophyll (PO:0009027)." [PO:0009027, TO:moorel]
xref: TO_GIT:162
is_a: TO:0000866 ! sporophyll morphology trait
created_by: moorel
creation_date: 2012-07-25T13:05:52Z

[Term]
id: TO:0000868
name: microsporophyll morphology trait
def: "A sporophyll morphology trait (TO:0000866) which is a quality of a microsporophyll (PO:0009028)." [PO:0009028, TO:moorel]
is_a: TO:0000866 ! sporophyll morphology trait
created_by: moorel
creation_date: 2012-07-25T13:07:55Z

[Term]
id: TO:0000869
name: glume morphology trait
def: "An inflorescence bract morphology trait (TO:0000816) which is a quality of a glume (PO:0009039)." [PO:0009039, TO:moorel]
xref: TO_GIT:166
is_a: TO:0000816 ! inflorescence bract morphology trait
relationship: part_of TO:0000657 ! spikelet morphology trait
created_by: moorel
creation_date: 2012-08-08T11:50:03Z

[Term]
id: TO:0000870
name: leaf yield trait
def: "A shoot system yield trait (TO:0000327) which is comprised of leaves (PO:0025034) or parts of leaves." [TO:Laurel_Cooper]
is_a: TO:0000327 ! shoot system yield trait
created_by: moorel
creation_date: 2012-10-04T15:42:58Z

[Term]
id: TO:0000871
name: fruit yield trait
def: "A shoot system yield trait (TO:0000327) which is the yield of fruits (PO:0009001)." [TO:Laurel_Cooper]
xref: TO_GIT:291
is_a: TO:0000327 ! shoot system yield trait
relationship: has_part TO:0000397 ! grain size
relationship: has_part TO:0002759 ! grain number trait
created_by: moorel
creation_date: 2012-10-04T15:45:03Z

[Term]
id: TO:0000872
name: leaf erect
def: "A leaf attitude (TO:0000824) which is a leaf held upright away from the substrate or host." [TO:moorel]
comment: Refer to erect (PATO:0000622): A positional quality inhering in a bearer by virtue of the bearer's being upright in position or posture.
xref: PATO:0000622
is_a: TO:0000824 ! leaf attitude
created_by: moorel
creation_date: 2012-10-09T13:55:46Z

[Term]
id: TO:0000873
name: leaf prostrate
def: "A leaf attitude (TO:0000824) which is a leaf hanging straight down." [TO:moorel]
comment: Refer to prostrate (PATO:0000631): A positional quality inhering in a bearer by virtue of the bearer's being stretched out and lying at full length along the ground.
xref: PATO:0000631
is_a: TO:0000824 ! leaf attitude
created_by: moorel
creation_date: 2012-10-09T14:01:24Z

[Term]
id: TO:0000874
name: leaf penduloum
def: "A leaf attitude (TO:0000824) which is a leaf laying flat against the substrate or host." [TO:moorel]
is_a: TO:0000824 ! leaf attitude
created_by: moorel
creation_date: 2012-10-09T14:04:08Z

[Term]
id: TO:0000875
name: leaf lamina splitting
def: "A leaf lamina morphology trait (TO:0000829) which is the splitting of a leaf lamina (PO:0020039)." [PO:0020039, TO:moorel]
comment: Refer to split (PATO:0001786): A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions.
xref: PATO:0001786
xref: TO_GIT:91
is_a: TO:0000829 ! leaf lamina morphology trait
created_by: moorel
creation_date: 2012-10-09T14:11:08Z

[Term]
id: TO:0000876
name: spine leaf morphology trait
def: "A vascular leaf morphology trait (TO:0000419) which is a quality of a spine leaf (PO:0025173)." [PO:0025173, TO:moorel]
xref: TO_GIT:158
is_a: TO:0000419 ! vascular leaf morphology trait
created_by: moorel
creation_date: 2012-10-09T14:46:53Z

[Term]
id: TO:0000877
name: spine leaf size
def: "A spine leaf morphology trait (TO:0000876) which is the size of the spine leaf (PO:0025173)." [PO:0025173, TO:moorel]
comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
xref: PATO:0000117
xref: TO_GIT:158
is_a: TO:0000876 ! spine leaf morphology trait
created_by: moorel
creation_date: 2012-10-09T14:48:19Z

[Term]
id: TO:0000878
name: spine leaf color
def: "A spine leaf morphology trait (TO:0000876) which is the color of the spine leaf (PO:0025173)." [PO:0025173, TO:moorel]
comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
xref: PATO:0000014
xref: TO_GIT:158
is_a: TO:0000876 ! spine leaf morphology trait
created_by: moorel
creation_date: 2012-10-09T14:52:10Z

[Term]
id: TO:0000879
name: stem hairiness
def: "A stem morphology trait (TO:0000361) which is the presence or absence of hair on the stem (PO:0009047)." [PO:0009047, TO:moorel]
comment: Refer to hairy (PATO:0000454): A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections.
xref: PATO:0000454
is_a: TO:0000361 ! stem morphology trait
created_by: moorel
creation_date: 2012-10-09T15:17:12Z

[Term]
id: TO:0000880
name: seed coat length
def: "A seed coat morphology trait (TO:0000838) which is the length of the seed coat (PO:0009088)." [PO:0009088, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
xref: PATO:0000122
xref: TO_GIT:76
is_a: TO:0000838 ! seed coat morphology trait
created_by: moorel
creation_date: 2012-10-09T15:27:02Z

[Term]
id: TO:0000881
name: flower type
def: "A flower morphology trait (TO:0000499) which is the type of a flower (PO:0009046)." [PO:0009046, TO:moorel]
xref: TO_GIT:175
is_a: TO:0000499 ! flower morphology trait
created_by: moorel
creation_date: 2012-10-11T11:30:45Z

[Term]
id: TO:0000882
name: cleistogamus flower
def: "A flower type trait (TO:0000881) which is a flower (PO:0009046) that does not open and favors self pollination." [PO:0009046, TO:moorel]
xref: TO_GIT:175
is_a: TO:0000881 ! flower type
created_by: moorel
creation_date: 2012-10-11T11:33:35Z

[Term]
id: TO:0000883
name: chasmogamous flower
def: "A flower type trait (TO:0000881) which is a flower (PO:0009046) that opens exposing anthers (PO:0009066) and/or pistil." [PO:0009046, PO:0009066, TO:moorel]
xref: TO_GIT:175
is_a: TO:0000881 ! flower type
created_by: moorel
creation_date: 2012-10-11T11:37:02Z

[Term]
id: TO:0000884
name: petiolule morphology trait
def: "A stalk morphology trait (TO:0000764) which is a quality of a petiolule (PO:0020050)." [PO:0020050, TO:moorel]
xref: TO_GIT:176
is_a: TO:0000764 ! stalk morphology trait
created_by: moorel
creation_date: 2012-10-11T11:53:06Z

[Term]
id: TO:0000885
name: petiolule color
def: "A petiolule morphology trait (TO:0000884) which is the color of the petiolule (PO:0020050)." [PO:0020050, TO:moorel]
comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
xref: PATO:0000014
xref: TO_GIT:176
is_a: TO:0000884 ! petiolule morphology trait
created_by: moorel
creation_date: 2012-10-11T11:55:06Z

[Term]
id: TO:0000886
name: petiolule shape
def: "A petiolule morphology trait (TO:0000884) which is the shape of the petiolule (PO:0020050)." [PO:0020050, TO:moorel]
comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
xref: PATO:0000052
xref: TO_GIT:176
is_a: TO:0000884 ! petiolule morphology trait
created_by: moorel
creation_date: 2012-10-11T12:02:02Z

[Term]
id: TO:0000887
name: petiolule length
def: "A petiolule morphology trait (TO:0000884) which is the length of the petiolule (PO:0020050)." [PO:0020050, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
xref: PATO:0000122
xref: TO_GIT:176
is_a: TO:0000884 ! petiolule morphology trait
created_by: moorel
creation_date: 2012-10-11T12:05:48Z

[Term]
id: TO:0000888
name: seed coat luster
def: "A seed coat morphology trait (TO:0000838) which is the luster of the seed coat (PO:0009088)." [PO:0009088, TO:moorel]
xref: TO_GIT:148
xref: TO_GIT:76
is_a: TO:0000838 ! seed coat morphology trait
created_by: moorel
creation_date: 2012-10-11T12:26:54Z

[Term]
id: TO:0000889
name: seed coat hardness
def: "A seed coat morphology trait (TO:0000838) which is the hardness of the seed coat (PO:0009088)." [PO:0009088, TO:moorel]
comment: Refer to hardness (PATO:0000048): A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking.
xref: PATO:0000048
xref: TO_GIT:148
xref: TO_GIT:76
is_a: TO:0000838 ! seed coat morphology trait
created_by: moorel
creation_date: 2012-10-11T12:29:15Z

[Term]
id: TO:0000890
name: seed coat proportion
def: "A seed coat morphology trait (TO:0000838) which is the relative proportion of seed coat (PO:0009088) to cotyledon (PO:0020030)." [PO:0009088, PO:0020030, TO:moorel]
comment: Refer to proportion (PATO:0001470): A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity.
xref: PATO:0001470
xref: TO_GIT:148
is_a: TO:0000838 ! seed coat morphology trait
created_by: moorel
creation_date: 2012-10-11T12:32:02Z

[Term]
id: TO:0000891
name: leaf wet weight
def: "A leaf weight trait (TO:0000505) which is the the measure of the wet weight of a leaf (PO:0025034)." [PO:0025034, TO:moorel]
is_a: TO:0000505 ! leaf weight
created_by: moorel
creation_date: 2012-10-11T12:50:20Z

[Term]
id: TO:0000892
name: stem size
def: "A stem morphology trait (TO:0000361) which is the size of a stem (PO:0009047)." [PO:0009047, TO:moorel]
comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
synonym: "core size (narrow)" NARROW []
synonym: "stalk size (related)" RELATED []
xref: PATO:0000117
xref: TO_GIT:157
is_a: TO:0000361 ! stem morphology trait
created_by: moorel
creation_date: 2012-11-20T15:35:42Z

[Term]
id: TO:0000893
name: stem shape
def: "A stem morphology trait (TO:0000361) which is the shape of a stem (PO:0009047)." [PO:0009047, TO:moorel]
comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
synonym: "core shape (narrow)" NARROW []
xref: PATO:0000052
xref: TO_GIT:80
is_a: TO:0000361 ! stem morphology trait
created_by: moorel
creation_date: 2012-11-20T15:44:05Z

[Term]
id: TO:0000894
name: fruit number trait
def: "An infructescence morphology trait (TO:0000920) which is the number of fruits (PO:0009001)." [PO:0009001, TO:moorel]
comment: Refer to has number of (PATO:0001555): The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
synonym: "accessory fruit number (narrow)" NARROW []
xref: PATO:0001555
xref: TO_GIT:178
is_a: TO:0000920 ! infructescence morphology trait
created_by: moorel
creation_date: 2013-01-24T14:03:35Z

[Term]
id: TO:0000895
name: fruit harvest index
def: "A harvest index (TO:0000128) which is the percent of usable fruit (PO:0009001)." [PO:0009001, TO:moorel]
xref: TO_GIT:179
is_a: TO:0000128 ! harvest index
created_by: moorel
creation_date: 2013-01-24T14:15:17Z

[Term]
id: TO:0000896
name: leaf harvest index
def: "A harvest index (TO:0000128) which is the percent of usable leaves (PO:0025034)." [PO:0025034, TO:moorel]
xref: TO_GIT:179
is_a: TO:0000128 ! harvest index
created_by: moorel
creation_date: 2013-01-24T14:19:38Z

[Term]
id: TO:0000897
name: seed harvest index
def: "A harvest index (TO:0000128) which is the percent of usable seeds (PO:0009010)." [PO:0009010, TO:moorel]
xref: TO_GIT:179
is_a: TO:0000128 ! harvest index
created_by: moorel
creation_date: 2013-01-24T14:21:24Z

[Term]
id: TO:0000898
name: root nodule morphology trait
def: "A cardinal organ part morphology trait (TO:0000754) which is a quality of a root nodule (PO:0003023)." [PO:0003023, TO:moorel]
xref: TO_GIT:181
is_a: TO:0000754 ! cardinal organ part morphology trait
created_by: moorel
creation_date: 2013-01-24T14:24:48Z

[Term]
id: TO:0000899
name: root nodule weight
def: "A root nodule morphology trait (TO:0000898) which is the weight of a root nodule (PO:0003023)." [PO:0003023, TO:moorel]
comment: Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body.
xref: PATO:0000128
xref: TO_GIT:181
is_a: TO:0000898 ! root nodule morphology trait
created_by: moorel
creation_date: 2013-01-24T14:26:46Z

[Term]
id: TO:0000900
name: root nodule number
def: "A root nodule morphology trait (TO:0000898) which is the number of root nodules (PO:0003023)." [PO:0003023, TO:moorel]
comment: Refer to has number of (PATO:0001555): The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
xref: PATO:0001555
xref: TO_GIT:181
is_a: TO:0000898 ! root nodule morphology trait
created_by: moorel
creation_date: 2013-01-24T14:30:27Z

[Term]
id: TO:0000901
name: dry fruit color
def: "A fruit color (TO:0002617) which is the color of a fruit (PO:0009001) that has been dried." [PO:0009001, TO:moorel]
comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. Refer to decreased water composition (PATO:0001801): A composition quality inhering in an bearer by virtue of the reduction in amount of water the bearer contains.
synonym: "dry pod color (narrow)" NARROW []
xref: PATO:0000014
xref: PATO:0001801
xref: TO_GIT:180
is_a: TO:0002617 ! fruit color
created_by: moorel
creation_date: 2013-01-24T14:37:51Z

[Term]
id: TO:0000902
name: seed coat pigment bleeding
def: "A seed coat morphology trait (TO:0000838) which is the bleeding of pigment in a seed coat (PO:0009088)." [PO:0009088, TO:moorel]
xref: TO_GIT:148
is_a: TO:0000838 ! seed coat morphology trait
created_by: moorel
creation_date: 2013-01-24T14:44:11Z

[Term]
id: TO:0000903
name: seed coat texture
def: "A seed coat morphology trait (TO:0000838) which is the texture of a seed coat (PO:0009088)." [PO:0009088, TO:moorel]
comment: Refer to texture (PATO:0000150): A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics.
xref: PATO:0000150
xref: TO_GIT:147
is_a: TO:0000838 ! seed coat morphology trait
created_by: moorel
creation_date: 2013-01-24T14:45:40Z

[Term]
id: TO:0000904
name: seed coat pattern
def: "A seed coat morphology trait (TO:0000838) which is the pattern of a seed coat (PO:0009088)." [PO:0009088, TO:moorel]
comment: Refer to color pattern (PATO:0000019): A chromatic property that is the relative position of different hues or degrees of saturation.
xref: PATO:0000019
xref: TO_GIT:148
is_a: TO:0000838 ! seed coat morphology trait
created_by: moorel
creation_date: 2013-01-24T14:48:21Z

[Term]
id: TO:0000905
name: seed yield trait
def: "A shoot system yield trait (TO:0000327) which is the yield of seeds (PO:0009010)." [PO:0009010, TO:Laurel_Cooper, TO:moorel]
xref: TO_GIT:182
is_a: TO:0000327 ! shoot system yield trait
relationship: has_part TO:0000181 ! seed weight
relationship: has_part TO:0000391 ! seed size
relationship: has_part TO:0000445 ! fruit seed number
created_by: moorel
creation_date: 2013-01-28T13:14:23Z

[Term]
id: TO:0000906
name: exocarp morphology trait
def: "A portion of plant tissue morphology trait (TO:0000843) which is a quality of the exocarp (PO:0009085)." [PO:cooperl]
synonym: "epicarp morphology trait (exact)" EXACT []
xref: TO_GIT:117
xref: TO_GIT:295
is_a: TO:0000843 ! portion of plant tissue morphology trait
created_by: cooperl
creation_date: 2013-04-28T15:48:43Z

[Term]
id: TO:0000907
name: exocarp thickness
def: "An exocarp morphology trait (TO:0000906) which is the thickness of the exocarp (PO:0009085)." [TO:Laurel_Cooper]
synonym: "rind thickness (exact)" EXACT []
xref: PATO:0000915
xref: TO_GIT:117
xref: TO_GIT:295
is_a: TO:0000906 ! exocarp morphology trait
relationship: part_of TO:0002728 ! fruit quality trait
created_by: cooperl
creation_date: 2013-04-28T16:05:01Z

[Term]
id: TO:0000908
name: fruit hollowness
def: "A fruit morphology trait (TO:0002617) which is the hollowness of a fruit (PO:0009001)." [PATO:0002078, PO:0009001, PO:cooperl]
xref: TO_GIT:117
is_a: TO:0002629 ! fruit morphology trait
is_a: TO:0002728 ! fruit quality trait
created_by: cooperl
creation_date: 2013-04-28T16:18:53Z

[Term]
id: TO:0000909
name: fruit color uniformity
def: "A fruit color trait (TO:0002617) which is the uniformity of the color (PATO:0000122) of the fruit (PO:0009001) ." [PATO:0000122, PO:cooperl]
comment: The proportion of the 2D area of the red color epicarp out of the total epicarp area visible from a top view of the proximal fruit end.
xref: TO_GIT:117
is_a: TO:0002617 ! fruit color
is_a: TO:0002728 ! fruit quality trait
created_by: cooperl
creation_date: 2013-04-28T16:33:44Z

[Term]
id: TO:0000910
name: fruit bitterness trait
def: "A fruit flavor trait (TO:0002694) which is the bitter fruit flavor." [TO:Laurel_Cooper]
comment: Need PATO quality: bitter - has been requested.
xref: TO_GIT:117
is_a: TO:0002694 ! fruit flavor trait
created_by: cooperl
creation_date: 2013-04-28T16:46:02Z

[Term]
id: TO:0000911
name: trichome morphology trait
def: "A plant structure morphology trait (TO:0000839) which is a quality of a trichome (PO:0000282)." [PO:0000282, TO:moorel]
xref: TO_GIT:228
is_a: TO:0000839 ! plant structure morphology trait
created_by: moorel
creation_date: 2013-06-18T14:29:56Z

[Term]
id: TO:0000912
name: trichome appressed
def: "A trichome morphology trait (TO:0000911) which is a trichome (PO:0000282) lying close to and flat against a surface of a plant structure (PO:0009011)." [PO:0000282, TO:moorel]
xref: TO_GIT:228
is_a: TO:0000911 ! trichome morphology trait
created_by: moorel
creation_date: 2013-06-18T14:31:49Z

[Term]
id: TO:0000913
name: trichome acircular
def: "A trichome morphology trait (TO:0000911) which is a needle-shaped trichome (PO:0000282)." [PO:0000282, TO:moorel]
xref: TO_GIT:228
is_a: TO:0000911 ! trichome morphology trait
created_by: moorel
creation_date: 2013-06-19T09:56:45Z

[Term]
id: TO:0000914
name: trichome canescent
def: "A trichome morphology trait (TO:0000911) which is a gray-haired and hoary trichome (PO:0000282)." [PO:0000282, TO:moorel]
xref: TO_GIT:228
is_a: TO:0000911 ! trichome morphology trait
created_by: moorel
creation_date: 2013-06-19T09:59:44Z

[Term]
id: TO:0000915
name: trichome capillary
def: "A trichome morphology trait (TO:0000911) which is a very slender or hair-like trichome (PO:0000282)." [PO:0000282, TO:moorel]
xref: TO_GIT:228
is_a: TO:0000911 ! trichome morphology trait
created_by: moorel
creation_date: 2013-06-19T10:02:55Z

[Term]
id: TO:0000916
name: trichome clavate
def: "A trichome morphology trait (TO:0000911) which is a club-shaped trichome (PO:0000282)." [PO:0000282, TO:moorel]
comment: Clavate (PATO:0001883): A concave 3-D shape quality inhering in a bearer by virtue of the bearer's gradually becoming thicker towards the end.
xref: TO_GIT:228
is_a: TO:0000911 ! trichome morphology trait
created_by: moorel
creation_date: 2013-06-19T10:06:59Z

[Term]
id: TO:0000917
name: trichome ensiform
def: "A trichome morphology trait (TO:0000911) which is  a sword-shaped trichome (PO:0000282)." [PO:0000282, TO:moorel]
comment: Blade-like (PATO:0002235): A tapered shape quality inhering in a bearer by virtue of the bearer's being flat, slender, and tapering to a point. Synonym: ensiform.
xref: TO_GIT:228
is_a: TO:0000911 ! trichome morphology trait
created_by: moorel
creation_date: 2013-06-19T10:14:01Z

[Term]
id: TO:0000918
name: trichome hirsute
def: "A trichome morphology trait (TO:0000911) which is a rough trichome (PO:0000282)." [PO:0000282, TO:moorel]
xref: TO_GIT:228
is_a: TO:0000911 ! trichome morphology trait
created_by: moorel
creation_date: 2013-06-19T10:18:46Z

[Term]
id: TO:0000919
name: grain weight
def: "A caryopsis fruit morphology trait (TO:0001079) which is the weight of a caryopsis fruit (grain or kernel; PO:0030104)." [TO:Laurel_Cooper]
comment: Grain weight (TO:0000919) is a general parent term, covering the weights of various types of caryopsis fruits (PO:0030104), and doesn't specify if they are hulled or dehulled.
synonym: "20 kernel weight (narrow)" NARROW []
synonym: "caryopsis fruit weight (exact)" EXACT []
synonym: "GRWT (exact)" EXACT []
synonym: "kernel weight (exact)" EXACT []
synonym: "kwt (related)" RELATED [MaizeGDB:78154]
xref: TO_GIT:242
is_a: TO:0001079 ! caryopsis fruit morphology trait
relationship: part_of TO:0000396 ! grain yield trait
created_by: cooperl
creation_date: 2013-11-14T14:06:21Z

[Term]
id: TO:0000920
name: infructescence morphology trait
def: "A reproductive shoot system morphology trait (TO:0000786) which is a quality of the infructescence (PO:0006342)." [TO:Laurel_Cooper]
xref: TO_GIT:244
is_a: TO:0000786 ! reproductive shoot system morphology trait
created_by: cooperl
creation_date: 2013-11-15T13:32:29Z

[Term]
id: TO:0000921
name: infructescence axis morphology trait
def: "A shoot axis morphology trait (TO:0000739) which is a quality of an infructescence axis (PO:0025242)." [TO:Laurel_Cooper]
xref: TO_GIT:243
is_a: TO:0000739 ! shoot axis morphology trait
created_by: cooperl
creation_date: 2013-11-15T15:54:24Z

[Term]
id: TO:0000922
name: cob weight
def: "An infructescence axis morphology trait (TO:0000921) which is the weight of a cob." [TO:moorel]
comment: Refers to mass (PATO:0000125) A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.
xref: PATO:0000125
xref: TO_GIT:109
is_a: TO:0000921 ! infructescence axis morphology trait
created_by: moorel
creation_date: 2014-01-07T12:48:27Z

[Term]
id: TO:0000923
name: ear weight
def: "An ear infructescence morphology trait (TO:0000976) that is the weight of an ear infructescence (PO:0025597)." [TO:Laurel_Cooper]
comment: Refers to mass (PATO:0000125): A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.
subset: Zea_mays
synonym: "earwt (related)" RELATED [MaizeGDB:???]
xref: MaizeGDB_QTL:65408
xref: PATO:0000125
xref: TO_GIT:244
is_a: TO:0000583 ! infructescence weight
is_a: TO:0000976 ! ear infructescence morphology trait
created_by: cooperl
creation_date: 2013-12-10T20:53:38Z

[Term]
id: TO:0000924
name: cob color
def: "An infructescence axis morphology trait (TO:0000921) which is the color of a cob." [TO:moorel]
comment: Refers to color (PATO:0000014) A composite chromatic quality composed of hue, saturation and intensity parts.
synonym: "cobpig (related)" RELATED [MaizeGDB_QTL:67275]
xref: PATO:0000014
xref: TO_GIT:109
is_a: TO:0000921 ! infructescence axis morphology trait
created_by: moorel
creation_date: 2014-01-07T12:50:18Z

[Term]
id: TO:0000925
name: non-vascular leaf morphology trait
def: "A leaf morphology trait (TO:0000748) which is a quality of a non-vascular leaf (PO:0025075)." [PO:0025075, TO:moorel]
xref: TO_GIT:246
is_a: TO:0000748 ! leaf morphology trait
created_by: moorel
creation_date: 2014-01-07T13:45:07Z

[Term]
id: TO:0000926
name: multi-tissue plant structure growth and development trait
def: "A plant structure growth and development trait (TO:0000928) that has as primary participant a multi-tissue plant structure (PO:0025496)." [TO:Laurel_Cooper]
xref: TO_GIT:250
is_a: TO:0000928 ! plant structure growth and development trait
created_by: cooperl
creation_date: 2014-01-16T12:55:32Z

[Term]
id: TO:0000927
name: plant organ growth and development trait
def: "A multi-tissue plant structure development trait (TO:0000927) that has as primary participant a plant organ (PO:0009008)." [TO:Laurel_Cooper]
xref: TO_GIT:251
is_a: TO:0000926 ! multi-tissue plant structure growth and development trait
created_by: cooperl
creation_date: 2014-01-16T12:57:38Z

[Term]
id: TO:0000928
name: plant structure growth and development trait
def: "A plant growth and development trait (TO:0000357) which is a quality of a plant structure development stage (PO:0009028)." [TO:Laurel_Cooper]
xref: TO_GIT:252
is_a: TO:0000357 ! plant growth and development trait
created_by: cooperl
creation_date: 2014-01-16T13:36:38Z

[Term]
id: TO:0000929
name: fruit growth and development trait
def: "A multi-tissue plant structure development trait (TO:0000927) that has as primary participant a fruit (PO:0009001)." [TO:Laurel_Cooper]
xref: TO_GIT:255
is_a: TO:0000926 ! multi-tissue plant structure growth and development trait
created_by: cooperl
creation_date: 2014-01-16T14:38:50Z

[Term]
id: TO:0000930
name: seed shattering
def: "A seed growth and development trait (TO:0000653) which is the extent of seed shattering based on the development of an abscission zone (PO:0000146)." [PO:0000146, TO:moorel]
synonym: "hilum abscission (related)" RELATED [SOY:0001341]
xref: SOY:0001341
xref: TO_GIT:249
is_a: TO:0000653 ! seed growth and development trait
created_by: moorel
creation_date: 2014-01-21T10:24:42Z

[Term]
id: TO:0000931
name: seed quality trait
def: "A plant quality trait (TO:0000597) which is the commercial and/or economic value of a seed (PO:0009010)." [TO:Laurel_Cooper]
xref: TO_GIT:209
is_a: TO:0000597 ! plant quality trait
created_by: cooperl
creation_date: 2014-03-17T11:41:08Z

[Term]
id: TO:0000932
name: mannose content
def: "A hexose content trait (TO:0000307) which is the amount of mannose (CHEBI:37684)." [TO:Laurel_Cooper]
synonym: "D-mannose content  (narrow)" NARROW []
synonym: "man content  (related)" RELATED []
xref: TO_GIT:259
is_a: TO:0000307 ! hexose content
created_by: cooperl
creation_date: 2014-04-30T11:28:13Z

[Term]
id: TO:0000933
name: plant phenological trait
def: "A growth and development trait (TO:0000357) which is the timing of the occurrence of plant structure development stages (PO:0009012) and the relevant biological processes (GO:0008150)." [TO:Laurel_Cooper]
xref: TO_GIT:266
is_a: TO:0000357 ! plant growth and development trait
created_by: cooperl
creation_date: 2014-05-05T17:32:19Z

[Term]
id: TO:0000934
name: photoperiod-sensitive flowering time trait
def: "A flowering time trait (TO:0002616) which is the difference between the time to flowering stage (PO:0007616) in long photoperiod (PECO:0007199) and short photoperiod (PECO:0007200) environments." [TO:Laurel_Cooper]
synonym: "flowering time response to photoperiod trait (exact)" EXACT []
xref: MaizeGDB_QTL:64797
xref: TO_GIT:265
is_a: TO:0002616 ! flowering time trait
created_by: cooperl
creation_date: 2014-05-06T16:41:00Z

[Term]
id: TO:0000935
name: kernel weight per ear
def: "A grain weight (TO:0000919) which is the total weight of all kernels on the primary ear infructescence (PO:0025597)." [MaizeGDB:Mary_Schaeffer, TO:Laurel_Cooper]
xref: TO_GIT:280
is_a: TO:0000919 ! grain weight
created_by: cooperl
creation_date: 2014-06-27T08:27:30Z

[Term]
id: TO:0000936
name: infructescence yield trait
def: "A shoot system yield trait (TO:0000327) which is a quality of an infructescence (PO:0006342), or the number born on a plant." [TO:Laurel_Cooper]
synonym: "seeds per panicle (related)" RELATED []
xref: TO_GIT:285
is_a: TO:0000327 ! shoot system yield trait
created_by: cooperl
creation_date: 2014-09-02T16:37:45Z

[Term]
id: TO:0000937
name: kernel number per ear
def: "An infructescence yield trait (TO:0000936) that is the number of kernels (fruit; PO:0009001) per ear infructescence (PO:0025597)." [PMID:22027895, TO:Laurel_Cooper]
comment: Often calculated as the number of kernel rows in the middle of the ear times number of kernels per row. Also calculated based on total weight of kernels for an ear and average weight/kernel (Hung et al 2012).
xref: MaizeGDB_QTL:99383
xref: TO_GIT:283
is_a: TO:0000936 ! infructescence yield trait
created_by: cooperl
creation_date: 2014-09-02T17:16:07Z

[Term]
id: TO:0000938
name: kernel number per row
def: "An infructescence yield trait (TO:0000936) that is the number of kernels (fruit; PO:0009001) per row on an ear infructescence (PO:0025597)." [TO:Laurel_Cooper]
xref: MaizeGDB_QTL:78114
xref: TO_GIT:284
is_a: TO:0000936 ! infructescence yield trait
created_by: cooperl
creation_date: 2014-09-02T18:07:39Z

[Term]
id: TO:0000939
name: tassel spike length
def: "An inflorescence axis length (TO:0001072) which is the length of the first order tassel inflorescence axis (PO:0006324) from the most distal branch point to the tip of the tassel inflorescence (PO:0020126)." [PMID:28373892, TO:Laurel_Cooper]
synonym: "first order tassel inflorescence axis length (exact)" EXACT []
xref: TO_GIT:272
is_a: TO:0001072 ! inflorescence axis length
relationship: part_of TO:0000798 ! tassel inflorescence length
created_by: cooperl
creation_date: 2014-09-08T11:52:52Z

[Term]
id: TO:0000940
name: tassel branch zone length
def: "An inflorescence axis length (TO:0001072) which is the length of the first order tassel inflorescence axis (PO:0006324) where the tassel inflorescence branches (PO:0006323) arise." [PMID:28373892, TO:Laurel_Cooper]
xref: TO_GIT:272
is_a: TO:0001072 ! inflorescence axis length
relationship: part_of TO:0000798 ! tassel inflorescence length
created_by: cooperl
creation_date: 2014-09-08T11:53:39Z

[Term]
id: TO:0000941
name: rank number per ear
def: "An infructescence yield trait (TO:0000936) which is the number of ranks of cupules per ear infructescence (PO:0025597)." [TO:Laurel_Cooper]
comment: Used to look at QTL traits in crosses between Teosinte and maize. In order to compare the two types of ears, the kernel row number (TO:0000687; maize) is divided by two.
xref: MaizeGDB_QTL:65770
xref: TO_GIT:288
is_a: TO:0000936 ! infructescence yield trait
created_by: cooperl
creation_date: 2014-09-08T14:05:22Z

[Term]
id: TO:0000942
name: aleurone layer morphology trait
def: "A portion of plant tissue morphology trait (TO:0000843) which is the qualities of the aleurone layer (PO:0005360)." [TO:Laurel_Cooper]
subset: Hordeum_vulgare
subset: Triticum_aestivum
subset: Zea_mays
xref: TO_GIT:291
is_a: TO:0000843 ! portion of plant tissue morphology trait
relationship: part_of TO:0000575 ! endosperm morphology trait
created_by: cooperl
creation_date: 2015-07-21T15:15:42Z

[Term]
id: TO:0000943
name: aleurone layer color
def: "An aleurone layer appearance (TO:0000944) that is the color of the aleurone layer (PO:0005360)." [TO:Laurel_Cooper]
xref: PATO:0000014
xref: TO_GIT:291
is_a: TO:0000944 ! aleurone layer appearance
created_by: cooperl
creation_date: 2015-07-21T15:16:24Z

[Term]
id: TO:0000944
name: aleurone layer appearance
def: "An aleurone layer morphology trait (TO:0000942) that is the appearance of the aleurone layer (PO:0005360)." [TO:Laurel_Cooper]
xref: TO_GIT:291
is_a: TO:0000942 ! aleurone layer morphology trait
created_by: cooperl
creation_date: 2015-07-21T16:08:50Z

[Term]
id: TO:0000945
name: pericarp morphology trait
def: "A portion of plant tissue morphology trait (TO:0000843) which is a quality of the pericarp (PO:0009084)." [TO:Laurel_Cooper]
xref: TO_GIT:292
is_a: TO:0000843 ! portion of plant tissue morphology trait
created_by: cooperl
creation_date: 2015-07-22T15:54:55Z

[Term]
id: TO:0000946
name: endocarp morphology trait
def: "A portion of plant tissue morphology trait (TO:0000843) which is a quality of the endocarp (PO:0009086)." [TO:austin_meier]
xref: TO_GIT:293
is_a: TO:0000843 ! portion of plant tissue morphology trait
created_by: austinmeier
creation_date: 2015-07-22T17:16:05Z

[Term]
id: TO:0000947
name: whole plant growth and development trait
def: "A plant structure growth and development trait (TO:0000928) which is a quality of a whole plant development stage (PO:0007033)." [TO:ethan_johnson]
xref: TO_GIT:297
is_a: TO:0000928 ! plant structure growth and development trait
created_by: johnseth
creation_date: 2015-07-23T14:28:41Z

[Term]
id: TO:0000948
name: mesocarp morphology trait
def: "A portion of plant tissue morphology trait (TO:0000843) which is a quality of a mesocarp (PO:0009087)." [TO:austin_meier]
xref: TO_GIT:294
is_a: TO:0000843 ! portion of plant tissue morphology trait
created_by: austinmeier
creation_date: 2015-07-22T17:28:39Z

[Term]
id: TO:0000949
name: seedling growth and development trait
def: "A whole plant growth and development trait (TO:0000947) which is a quality of a seedling development stage (PO:0007131)." [TO:ethan_johnson]
xref: TO_GIT:298
is_a: TO:0000947 ! whole plant growth and development trait
created_by: johnseth
creation_date: 2015-07-23T14:39:53Z

[Term]
id: TO:0000950
name: corolla morphology trait
def: "A collective phyllome structure morphology trait (TO:0000845) that is a quality of a corolla (PO:0009059)." [TO:Laurel_Cooper]
xref: TO_GIT:299
is_a: TO:0000845 ! collective phyllome structure morphology trait
created_by: cooperl
creation_date: 2015-07-27T14:48:47Z

[Term]
id: TO:0000951
name: corolla color
def: "A corolla morphology trait (TO:0000950) that is the color of a corolla (PO:0009059)." [TO:Laurel_Cooper]
xref: PATO:0000014
xref: TO_GIT:299
is_a: TO:0000950 ! corolla morphology trait
created_by: cooperl
creation_date: 2015-07-27T15:41:16Z

[Term]
id: TO:0000952
name: stem weight
def: "A stem morphology trait (TO:0000361) which is the weight of a stem (PO:0009047)." [TO:Laurel_Cooper]
synonym: "stalk weight (narrow)" NARROW []
xref: PATO:0000128
xref: TO_GIT:157
is_a: TO:0000361 ! stem morphology trait
created_by: cooperl
creation_date: 2015-08-27T15:05:35Z

[Term]
id: TO:0000953
name: stem number
def: "A shoot system morphology trait (TO:0000077) which is the number of stems (PO:0009047)." [TO:Laurel_Cooper]
synonym: "stalk number (narrow)" NARROW []
xref: PATO:0001555
xref: TO_GIT:57
is_a: TO:0000077 ! shoot system morphology trait
created_by: johnseth
creation_date: 2015-08-27T16:03:16Z

[Term]
id: TO:0000954
name: spikelet rachilla morphology trait
def: "An inflorescence branch morphology trait (TO:0000784) which is a quality of a spikelet rachilla (PO:0009080)." [TO:Ethan_Johnson]
xref: PATO:0000051
xref: TO_GIT:106
is_a: TO:0000784 ! inflorescence branch morphology trait
created_by: johnseth
creation_date: 2015-10-19T14:35:34Z

[Term]
id: TO:0000955
name: cyanide content
def: "A metabolite content related trait (TO:0000281) which is the amount of cyanide (CHEBI:17514) occurring in a plant structure (PO:0009011)." [TO:Laurel_Cooper]
xref: CHEBI:17514
is_a: TO:0000281 ! metabolite content trait

[Term]
id: TO:0000958
name: cob shape
def: "An infructescence axis morphology trait (TO:0000921) which is the shape of a cob." [TO:ejohnson]
xref: PATO:0000052
xref: TO_GIT:109
is_a: TO:0000921 ! infructescence axis morphology trait
created_by: johnseth
creation_date: 2015-09-01T14:35:54Z

[Term]
id: TO:0000959
name: cob length
def: "An infructescence axis morphology trait (TO:0000921) which is the length of a cob." [TO:ejohnson]
xref: PATO:0000122
xref: TO_GIT:109
is_a: TO:0000921 ! infructescence axis morphology trait
created_by: johnseth
creation_date: 2015-09-01T14:44:47Z

[Term]
id: TO:0000960
name: cob width
def: "An infructescence axis morphology trait (TO:0000921) which is the width of a cob." [TO:ejohnson]
xref: PATO:0000921
xref: TO_GIT:109
is_a: TO:0000921 ! infructescence axis morphology trait
created_by: johnseth
creation_date: 2015-09-01T14:51:33Z

[Term]
id: TO:0000961
name: cob area
def: "An infructescence axis morphology trait (TO:0000921) which is the area of a cob." [TO:ejohnson]
xref: PATO:0001323
xref: TO_GIT:109
is_a: TO:0000921 ! infructescence axis morphology trait
created_by: johnseth
creation_date: 2015-09-01T15:00:53Z

[Term]
id: TO:0000962
name: cob angle
def: "An infructescence axis morphology trait (TO:0000921) which is the angle of a cob." [TO:ejohnson]
xref: PATO:0002326
xref: TO_GIT:109
is_a: TO:0000921 ! infructescence axis morphology trait
created_by: johnseth
creation_date: 2015-09-01T15:15:37Z

[Term]
id: TO:0000963
name: ear color
def: "An ear infructescence morphology trait (TO:0000976) which is the color of an ear infructescence (PO:0025597)." [TO:Ethan_Johnson]
synonym: "ear infructescence color (exact)" EXACT []
xref: PATO:0000014
xref: TO_GIT:132
is_a: TO:0000976 ! ear infructescence morphology trait
created_by: johnseth
creation_date: 2015-09-01T15:52:16Z

[Term]
id: TO:0000964
name: ear shape
def: "An ear infructescence morphology trait (TO:0000976) which is the shape of an ear infructescence (PO:0025597)." [TO:Ethan_Johnson]
synonym: "ear infructescence shape (exact)" EXACT []
xref: PATO:0000052
xref: TO_GIT:132
is_a: TO:0000976 ! ear infructescence morphology trait
created_by: johnseth
creation_date: 2015-09-01T16:07:23Z

[Term]
id: TO:0000965
name: ear aspect
def: "An ear infructescence morphology trait (TO:0000976) which is the qualitative rating of the harvested ear infructescence (PO:0025597)." [TO:Ethan_Johnson]
synonym: "ear infructescence aspect (exact)" EXACT []
xref: TO_GIT:132
is_a: TO:0000976 ! ear infructescence morphology trait
created_by: johnseth
creation_date: 2015-09-01T16:12:33Z

[Term]
id: TO:0000966
name: ear infructescence position ratio
def: "An ear infructescence morphology trait (TO:0000976) which is the ratio of ear infructescence position (TO:0000683) to plant height (TO:0000207)." [TO:Ethan_Johnson, TO:Laurel_Cooper]
synonym: "ear position ratio (related)" RELATED []
xref: TO_GIT:132
is_a: TO:0000976 ! ear infructescence morphology trait
created_by: johnseth
creation_date: 2015-09-01T16:17:13Z

[Term]
id: TO:0000967
name: hilum morphology trait
def: "A seed morphology trait (TO:0000184) which is a quality of a hilum (PO:0020063)." [TO:austin_meier]
xref: TO_GIT:81
is_a: TO:0000184 ! seed morphology trait
created_by: meiera
creation_date: 2015-10-13T11:16:35Z

[Term]
id: TO:0000968
name: hilum color
def: "A hilum morphology trait (TO:0000967) which is the color of a hilum (PO:0020063)." [TO:austin_meier]
xref: TO_GIT:81
is_a: TO:0000967 ! hilum morphology trait
created_by: meiera
creation_date: 2015-10-13T11:19:20Z

[Term]
id: TO:0000969
name: ear inflorescence morphology trait
def: "An inflorescence morphology trait (TO:0000373) which is a quality of an ear inflorescence (PO:0020136)." [TO:Laurel_Cooper]
xref: TO_GIT:97
is_a: TO:0000373 ! inflorescence morphology trait
created_by: cooperl
creation_date: 2015-10-16T14:24:59Z

[Term]
id: TO:0000970
name: panicle density
def: "An inflorescence density (TO:0000800) trait which is a quality of a panicle inflorescence (PO:0030123)." [TO:Laurel_Cooper]
xref: TO_GIT:97
is_a: TO:0000800 ! inflorescence density
is_a: TO:0000847 ! panicle inflorescence morphology trait
created_by: cooperl
creation_date: 2015-10-16T15:23:56Z

[Term]
id: TO:0000971
name: inflorescence hairiness
def: "An inflorescence morphology trait (TO:0000373) which is the presence or absence of hairs on an inflorescence (PO:0009049)." [TO:Laurel_Cooper]
synonym: "head hairiness (narrow)" NARROW []
xref: PATO:0000454
xref: TO_GIT:97
is_a: TO:0000373 ! inflorescence morphology trait
created_by: cooperl
creation_date: 2015-10-16T15:53:14Z

[Term]
id: TO:0000972
name: spikelet rachilla length
def: "An inflorescence branch morphology trait (TO:0000784) which is the length of a spikelet rachilla (PO:0009080)." [TO:Ethan_Johnson]
synonym: "rachilla length  (broad)" BROAD []
xref: PATO:0000122
xref: TO_GIT:106
is_a: TO:0000954 ! spikelet rachilla morphology trait
created_by: johnseth
creation_date: 2015-10-19T14:40:20Z

[Term]
id: TO:0000973
name: spikelet rachilla shape
def: "An inflorescence branch morphology trait (TO:0000784) which is the shape of a spikelet rachilla (PO:0009080)." [TO:Ethan_Johnson]
synonym: "rachilla shape (broad)" BROAD []
xref: PATO:0000052
xref: TO_GIT:106
is_a: TO:0000954 ! spikelet rachilla morphology trait
created_by: johnseth
creation_date: 2015-10-19T14:46:04Z

[Term]
id: TO:0000974
name: spikelet rachilla hair type
def: "An inflorescence branch morphology trait (TO:0000784) which is the pubescence of a spikelet rachilla (PO:0009080)." [TO:Ethan_Johnson]
synonym: "rachilla hair type  (broad)" BROAD []
xref: PATO:0000454
xref: TO_GIT:106
is_a: TO:0000954 ! spikelet rachilla morphology trait
created_by: johnseth
creation_date: 2015-10-19T14:47:51Z

[Term]
id: TO:0000975
name: grain width
def: "A caryopsis fruit morphology trait (TO:0001079) which is the width of a grain (PO:0009001)." [TO:austin_meier, TO:Laurel_Cooper]
synonym: "caryopsis width (exact)" EXACT []
synonym: "kernel width (exact)" EXACT []
is_a: TO:0001079 ! caryopsis fruit morphology trait
created_by: meiera
creation_date: 2015-10-20T15:15:19Z

[Term]
id: TO:0000976
name: ear infructescence morphology trait
def: "An infructescence morphology trait (TO:0000920) which is a quality of the ear infructescence (PO:0025597)." [TO:Ethan_Johnson]
xref: TO_GIT:132
xref: TO_GIT:144
is_a: TO:0000920 ! infructescence morphology trait
created_by: johnseth
creation_date: 2015-10-22T09:35:32Z

[Term]
id: TO:0000977
name: leaf foliage rating
def: "A leaf area trait (TO:0000540) that is the size of the total surface area of a leaf (PO:0025034)." [TO:Ethan_Johnson]
comment: Comment: rating scale of  3, small; 5, intermediate; 7 large
xref: TO_GIT:139
is_a: TO:0000540 ! leaf area trait
created_by: johnseth
creation_date: 2015-10-23T10:29:59Z

[Term]
id: TO:0000978
name: glume shape
def: "A glume morphology trait (TO:0000869) with is the shape of a glume (PO:0009039)." [TO:Ethan_Johnson]
xref: TO_GIT:166
is_a: TO:0000869 ! glume morphology trait
created_by: johnseth
creation_date: 2015-10-23T10:46:05Z

[Term]
id: TO:0000979
name: involucre morphology trait
def: "A collective phyllome structure morphology trait (TO:0000845) that is a quality of an involucre (PO:0009100)." [TO:Ethan_Johnson]
xref: TO_GIT:153
is_a: TO:0000845 ! collective phyllome structure morphology trait
created_by: johnseth
creation_date: 2015-11-02T15:02:56Z

[Term]
id: TO:0000980
name: plant embryo cotyledon color
def: "A plant embryo cotyledon morphology trait (TO:0000775) which is the color of the plant embryo cotyledon (PO:0025470)." [PATO:0000014]
synonym: "plant embryo cotyledon colour (exact)" EXACT []
xref: TO_GIT:353
is_a: TO:0000775 ! plant embryo cotyledon morphology trait
created_by: TO_austin_meier

[Term]
id: TO:0000985
name: root system morphology trait
def: "A collective plant organ structure morphology trait (TO:0000842) which is a quality of a root system (PO:0025025)." [PO:0025025]
xref: TO_GIT:359
is_a: TO:0000842 ! collective plant organ structure morphology trait
created_by: Ethan_Johnson

[Term]
id: TO:0000986
name: staminate flower number trait
def: "A flower number trait (TO:0002736) which is the number of staminate flowers (PO:0025600)." []
synonym: "male flower number trait (exact)" EXACT []
xref: PATO:0001555
xref: TO_GIT:356
is_a: TO:0002736 ! flower number trait
created_by: ethan_johnson

[Term]
id: TO:0000987
name: pistillate flower number trait
def: "A flower number trait (TO:0002736) which is the number of pistillate flowers (PO:0025599)." []
synonym: "female flower number trait (exact)" EXACT []
xref: PATO:0001555
xref: TO_GIT:356
is_a: TO:0002736 ! flower number trait
created_by: ethan_johnson

[Term]
id: TO:0000988
name: shoot-borne shoot system morphology trait
def: "A shoot system morphology trait (TO:0000077) that is a quality of a shoot-borne shoot system (PO:0004545)." []
xref: TO_GIT:332
is_a: TO:0000077 ! shoot system morphology trait
created_by: ethan_johnson

[Term]
id: TO:0000989
name: epicormic shoot system morphology trait
def: "A shoot-borne shoot system morphology trait (TO:0000988) that is a quality of an epicormic shoot system (PO:0004546)." []
xref: TO_GIT:332
is_a: TO:0000988 ! shoot-borne shoot system morphology trait
created_by: ethan_johnson

[Term]
id: TO:0000990
name: seed hardness
def: "A seed morphology trait (TO:0000184) which is the hardness of a seed (PO:0009010)." [TO:Laurel_Cooper]
xref: PATO:0000048
is_a: TO:0000184 ! seed morphology trait
created_by: ethan_johnson

[Term]
id: TO:0000991
name: epicormic shoot system number
def: "An epicormic shoot system morphology trait (TO:0000989) which is the number of epicormic shoot systems (PO:0004546)." []
synonym: "stem sucker number (exact)" EXACT []
xref: TO_GIT:332
is_a: TO:0000989 ! epicormic shoot system morphology trait
created_by: ethan_johnson

[Term]
id: TO:0000992
name: gibberellin biosynthesis trait
def: "A biological process trait (TO:0000283) which is a quality of a gibberellin biosynthetic process (GO:0009686)." []
comment: Refers to gibberellin (CHEBI:24250)
synonym: "gibberellin biosynthesis (broad)" BROAD []
xref: TO_GIT:383
is_a: TO:0000283 ! biological process trait
created_by: ethan_johnson

[Term]
id: TO:0000993
name: cellulose content
def: "A polysaccharide content trait (TO:0006007) which is the amount of cellulose (CHEBI:62968) in a plant structure (PO:0009011)." [TO:Laurel_Cooper]
comment: Refers to crystalline cellulose (CHEBI:62968): A (1→4)-β-D-glucan (cellulose) in crystalline form with a structure consisting of several hundred to over ten thousand D-glucose residues joined by β(1→4) glycosidic linkages.
xref: TO_GIT:384
is_a: TO:0006007 ! polysaccharide content
created_by: ethan_johnson

[Term]
id: TO:0000994
name: androecium morphology trait
def: "A collective phyllome structure morphology trait (TO:0000845) that is a quality of the androecium (PO:0009061)." [PO:0009061, TO:Laurel_Cooper]
xref: TO_GIT:386
is_a: TO:0000845 ! collective phyllome structure morphology trait
created_by: ethan_johnson

[Term]
id: TO:0000995
name: aluminum content trait
def: "A mineral and ion content trait (TO:0000465) which is the aluminium cation (CHEBI:63062) composition in a plant structure (PO:0009011)." [TO:Laurel_Cooper]
synonym: "Al content (exact)" EXACT []
synonym: "aluminium content (exact)" EXACT []
xref: TO_GIT:412
is_a: TO:0000465 ! mineral and ion content trait

[Term]
id: TO:0000996
name: flag leaf area
def: "A flag leaf anatomy and morphology trait (TO:0000832) which is the area of a flag leaf (PO:0020103)." [PMID:25785447, PMID:26841834, TO:Laurel_Cooper]
xref: TO_GIT:415
is_a: TO:0000832 ! flag leaf morphology trait
creation_date: 2017-07-10T10:36:57Z

[Term]
id: TO:0000997
name: polished grain length
def: "A grain length (TO:0000734) measured on a dehulled, polished grain." [PMID:26842267, TO:Laurel_Cooper]
synonym: "white rice grain length (narrow)" NARROW []
xref: TO_GIT:415
is_a: TO:0000734 ! grain length
creation_date: 2017-07-10T10:36:57Z

[Term]
id: TO:0000998
name: polished grain width
def: "A grain width (TO:0000975) which is the width of the dehulled, polished grain." [PMID:26842267, TO:Laurel_Cooper]
synonym: "white rice grain width (narrow)" NARROW []
xref: TO_GIT:415
is_a: TO:0000402 ! dehulled grain width
creation_date: 2017-07-10T10:36:57Z

[Term]
id: TO:0000999
name: polished grain length to width ratio
def: "A grain length to width ratio (TO:0002731) measured on a dehulled, polished grain." [TO:Laurel_Cooper]
synonym: "white rice grain length to width ratio (narrow)" NARROW []
xref: TO_GIT:415
is_a: TO:0002731 ! dehulled grain length to width ratio
creation_date: 2017-07-10T10:36:57Z

[Term]
id: TO:0001000
name: glume cover
def: "A glume morphology trait (TO:0000869) which is amount the glume (PO:0009039) covers the caryopsis. Often measured as percentage." [Gramene:pankaj_jaiswal, PO:0009039, TO:moorel]
is_a: TO:0000869 ! glume morphology trait

[Term]
id: TO:0001001
name: glume persistence
def: "A glume morphology trait (TO:0000869) which is the persistence of a glume (PO:0009039)." [Gramene:pankaj_jaiswal, PO:0009039, TO:moorel]
comment: Measured as percentage of kernels or seeds carrying the glume after threshing. In a normal setup the seeds do not have glumes after the threshing process.\nRefer to persistence (PATO:0000082): A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm.
xref: PATO:0000082
is_a: TO:0000869 ! glume morphology trait

[Term]
id: TO:0001002
name: inflorescence exsertion
def: "An inflorescence morphology trait (TO:0000373) which is the exsertion of an inflorescence (PO:0009049)." [PO:0009049, TO:moorel]
xref: TO_GIT:97
is_a: TO:0000373 ! inflorescence morphology trait

[Term]
id: TO:0001003
name: plant height uniformity
def: "A visual estimate of the plant height for a group of plants in an experiment." [Gramene:pankaj_jaiswal]
is_a: TO:0000207 ! plant height

[Term]
id: TO:0001004
name: basal tiller number
def: "Number of basal tillers per plant, should represent most plants within a study." [Gramene:pankaj_jaiswal]
synonym: "basal axillary shoot number (related)" RELATED []
is_a: TO:0000346 ! tiller number

[Term]
id: TO:0001005
name: basal tiller height
def: "The height of the tallest basal tiller (basal axillary shoot) of a plant." [Gramene:pankaj_jaiswal]
synonym: "basal tiller height (related)" RELATED []
is_a: TO:0001168 ! basal axillary shoot system morphology trait

[Term]
id: TO:0001006
name: adventitious root number
def: "A root number (TO:0000084) trait which is the number of adventitious roots (shoot-borne root; PO:0000042)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Adventitious root can be a 'shoot-borne root' (PO:0000042) or one of the child terms- all have adventitious root as a broad synonym. Shoot-borne roots are part of the root system (PO:0025025).
is_a: TO:0000084 ! root number

[Term]
id: TO:0001007
name: coleoptile length
def: "A coleoptile morphology trait (TO:0000753) which is the length of a coleoptile (PO:0020033)." [Gramene:pankaj_jaiswal, PO:0020033, TO:Laurel_Cooper]
xref: PATO:0000122
xref: TO_GIT:62
is_a: TO:0000753 ! coleoptile morphology trait

[Term]
id: TO:0001008
name: days to flag leaf emergence
def: "In grass plants the number of days required for the full emergence of the flag leaf in a field or study. It can be counted from date of seed sowing or the transplant (in case of rice)." [Gramene:pankaj_jaiswal]
is_a: TO:0000655 ! leaf growth and development trait

[Term]
id: TO:0001009
name: deep root number
def: "A count of number of roots present below a given depth from the soil surface." [Gramene:pankaj_jaiswal]
is_a: TO:0000084 ! root number

[Term]
id: TO:0001010
name: senesced leaf number
def: "Number of leaves in a plant that have undergone leaf senescence stage or are considered dead." [Gramene:pankaj_jaiswal]
synonym: "dead leaf number (narrow)" NARROW []
is_a: TO:0000241 ! leaf number

[Term]
id: TO:0001011
name: deep root weight ratio
def: "A ratio of the deep root dry weight to total root dry weight per plant." [Gramene:pankaj_jaiswal]
synonym: "deep root dry weight to total root dry weight ratio (exact)" EXACT []
is_a: TO:0000279 ! root weight

[Term]
id: TO:0001012
name: lateral root length
def: "A root length (TO:0000227) that is the length of one or more lateral roots (PO:0020121)." [Gramene:pankaj_jaiswal, TO:austin_meier, TO:seymour_megan]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
xref: PATO:0000122
xref: TO_GIT:365
is_a: TO:0000227 ! root length

[Term]
id: TO:0001013
name: lateral root number
def: "Average sum of number of lateral roots in a plant derived per experiment." [Gramene:pankaj_jaiswal]
is_a: TO:0000084 ! root number

[Term]
id: TO:0001014
name: leaf dry weight
def: "A leaf weight trait (TO:0000505) which is the dry weight of a leaf (PO:0025034)." [Gramene:pankaj_jaiswal, PO:0025034, TO:moorel]
is_a: TO:0000505 ! leaf weight

[Term]
id: TO:0001015
name: photosynthetic rate
def: "The total amount of carbon fixed by the plant per unit time and is measured by determining the changes in CO2 concentration over a plant leaf in a glass enclosure." [Gramene:pankaj_jaiswal]
synonym: "gross photosynthetic rate (related)" RELATED []
synonym: "leaf photosynthetic rate (related)" RELATED []
is_a: TO:0000283 ! biological process trait

[Term]
id: TO:0001016
name: relative chlorophyll content
def: "A chlorophyll content trait (TO:0000495) which is the relative chlorophyll content of a plant structure (PO:0009011) after a treatment, as compared to that determined under normal growth conditions." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
is_a: TO:0000495 ! chlorophyll content

[Term]
id: TO:0001017
name: water use efficiency
def: "As determined by the ratio of photosynthetic rate to transpiration rate." [Gramene:pankaj_jaiswal]
synonym: "photosynthetic rate to transpiration rate ratio (exact)" EXACT []
is_a: TO:0000237 ! water stress response trait

[Term]
id: TO:0001018
name: transpiration rate
def: "The rate of  transpiration." [Gramene:pankaj_jaiswal]
xref: GO:0010148
is_a: TO:0000283 ! biological process trait

[Term]
id: TO:0001019
name: root to total biomass ratio
def: "A ratio of root dry weight to total plant dry weight." [Gramene:pankaj_jaiswal]
synonym: "root dry weight to total plant dry weight ratio (related)" RELATED []
is_a: TO:0001041 ! root yield

[Term]
id: TO:0001020
name: exudate sap volume
def: "Volume of the sap exudate collected from the cut parts of a plant." [Gramene:pankaj_jaiswal]
synonym: "Sap per tiller (related)" RELATED []
is_a: TO:0000327 ! shoot system yield trait

[Term]
id: TO:0001021
name: days to inflorescence exsertion
def: "Number of days required for the emergence of inflorescence to become visible on the plant." [Gramene:pankaj_jaiswal]
comment: Often in grasses it emerges from the flag leaf which is the top most leaf on the shoot.
synonym: "days to inflorescence emergence (related)" RELATED []
is_a: TO:0002616 ! flowering time trait

[Term]
id: TO:0001022
name: days to tassel emergence
def: "Number of days required for the tassel to emerge from the flag leaf in a maize plant or a group of plants in a study." [Gramene:pankaj_jaiswal]
comment: Often determined when the 50% length of the tassel has emerged as compared to its full length. Number of days is calculated from the day of sowing of the seeds.
is_a: TO:0001021 ! days to inflorescence exsertion

[Term]
id: TO:0001023
name: days to ear shoot emergence
def: "Number of days required for the ear shoot to emerge from the given leaf sheath in a maize plant or a group of plants in a study." [Gramene:pankaj_jaiswal]
comment: Often determined when the 50% length of the ear has emerged as compared to its full length. Number of days is calculated from the day of sowing of the seeds.
is_a: TO:0001021 ! days to inflorescence exsertion

[Term]
id: TO:0001024
name: phosphorus content
def: "A mineral and ion content trait (TO:0000465) which is the phosphorus cation (CHEBI:33467) composition in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "PHOCN (related)" RELATED []
is_a: TO:0000465 ! mineral and ion content trait
created_by: jaiswalp

[Term]
id: TO:0001025
name: leaf phosphorus content
def: "Amount of phosphorus in the leaf." [Gramene:pankaj_jaiswal]
comment: Often measured in per unit dry weight.
synonym: "LFPHOCN (related)" RELATED []
is_a: TO:0001024 ! phosphorus content

[Term]
id: TO:0001026
name: respiration rate
def: "The total amount of carbon lost metabolically by the plant per unit time and is measured by determining the increase in CO2 concentration over a plant leaf in a glass enclosure." [Gramene:pankaj_jaiswal]
is_a: TO:0000283 ! biological process trait

[Term]
id: TO:0001027
name: net photosynthetic rate
def: "It is measured as the difference between gross photosynthesis (the total amount of carbon fixed by the plant per unit time) and the respiration (the total amount of carbon lost metabolically during that same time)." [Gramene:pankaj_jaiswal]
is_a: TO:0000283 ! biological process trait

[Term]
id: TO:0001028
name: osmotic adjustment break point
def: "Break point of leaf water potential in the regression of leaf water potential against leaf relative water content." [CIRAD:Brigitte_Courtois]
synonym: "Break point of osmotic adjustment (related)" RELATED []
is_a: TO:0000237 ! water stress response trait

[Term]
id: TO:0001029
name: relative harvest index
def: "It is a ratio of harvest index in stress to that of control environment." [Gramene:pankaj_jaiswal]
is_a: TO:0000128 ! harvest index

[Term]
id: TO:0001030
name: relative leaf area
def: "It is a ratio of leaf area determined from a stressed plant to that grown in normal environment." [Gramene:pankaj_jaiswal]
is_a: TO:0000540 ! leaf area trait

[Term]
id: TO:0001031
name: relative leaf dry weight
def: "It is a ratio of leaf dry weight determined from a stressed plant to that grown in normal environment." [Gramene:pankaj_jaiswal]
is_a: TO:0001014 ! leaf dry weight

[Term]
id: TO:0001032
name: relative panicle number
def: "A panicle number (TO:0000152) trait which is the ratio of panicle number determined from a stressed plant to that grown in normal environment." [Gramene:pankaj_jaiswal, TO:moorel]
is_a: TO:0000152 ! panicle number

[Term]
id: TO:0001033
name: relative spikelet number
def: "It is a ratio of spikelet number per panicle/inflorescence determined from a stressed plant to that grown in normal environment." [Gramene:pankaj_jaiswal]
synonym: "relative number of spikelet per panicle (related)" RELATED []
is_a: TO:0000456 ! spikelet number

[Term]
id: TO:0001034
name: relative plant height
def: "It is a ratio of the plant height determined from a stressed plant to that grown in normal environment." [Gramene:pankaj_jaiswal]
is_a: TO:0000207 ! plant height

[Term]
id: TO:0001035
name: stem width
def: "A stem morphology trait (TO:0000361) which is the width of a stem (PO:0009047)." [Gramene:cwt, PO:0009047, TO:moorel]
comment: Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
synonym: "culm diameter (related)" RELATED []
synonym: "culm width (related)" RELATED []
xref: PATO:0000921
is_a: TO:0000361 ! stem morphology trait
relationship: part_of TO:0000892 ! stem size

[Term]
id: TO:0001036
name: OBSOLETE stem senescence
def: "OBSOLETE." []
comment: Please refer to stem senescence (TO:0020085)." [Gramene:cwt, TO:moorel]
synonym: "culm senescence (related)" RELATED []
is_obsolete: true

[Term]
id: TO:0001041
name: root yield
def: "A yield trait (TO:0000371) which is the yield of roots (PO:0009005)." [TO:Laurel_Cooper]
is_a: TO:0000371 ! yield trait
created_by: cooperl

[Term]
id: TO:0001042
name: root quality trait
def: "A plant quality trait (TO:0000597) which is the quality of roots (PO:0009005)." [TO:Laurel_Cooper]
is_a: TO:0000597 ! plant quality trait
created_by: cooperl

[Term]
id: TO:0001043
name: barium content trait
def: "A mineral and ion content trait (TO:0000465) which is the barium cation (CHEBI:39125) composition in a plant structure (PO:0009011)." [TO:Laurel_Cooper]
synonym: "Ba content (exact)" EXACT []
xref: TO_GIT:412
is_a: TO:0000465 ! mineral and ion content trait

[Term]
id: TO:0001044
name: cobalt content trait
def: "A mineral and ion content trait (TO:0000465) which is the cobalt cation (CHEBI:23336) composition in a plant structure (PO:0009011)." [TO:Laurel_Cooper]
synonym: "Co content (exact)" EXACT []
xref: TO_GIT:412
is_a: TO:0000465 ! mineral and ion content trait

[Term]
id: TO:0001045
name: chromium content trait
def: "A mineral and ion content trait (TO:0000465) which is the chromium cation (CHEBI:33516) composition in a plant structure (PO:0009011)." [TO:Laurel_Cooper]
synonym: "Cr content (exact)" EXACT []
xref: TO_GIT:412
is_a: TO:0000465 ! mineral and ion content trait

[Term]
id: TO:0001046
name: iodine content trait
def: "A mineral and ion content trait (TO:0000465) which is the iodine cation (CHEBI:33116) composition in a plant structure (PO:0009011)." [TO:Laurel_Cooper]
synonym: "I content (exact)" EXACT []
xref: TO_GIT:412
is_a: TO:0000465 ! mineral and ion content trait

[Term]
id: TO:0001047
name: lead content trait
def: "A mineral and ion content trait (TO:0000465) which is the lead cation (CHEBI:30180) composition in a plant structure (PO:0009011)." [TO:Laurel_Cooper]
synonym: "Pb content (exact)" EXACT []
xref: TO_GIT:412
is_a: TO:0000465 ! mineral and ion content trait

[Term]
id: TO:0001048
name: silicon content trait
def: "A mineral and ion content trait (TO:0000465) which is the silicon cation (CHEBI:30584) composition in a plant structure (PO:0009011)." [TO:Laurel_Cooper]
synonym: "Si content (exact)" EXACT []
xref: TO_GIT:412
is_a: TO:0000465 ! mineral and ion content trait

[Term]
id: TO:0001049
name: rubidium content trait
def: "A mineral and ion content trait (TO:0000465) which is the rubidium cation (CHEBI:49847) composition in a plant structure (PO:0009011)." [TO:Laurel_Cooper]
synonym: "Rb content (exact)" EXACT []
xref: TO_GIT:412
is_a: TO:0000465 ! mineral and ion content trait

[Term]
id: TO:0001050
name: strontium content trait
def: "A mineral and ion content trait (TO:0000465) which is the strontium ion (CHEBI:39130) composition in a plant structure (PO:0009011)." [TO:Laurel_Cooper]
synonym: "Sr content (exact)" EXACT []
xref: TO_GIT:412
is_a: TO:0000465 ! mineral and ion content trait

[Term]
id: TO:0001051
name: root hair density
def: "A root morphology trait (TO:0000043) which is the number of root hairs (GO:0035618) in a given surface area of a root (PO:0009005)." [PMID:27294384, TO:Laurel_Cooper]
xref: TO_GIT:417
is_a: TO:0000043 ! root morphology trait
creation_date: 2017-07-14T10:36:57Z

[Term]
id: TO:0001052
name: root cortex cross-sectional area
def: "A portion of plant tissue morphology trait (TO:0000843) which is the cross-sectional area of the root cortex (PO:0000258)." [PMID:27294384, TO:Laurel_Cooper]
xref: TO_GIT:417
is_a: TO:0000843 ! portion of plant tissue morphology trait
creation_date: 2017-07-14T10:36:57Z

[Term]
id: TO:0001053
name: subterranean shoot axis tuber length
def: "A subterranean shoot axis tuber morphology trait (TO:0000742) which is the length of a subterranean shoot axis tuber (PO:0004547)." [TO:Laurel_Cooper]
comment: Refers to length (PATO:0000122).
xref: TO_GIT:56
is_a: TO:0000742 ! subterranean shoot axis tuber morphology trait
relationship: part_of TO:0000744 ! subterranean shoot axis tuber size
creation_date: 2017-11-29T10:36:57Z

[Term]
id: TO:0001054
name: root stele cross-sectional area
def: "A cardinal organ part morphology trait (TO:0000754) which is the cross-sectional area of the root stele (PO:0020124)." [PMID:27294384, TO:Laurel_Cooper]
xref: TO_GIT:417
is_a: TO:0000754 ! cardinal organ part morphology trait
creation_date: 2017-07-14T10:36:57Z

[Term]
id: TO:0001055
name: root aerenchyma cross-sectional area
def: "A portion of plant tissue morphology trait (TO:0000843) which is the cross-sectional area of the root aerenchyma (PO:0006213)." [PMID:27294384, TO:Laurel_Cooper]
xref: TO_GIT:417
is_a: TO:0000843 ! portion of plant tissue morphology trait
creation_date: 2017-07-14T10:36:57Z

[Term]
id: TO:0001056
name: root cross sectional area
def: "A root morphology trait (TO:0000043) which is the cross sectional area of a root (PO:0009005)." [PMID:21454799, TO:Laurel_Cooper]
xref: TO_GIT:417
is_a: TO:0000043 ! root morphology trait
creation_date: 2017-07-14T10:36:57Z

[Term]
id: TO:0001057
name: root system width
def: "A root system morphology trait (TO:0000985) which is the width of the root system (PO:0025025)." [PMID:21454799, TO:Laurel_Cooper]
xref: TO_GIT:417
is_a: TO:0000985 ! root system morphology trait
creation_date: 2017-07-10T10:36:57Z

[Term]
id: TO:0001058
name: root system depth
def: "A root system morphology trait (TO:0000985) which is the depth of the root system (PO:0025025)." [PMID:21454799, TO:Laurel_Cooper]
xref: TO_GIT:417
is_a: TO:0000985 ! root system morphology trait
creation_date: 2017-07-14T10:36:57Z

[Term]
id: TO:0001059
name: root system width to depth ratio
def: "A root system morphology trait (TO:0000985) which is the ratio of the root system width (TO:0001057) to root system depth (TO:0001058)." [PMID:21454799, TO:Laurel_Cooper]
xref: TO_GIT:417
is_a: TO:0000985 ! root system morphology trait
creation_date: 2017-07-14T10:36:57Z

[Term]
id: TO:0001060
name: subterranean shoot axis tuber width
def: "A subterranean shoot axis tuber morphology trait (TO:0000742) which is the width of a subterranean shoot axis tuber (PO:0004547)." [TO:Laurel_Cooper]
comment: Refers to width (PATO:0000921).
xref: TO_GIT:56
is_a: TO:0000742 ! subterranean shoot axis tuber morphology trait
relationship: part_of TO:0000744 ! subterranean shoot axis tuber size
creation_date: 2017-11-30T00:04:18Z

[Term]
id: TO:0001061
name: inflorescence axis thickness
def: "An inflorescence axis morphology trait (TO:0000782) which is the thickness of an inflorescence axis (PO:0020122)." [PMID:26841834, TO:Laurel_Cooper]
synonym: "rachis thickness (exact)" EXACT []
xref: TO_GIT:419
is_a: TO:0000782 ! inflorescence axis morphology trait
creation_date: 2018-01-30T23:50:51Z

[Term]
id: TO:0001062
name: number of panicle internodes
def: "A panicle inflorescence morphology trait (TO:0000847) which is the number of inflorescence axis internodes (PO:0006326) in a panicle inflorescence (PO:0030123)." [PMID:26841834, TO:Laurel_Cooper]
xref: TO_GIT:419
is_a: TO:0000847 ! panicle inflorescence morphology trait
creation_date: 2018-01-31T00:33:37Z

[Term]
id: TO:0001063
name: panicle inflorescence internode length
def: "A panicle inflorescence morphology trait (TO:0000847) which is the length of the inflorescence axis internodes (PO:0006326) in a panicle inflorescence (PO:0030123)." [PMID:26841834, TO:Laurel_Cooper]
xref: TO_GIT:419
is_a: TO:0000847 ! panicle inflorescence morphology trait
creation_date: 2018-01-31T00:43:58Z

[Term]
id: TO:0001064
name: number of panicle inflorescence branches per internode
def: "A panicle inflorescence morphology trait (TO:0000847) which is the average number of branches per inflorescence axis internode (PO:0006326) in a panicle inflorescence (PO:0030123)." [PMID:26841834, TO:Laurel_Cooper]
xref: TO_GIT:419
is_a: TO:0000847 ! panicle inflorescence morphology trait
creation_date: 2018-01-31T23:29:53Z

[Term]
id: TO:0001065
name: panicle inflorescence terminal primary branch length
def: "A panicle inflorescence morphology trait (TO:0000847) which is the length of a terminal primary branch in a panicle inflorescence (PO:0030123)." []
xref: TO_GIT:419
is_a: TO:0000847 ! panicle inflorescence morphology trait
creation_date: 2018-01-31T23:36:03Z

[Term]
id: TO:0001066
name: number of metaxylem vessels
def: "A vascular tissue morphology trait (TO_0000470) which is the number of metaxylem vessels (PO:0025620)." [PMID:1186185, TO:Laurel_Cooper]
comment: The number of metaxylem vessels (PO:0025620) may be counted in a cross section of a primary xylem (PO:0005849).
xref: TO_GIT:421
is_a: TO:0000470 ! vascular tissue morphology trait
creation_date: 2017-08-17T21:15:56Z

[Term]
id: TO:0001067
name: days to booting
def: "A flowering time trait (TO:0002616) which is the length of time for a plant or group of plants to reach booting stage (PO:0007014)." [PMID:26841834, TO:Laurel_Cooper]
xref: TO_GIT:420
is_a: TO:0002616 ! flowering time trait
creation_date: 2018-02-01T19:15:02Z

[Term]
id: TO:0001068
name: processing quality trait
def: "A plant quality trait (TO:0000597) that is the utility of a plant, plant structure (PO:0009011) or plant product for post-harvest chemical, biological or mechanical transformation into a desired end product." [TO:Laurel_Cooper]
xref: TO_GIT:426
is_a: TO:0000597 ! plant quality trait
created_by: Laurel_Cooper
creation_date: 2017-12-07T10:36:57Z

[Term]
id: TO:0001069
name: cooking quality trait
def: "A processing quality trait (TO:0001068) that is the utility of a plant, plant structure (PO:0009011) or plant product for a food cooking process (FOODON:03450002)." [FOODON:03450002, TO:Laurel_Cooper]
is_a: TO:0001068 ! processing quality trait
creation_date: 2017-12-08T00:41:11Z

[Term]
id: TO:0001070
name: brewing quality trait
def: "A processing quality trait (TO:0001068) that is the utility of a plant, plant structure (PO:0009011) or plant product for post-harvest brewing of fermented endproducts." [TO:Laurel_Cooper]
is_a: TO:0001068 ! processing quality trait
creation_date: 2017-12-08T00:41:25Z

[Term]
id: TO:0001071
name: shoot axis tuber yield
def: "A shoot system yield trait (TO:0000327) which is the yield of shoot axis tubers (PO:0004543)." [TO:Laurel_Cooper]
comment: Use for tuber yields of yams (Dioscorea spp.) and potatoes (Solanum spp.).
is_a: TO:0000327 ! shoot system yield trait
creation_date: 2017-12-20T23:14:07Z

[Term]
id: TO:0001072
name: inflorescence axis length
def: "An inflorescence axis morphology trait (TO:0000782) which is the length of an inflorescence axis (PO:0020122)." [PMID:26841834, TO:Laurel_Cooper]
synonym: "rachis length (exact)" EXACT []
synonym: "RACHISLENG (exact)" EXACT []
xref: TO_GIT:407
is_a: TO:0000782 ! inflorescence axis morphology trait
creation_date: 2018-01-31T19:32:32Z

[Term]
id: TO:0001073
name: fruit shattering
def: "A fruit senescing quality trait (TO:0002729) that is the tendency of a fruit (PO:0009001) to dehisce, releasing one or more seed(s) (PO:0009001)." [TO:Laurel_Cooper]
xref: TO_GIT:430
is_a: TO:0002729 ! fruit senescing quality trait
relationship: part_of TO:0000929 ! fruit growth and development trait
created_by: Laurel_Cooper
creation_date: 2018-02-23T19:49:51Z

[Term]
id: TO:0001074
name: legume fruit shattering
def: "A fruit shattering trait (TO:0001073) that is the tendency of a legume fruit (PO:0030100) to dehisce, releasing one or more seed(s) (PO:0009001)." [PMID:27888713, TO:Laurel_Cooper]
synonym: "pod shattering (broad)" BROAD []
xref: TO_GIT:430
is_a: TO:0001073 ! fruit shattering
created_by: Laurel_Cooper
creation_date: 2018-02-23T19:50:20Z

[Term]
id: TO:0001075
name: pulvinus size
def: "A cardinal organ part morphology trait (TO:0000754) which is the size of a pulvinus (PO:0009000)." [TO:Laurel_Cooper]
xref: TO_GIT:429
is_a: TO:0000754 ! cardinal organ part morphology trait
creation_date: 2018-03-01T23:33:59Z

[Term]
id: TO:0001076
name: infructescence development trait
def: "A shoot system growth and development trait (TO:0000654) that is a quality of infructescence (PO:0006342) development." [TO:Laurel_Cooper]
is_a: TO:0000654 ! shoot system growth and development trait
created_by: Laurel_Cooper
creation_date: 2018-03-27T19:37:18Z

[Term]
id: TO:0001077
name: berry fruit morphology trait
def: "A fruit morphology trait (TO:0002629) which is a quality of a berry fruit (PO:0030108)." [TO:Laurel_Cooper]
xref: TO_GIT:437
is_a: TO:0002629 ! fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001078
name: capsule fruit morphology trait
def: "A fruit morphology trait (TO:0002629) which is a quality of a capsule fruit (PO:0030091)." [TO:Laurel_Cooper]
xref: TO_GIT:437
is_a: TO:0002629 ! fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001079
name: caryopsis fruit morphology trait
def: "A fruit morphology trait (TO:0002629) which is a quality of a caryopsis fruit (PO:0030104)." [TO:Laurel_Cooper]
synonym: "grain morphology trait (exact)" EXACT []
synonym: "kernel morphology trait (exact)" EXACT []
xref: TO_GIT:437
is_a: TO:0002629 ! fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001080
name: drupe fruit morphology trait
def: "A fruit morphology trait (TO:0002629) which is a quality of a drupe fruit (PO:0030103)." [TO:Laurel_Cooper]
synonym: "stone fruit morphology trait (exact)" EXACT []
xref: TO_GIT:437
is_a: TO:0002629 ! fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001081
name: follicle fruit morphology trait
def: "A fruit morphology trait (TO:0002629) which is a quality of a follicle fruit (PO:0030105)." [TO:Laurel_Cooper]
xref: TO_GIT:437
is_a: TO:0002629 ! fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001082
name: legume fruit morphology trait
def: "A fruit morphology trait (TO:0002629) which is a quality of a legume fruit (PO:0030100)." [TO:Laurel_Cooper]
synonym: "pod morphology trait (exact)" EXACT []
xref: TO_GIT:437
is_a: TO:0002629 ! fruit morphology trait

[Term]
id: TO:0001083
name: nut fruit morphology trait
def: "A fruit morphology trait (TO:0002629) which is a quality of a nut fruit (PO:0030102)." [TO:Laurel_Cooper]
synonym: "nut morphology trait (exact)" EXACT []
xref: TO_GIT:437
is_a: TO:0002629 ! fruit morphology trait

[Term]
id: TO:0001084
name: samara fruit morphology trait
def: "A fruit morphology trait (TO:0002629) which is a quality of a samara fruit (PO:0030099)." [TO:Laurel_Cooper]
xref: TO_GIT:437
is_a: TO:0002629 ! fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001085
name: schizocarp fruit morphology trait
def: "A fruit morphology trait (TO:0002629) which is a quality of a schizocarp fruit (PO:0030098)." [TO:Laurel_Cooper]
xref: TO_GIT:437
is_a: TO:0002629 ! fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001086
name: silique fruit morphology trait
def: "A fruit morphology trait (TO:0002629) which is a quality of a silique fruit (PO:0030106)." [TO:Laurel_Cooper]
synonym: "silique morphology trait (exact)" EXACT []
xref: TO_GIT:437
is_a: TO:0002629 ! fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001087
name: achene fruit weight
def: "A achene fruit morphology trait (TO:0001097) which is the weight of a achene fruit (PO:0030107)." [TO:Laurel_Cooper]
xref: TO_GIT:437
is_a: TO:0001097 ! achene fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001088
name: berry fruit weight
def: "A berry fruit morphology trait (TO:0001077) which is the weight of a berry fruit (PO:0030108)." [TO:Laurel_Cooper]
is_a: TO:0001077 ! berry fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001089
name: capsule fruit weight
def: "A capsule fruit morphology trait (TO:0001078) which is the weight (PATO:0000128) of a capsule fruit (PO:0030091)." [PATO:0000128, TO:Laurel_Cooper]
is_a: TO:0001078 ! capsule fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001090
name: drupe fruit weight
def: "A drupe fruit morphology trait (TO:0001080) which is the weight of a drupe fruit (PO:0030103)." [TO:Laurel_Cooper]
is_a: TO:0001080 ! drupe fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001091
name: follicle fruit weight
def: "A follicle fruit morphology trait (TO:0001081) which is the weight of a follicle fruit (PO:0030105)." [TO:Laurel_Cooper]
is_a: TO:0001081 ! follicle fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001092
name: legume fruit weight
def: "A legume fruit morphology trait (TO:0001082) which is the weight of a legume fruit (PO:0030100)." [TO:Laurel_Cooper]
synonym: "pod weight (exact)" EXACT []
is_a: TO:0001082 ! legume fruit morphology trait
relationship: part_of TO:0001142 ! legume fruit yield trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001093
name: nut fruit weight
def: "A nut fruit morphology trait (TO:0001083) which is the weight of a nut fruit (PO:0030102)." [TO:Laurel_Cooper]
is_a: TO:0001083 ! nut fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001094
name: samara fruit weight
def: "A samara fruit morphology trait (TO:0001084) which is the weight of a samara fruit (PO:0030099)." [TO:Laurel_Cooper]
is_a: TO:0001084 ! samara fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001095
name: schizocarp fruit weight
def: "A schizocarp fruit morphology trait (TO:0001085) which is the weight of a schizocarp fruit (PO:0030098)." [TO:Laurel_Cooper]
is_a: TO:0001085 ! schizocarp fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001096
name: silique fruit weight
def: "A silique fruit morphology trait (TO:0001086) which is the weight of a silique fruit (PO:0030106)." [TO:Laurel_Cooper]
is_a: TO:0001086 ! silique fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001097
name: achene fruit morphology trait
def: "A fruit morphology trait (TO:0002629) which is a quality of a achene fruit (PO:0030107)." [TO:Laurel_Cooper]
synonym: "accessory fruit morphology trait (narrow)" NARROW []
xref: TO_GIT:437
is_a: TO:0002629 ! fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001098
name: pepo fruit morphology trait
def: "A berry fruit morphology trait (TO:0001077) which is a quality of a pepo fruit (PO:0030111)." [TO:Laurel_Cooper]
synonym: "pepo morphology trait (exact)" EXACT []
xref: TO_GIT:437
is_a: TO:0001077 ! berry fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001099
name: pome fruit morphology trait
def: "A berry fruit morphology trait (TO:0001077) which is a quality of a pome fruit (PO:0030110)." [TO:Laurel_Cooper]
xref: TO_GIT:437
is_a: TO:0001077 ! berry fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001100
name: circumscissile capsule fruit morphology trait
def: "A capsule fruit morphology trait (TO:0001078) which is a quality of a circumscissile capsule fruit (PO:0030096)." [TO:Laurel_Cooper]
is_a: TO:0001078 ! capsule fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001101
name: utricle capsule fruit morphology trait
def: "A circumscissile capsule morphology trait (TO:0001100) which is a quality of a utricle capsule fruit (PO:0030097)." [TO:Laurel_Cooper]
is_a: TO:0001100 ! circumscissile capsule fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001102
name: coccarium capsule fruit morphology trait
def: "A capsule fruit morphology trait (TO:0001078) which is a quality of a coccarium capsule fruit (PO:0030094)." [TO:Laurel_Cooper]
is_a: TO:0001078 ! capsule fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001103
name: loculicidal capsule fruit morphology trait
def: "A capsule fruit morphology trait (TO:0001078) which is a quality of a loculicidal capsule fruit (PO:0030092)." [TO:Laurel_Cooper]
is_a: TO:0001078 ! capsule fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001104
name: poricidal capsule fruit morphology trait
def: "A capsule fruit morphology trait (TO:0001078) which is a quality of a poricidal capsule fruit (PO:0030095)." [TO:Laurel_Cooper]
is_a: TO:0001078 ! capsule fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001105
name: septicidal capsule fruit morphology trait
def: "A capsule fruit morphology trait (TO:0001078) which is a quality of a septicidal capsule fruit (PO:0030093)." [TO:Laurel_Cooper]
is_a: TO:0001078 ! capsule fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001106
name: loment fruit morphology trait
def: "A legume fruit morphology trait (TO:0001082) which is a quality of a loment fruit (PO:0030101)." [TO:Laurel_Cooper]
is_a: TO:0001082 ! legume fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001107
name: hesperidium fruit morphology trait
def: "A berry fruit morphology trait (TO:0001077) which is a quality of a hesperidium fruit (PO:0030109)." [TO:Laurel_Cooper]
synonym: "citrus fruit morphology trait (exact)" EXACT []
xref: TO_GIT:437
is_a: TO:0001077 ! berry fruit morphology trait
created_by: Laurel_Cooper
creation_date: 2018-09-26T19:37:18Z

[Term]
id: TO:0001108
name: grain volume
def: "A caryopsis fruit morphology trait (TO:0001079) which is the volume of a grain (caryopsis fruit; PO:0030104)." [TO:Laurel_Cooper]
synonym: "GRVOL (exact)" EXACT []
synonym: "kernel volume (exact)" EXACT []
is_a: TO:0001079 ! caryopsis fruit morphology trait

[Term]
id: TO:0001109
name: grain color trait
def: "A caryopsis fruit morphology trait (TO:0001079) which is the color of a grain (caryopsis fruit; PO:0030104)." [TO:Laurel_Cooper]
synonym: "kernel color (related)" RELATED []
is_a: TO:0001079 ! caryopsis fruit morphology trait
property_value: http://purl.org/dc/elements/1.1/date "2019-02-18T19:27:51Z" xsd:dateTime

[Term]
id: TO:0001110
name: spike inflorescence morphology trait
def: "An inflorescence morphology trait (TO:0000373) which is a quality of a spike inflorescence (PO:0030117)." [TO:Laurel_Cooper]
is_a: TO:0000373 ! inflorescence morphology trait
created_by: cooperl
creation_date: 2019-09-19T21:16:45Z

[Term]
id: TO:0001111
name: Heterodera glycines response
def: "A nematode damage response (TO:0000384) to the Soybean cyst nematode (Heterodera glycines)." [TO:Laurel_Cooper]
comment: Refers to soybean cyst nematode (Heterodera glycines; NCBITaxon:51029).
xref: TO_GIT:461
is_a: TO:0000384 ! nematode damage response trait
created_by: cooperl

[Term]
id: TO:0001112
name: root width
def: "A root morphology trait (TO:0000043) which is the width of a root (PO:0009005)." [PATO:0000921, PO:0009005, TO:Laurel_Cooper]
is_a: TO:0000043 ! root morphology trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2022-05-11

[Term]
id: TO:0001113
name: leaflet morphology trait
def: "A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaflet (PO:0020049)." [TO:Laurel_Cooper]
xref: TO_GIT:118
xref: TO_GIT:411
xref: TO_GIT:83
is_a: TO:0000754 ! cardinal organ part morphology trait
created_by: http://orcid.org/0000-0002-6379-8932
creation_date: 2023-01-09T19:26:13Z

[Term]
id: TO:0001114
name: leaflet area
def: "A leaflet morphology trait (TO:0001113) which is the area (PATO:0001323) of a leaflet (PO:0020049)." [TO:Laurel_Cooper]
xref: TO_GIT:216
is_a: TO:0001113 ! leaflet morphology trait
relationship: part_of TO:0001119 ! leaflet size
created_by: http://orcid.org/0000-0002-6379-8932
creation_date: 2023-01-09T19:37:44Z

[Term]
id: TO:0001115
name: leaflet length
def: "A leaflet morphology trait (TO:0001113) which is the length (PATO:0000122 ) of a leaflet (PO:0020049)." [TO:Laurel_Cooper]
xref: TO_GIT:216
is_a: TO:0001113 ! leaflet morphology trait
relationship: part_of TO:0001119 ! leaflet size
created_by: http://orcid.org/0000-0002-6379-8932
creation_date: 2023-01-09T19:40:14Z

[Term]
id: TO:0001116
name: leaflet shape
def: "A leaflet morphology trait (TO:0001113) which is the shape (PATO:0000052) of a leaflet (PO:0020049)." [TO:Laurel_Cooper]
xref: TO_GIT:411
xref: TO_GIT:83
is_a: TO:0001113 ! leaflet morphology trait
created_by: http://orcid.org/0000-0002-6379-8932
creation_date: 2023-01-09T21:54:09Z

[Term]
id: TO:0001117
name: leaflet weight
def: "A leaflet morphology trait (TO:0001113) which is the weight (PATO:0000128 ) of a leaflet (PO:0020049)." [TO:Laurel_Cooper]
is_a: TO:0001113 ! leaflet morphology trait
created_by: http://orcid.org/0000-0002-6379-8932
creation_date: 2023-01-09T21:56:45Z

[Term]
id: TO:0001118
name: leaflet width
def: "A leaflet morphology trait (TO:0001113) which is the width (PATO:0000921) of a leaflet (PO:0020049)." [TO:Laurel_Cooper]
xref: TO_GIT:118
xref: TO_GIT:216
is_a: TO:0001113 ! leaflet morphology trait
relationship: part_of TO:0001119 ! leaflet size
created_by: http://orcid.org/0000-0002-6379-8932
creation_date: 2023-01-09T22:01:05Z

[Term]
id: TO:0001119
name: leaflet size
def: "A leaflet morphology trait (TO:0001113) which is the size (PATO:0000117 ) of a leaflet (PO:0020049)." [TO:Laurel_Cooper]
xref: TO_GIT:411
is_a: TO:0001113 ! leaflet morphology trait
created_by: http://orcid.org/0000-0002-6379-8932
creation_date: 2023-01-09T22:02:40Z

[Term]
id: TO:0001120
name: specific leaflet weight
def: "A leaflet weight (TO:0001117) which is the ratio of leaflet weight to leaflet area (TO:0001114)." [TO:Laurel_Cooper]
synonym: "leaflet specific weight (exact)" EXACT []
xref: TO_GIT:231
is_a: TO:0001117 ! leaflet weight
created_by: http://orcid.org/0000-0002-6379-8932
creation_date: 2023-01-09T22:50:17Z

[Term]
id: TO:0001121
name: compound leaf morphology trait
def: "A vascular leaf morphology trait (TO:0000419) which is a quality of a compound leaf (PO:0020043)." [TO:Laurel_Cooper]
xref: TO_GIT:215
is_a: TO:0000419 ! vascular leaf morphology trait
created_by: http://orcid.org/0000-0002-6379-8932
creation_date: 2023-01-09T22:29:37Z

[Term]
id: TO:0001122
name: specific leaf weight
def: "A leaf weight (TO:0000505) which is the ratio of leaf weight to leaf area (TO:0000540)." [TO:Laurel_Cooper]
xref: TO_GIT:231
is_a: TO:0000505 ! leaf weight
created_by: http://orcid.org/0000-0002-6379-8932
creation_date: 2023-01-09T22:55:35Z

[Term]
id: TO:0001123
name: specific leaflet area
def: "A leaflet area trait (TO:0001114) that is the ratio of the leaflet area to the leaflet weight (TO:0001117)." [TO:Laurel_Cooper]
xref: TO_GIT:491
is_a: TO:0001114 ! leaflet area
created_by: http://orcid.org/0000-0002-6379-8932
creation_date: 2023-01-09T23:16:39Z

[Term]
id: TO:0001124
name: root phosphorus content
def: "A phosphorus content trait (TO:0001024) which is the phosphorus cation (CHEBI:33467) composition in a root (PO:0009005)." [TO:Laurel_Cooper]
xref: TO-GIT:412
is_a: TO:0001024 ! phosphorus content
relationship: part_of TO:1000043 ! root system phosphorus content
created_by: http://orcid.org/0000-0002-6379-8932
creation_date: 2023-02-09T23:35:29Z

[Term]
id: TO:0001125
name: pod number trait
def: "A fruit number trait (TO:0000894) which is the number of legume fruits (PO:0030100), or pods." [TO:Laurel_Cooper]
synonym: "legume fruit number (exact)" EXACT []
xref: TO_GIT:493
xref: TO_GIT:65
xref: TO_GIT:77
is_a: TO:0000894 ! fruit number trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-02-15T22:44:13Z

[Term]
id: TO:0001126
name: bulb morphology trait
def: "A shoot system morphology trait (TO:0000077) which is a quality of a bulb (PO:0025356)." [TO:Laurel_Cooper]
xref: TO_GIT:503
is_a: TO:0000077 ! shoot system morphology trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-02-28T22:17:58Z

[Term]
id: TO:0001127
name: bulb diameter
def: "A bulb morphology trait (TO:0001126) which is the diameter (PATO:0001334) of a bulb (PO:0025356)." [PATO:0001334, TO:Laurel_Cooper]
xref: TO_GIT:503
is_a: TO:0001126 ! bulb morphology trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-02-28T22:17:58Z

[Term]
id: TO:0001128
name: bulb height
def: "A bulb morphology trait (TO:0001126) which is the height (PATO:0000119) of a bulb (PO:0025356)." [PATO:0000119, TO:Laurel_Cooper]
synonym: "bulb vertical diameter (exact)" EXACT []
xref: TO_GIT:503
is_a: TO:0001126 ! bulb morphology trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-02-28T22:44:13Z

[Term]
id: TO:0001129
name: bulb width
def: "A bulb morphology trait (TO:0001126) which is the width (PATO:0000921) of a bulb (PO:0025356)." [PATO:0000921, TO:Laurel_Cooper]
synonym: "Bulb horizontal diameter (exact)" EXACT []
xref: TO_GIT:503
is_a: TO:0001126 ! bulb morphology trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-02-28T22:46:33Z

[Term]
id: TO:0001130
name: bulb color
def: "A bulb morphology trait (TO:0001126) which is the color (PATO:0000014) of a bulb (PO:0025356)." [PATO:0000014, TO:Laurel_Cooper]
xref: TO_GIT:503
is_a: TO:0001126 ! bulb morphology trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-02-28T22:50:16Z

[Term]
id: TO:0001131
name: capsule fruit width
def: "A capsule fruit morphology trait (TO:0001078) which is the width (PATO:0000921) of a capsule fruit (PO:0030091)." [PATO:0000921, TO:Laurel_Cooper]
synonym: "capsule width (exact)" EXACT []
xref: TO_GIT:498
is_a: TO:0001078 ! capsule fruit morphology trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-02-28T23:10:08Z

[Term]
id: TO:0001132
name: capsule fruit length
def: "A capsule fruit morphology trait (TO:0001078) which is the length (PATO:0000122) of a capsule fruit (PO:0030091)." [PATO:0000122, TO:Laurel_Cooper]
synonym: "capsule length (exact)" EXACT []
xref: TO_GIT:497
is_a: TO:0001078 ! capsule fruit morphology trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-02-28T23:16:34Z

[Term]
id: TO:0001133
name: capsule fruit thickness
def: "A capsule fruit morphology trait (TO:0001078) which is the thickness (PATO:0000915) of a capsule fruit (PO:0030091)." [PATO:0000915, TO:Laurel_Cooper]
synonym: "capsule thickness (exact)" EXACT []
xref: TO_GIT:499
is_a: TO:0001078 ! capsule fruit morphology trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-02-28T23:30:24Z

[Term]
id: TO:0001134
name: capsule seed number
def: "A fruit seed number (TO:0000445) which is the number of seeds in a capsule fruit (PO:0030091)." [TO:Laurel_Cooper]
synonym: "seeds per capsule (exact)" EXACT []
xref: TO_GIT:501
is_a: TO:0000445 ! fruit seed number
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-02-28T23:41:19Z

[Term]
id: TO:0001135
name: capsule fruit number
def: "A fruit number trait (TO:0000894) which is the number of capsule fruit (PO:0030091)." [TO:Laurel_Cooper]
synonym: "number of capsule fruits per plant (narrow)" NARROW []
xref: TO_GIT:500
is_a: TO:0000894 ! fruit number trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-02-28T23:44:27Z

[Term]
id: TO:0001136
name: grain protein content
def: "A protein content trait (TO:0000598) which is the amount of protein (CHEBI:36080) in a caryopsis fruit (PO:0030104)." [TO:Laurel_Cooper]
synonym: "kernel protein content (related)" RELATED []
xref: TO_GIT:278
is_a: TO:0000598 ! protein content
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-03-08T00:47:52Z

[Term]
id: TO:0001137
name: leaflet margin morphology
def: "A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaflet margin (PO:0006034)." [TO:Laurel_Cooper]
is_a: TO:0000754 ! cardinal organ part morphology trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-05-30T21:33:17Z

[Term]
id: TO:0001138
name: leaflet color
def: "A leaflet morphology trait (TO:0001113) which is the color of a leaflet (PO:0020049)." [PATO:0000014, TO:Laurel_Cooper]
comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
is_a: TO:0001113 ! leaflet morphology trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-05-30T21:40:48Z

[Term]
id: TO:0001139
name: leaflet pubescence
def: "A leaflet morphology trait (TO:0001113) which is the extent of pubescence (presence of trichomes (PO:0000282)) on a leaflet (PO:0020049)." [PATO:0001320, TO:Laurel_Cooper]
comment: Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down.
is_a: TO:0001113 ! leaflet morphology trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-05-30T21:46:00Z

[Term]
id: TO:0001140
name: leaflet chlorophyll content
def: "A chlorophyll content trait (TO:0000495) which is the chlorophyll content of a leaflet (PO:0020049)." [TO:Laurel_Cooper]
is_a: TO:0000495 ! chlorophyll content
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-05-30T21:49:37Z

[Term]
id: TO:0001141
name: rodent damage response trait
def: "An animal damage response trait (TO:0000054) which is the response to damage to a plant structure (PO:0009011) caused by a rodent (NCBITaxon:314147)." [NCBITaxon:314147, PO:0009011, TO:Laurel_Cooper]
comment: Rodents includes rats, mice, rabbits, gophers, beavers, etc.
is_a: TO:0000054 ! animal damage response trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-07-07T22:15:20Z

[Term]
id: TO:0001142
name: legume fruit yield trait
def: "A fruit yield trait (TO:0000871) which is the amount of legume fruit (PO:0030100) produced." [PO:0030100, TO:Laurel_Cooper]
comment: The yield of pods or legume fruits is often measured in weight per unit area of land.
synonym: "pod yield (exact)" EXACT []
xref: TO_GIT:495
is_a: TO:0000871 ! fruit yield trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-07-17T17:24:36Z

[Term]
id: TO:0001143
name: antioxidant activity trait
def: "A biochemical trait (TO:0000277) which is the response to an antioxidant (CHEBI:22586)." [TO:Laurel_Cooper]
is_a: TO:0000277 ! biochemical trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-10-17T20:57:28Z

[Term]
id: TO:0001144
name: Oomycete disease response
def: "A microbial disease response (TO:0000112) trait which is the response to damage to a plant structure (PO:0009011) caused by an infection by a Oomycete pathogen." [https://www.apsnet.org/edcenter/disandpath/oomycete/introduction/Pages/IntroOomycetes.aspx, NCBITaxon:2038151, TO:Laurel_Cooper]
comment: Oomycetes are fungus-like organisms which include the pathogen species of the genera Achlya, Peronospora, Phytopthora, Pseudoperonospora, Pythium, Sclerophthora and others.  These are the causal agents for Downy Mildew and Late Blight diseases, among others.
is_a: TO:0000112 ! microbial disease response
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-11-21T21:56:10Z

[Term]
id: TO:0001145
name: Ascomycete fungal disease response
def: "A fungal disease response trait (TO:0000439) which is caused by infection by an Asomycete fungal species or combination of species." [NCBITaxon:4890, TO:Laurel_Cooper]
is_a: TO:0000439 ! fungal disease response
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-12-05T21:40:01Z

[Term]
id: TO:0001146
name: Basidiomycete fungal disease response
def: "A fungal disease response trait (TO:0000439) which is caused by infection by a Basidiomycete fungal species or combination of species." [NCBITaxon:5204, TO:Laurel_Cooper]
is_a: TO:0000439 ! fungal disease response
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2023-12-05T21:46:29Z

[Term]
id: TO:0001147
name: Fusarium solani disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Fusarium solani." [NCBITaxon:169388, TO:Laurel_Cooper]
xref: TO_GIT:466
is_a: TO:0001145 ! Ascomycete fungal disease response

[Term]
id: TO:0001148
name: neutral detergent fiber content
def: "A fiber content trait (TO:0002642) which is the percentage of cellulose, hemicellulose and lignin fiber in a feed or forage." [DOI:10.1186/s12870-018-1368-4, INRAE:bimbert, TO:Laurel_Cooper, Wikipedia:neutral_detergent_fiber]
comment: The process of determining NDF content involves a neutral detergent that dissolves plant pectins, proteins, sugars and lipids. This leaves behind the fibrous parts such as cellulose, lignin and hemicellulose. (REF: Wikipedia)
synonym: "NDF (related)" RELATED []
is_a: TO:0002642 ! fiber content trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2024-05-03T22:51:46Z

[Term]
id: TO:0001149
name: seed coat dimpled
def: "A seed coat texture (TO:0000903) characterized by shallow, wide depressions on the seed surface, distinctly separated by smooth areas." [DOI:10.1017/S0021859600009758, DOI:10.1186/s12870-018-1368-4, INRAE:bimbert, TO:Laurel_Cooper]
is_a: TO:0000903 ! seed coat texture
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2024-05-03T23:15:46Z

[Term]
id: TO:0001150
name: chilling stress response
def: "A low temperature stress response (TO:0000303) which is the response of a plant structure (PO:0009011) to temperatures less than optimal for growth, but not below freezing." [INRAE:bimbert, TO:Laurel_Cooper]
is_a: TO:0000303 ! low temperature stress response

[Term]
id: TO:0001151
name: freezing stress response
def: "A low temperature stress response (TO:0000303) which is the response of a plant structure (PO:0009011) to temperatures below freezing." [INRAE:bimbert, TO:Laurel_Cooper]
is_a: TO:0000303 ! low temperature stress response

[Term]
id: TO:0001152
name: frost damage stress response
def: "A freezing stress response trait (TO:0001151) which is the response to damage to a plant structure (PO:0009011) caused by freezing temperatures." [INRAE:bimbert, TO:Laurel_Cooper]
comment: Damage from freezing temperatures occurs when ice forms inside the plant tissues and injures plant cells.
is_a: TO:0001151 ! freezing stress response

[Term]
id: TO:0001153
name: survival rate after freezing temperature stress
def: "A freezing stress response trait (TO:0001151) which is the percentage of plants that survive freezing temperature exposure." []
is_a: TO:0001151 ! freezing stress response

[Term]
id: TO:0001154
name: peanut early leaf spot disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Mycosphaerella arachidis." [DOI:10.1111/pbi.12930, NCBITaxon:143450, TO:Laurel_Cooper]
synonym: "ELS (exact)" EXACT []
xref: TO_GIT:469
is_a: TO:0001145 ! Ascomycete fungal disease response

[Term]
id: TO:0001155
name: peanut late leaf spot disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Nothopassalora personata." [DOI:10.1111/pbi.12930, NCBITaxon:2060155, TO:Laurel_Cooper]
synonym: "LLS (exact)" EXACT []
xref: TO_GIT:468
is_a: TO:0001145 ! Ascomycete fungal disease response

[Term]
id: TO:0001156
name: tomato spotted wilt virus response
def: "A viral disease response trait (TO:0000148) caused by tomato spotted wilt virus." [DOI:10.1111/pbi.12930, NCBITaxon:3052585, TO:Laurel_Cooper]
synonym: "TSWV (exact)" EXACT []
xref: TO_GIT:467
is_a: TO:0000148 ! viral disease response trait

[Term]
id: TO:0001157
name: seed moisture content
def: "A moisture content trait (TO:0000228) which is the amount of moisture in a seed (PO:0009010)." [TO:Laurel_Cooper]
is_a: TO:0000228 ! moisture content trait
relationship: part_of TO:0000931 ! seed quality trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2025-07-07T20:33:29Z

[Term]
id: TO:0001158
name: shoot axis length
def: "A shoot axis morphology trait (TO:0000739) which is the length in a shoot axis (PO:0025029)." [TO:Laurel_Cooper]
is_a: TO:0000739 ! shoot axis morphology trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2025-07-08T18:39:43Z

[Term]
id: TO:0001159
name: grain dormancy
def: "A fruit growth and development trait (TO:0000929) where a grain (caryopsis fruit; PO:0030104) remains in a state of quiescence or dormancy (GO:0022611)." [TO:Laurel_Cooper]
is_a: TO:0000929 ! fruit growth and development trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2025-07-14T21:14:16Z

[Term]
id: TO:0001160
name: Coleoptera damage response trait
def: "An insect damage response trait (TO:0000261) which is caused by insects of the order Coleoptera (beetles, weevils, etc)." [NCBITaxon:7041, TO:Laurel_Cooper]
is_a: TO:0000261 ! insect damage response trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2025-07-28T18:02:34Z

[Term]
id: TO:0001161
name: Hymenoptera damage response trait
def: "An insect damage response trait (TO:0000261) which is caused by insects of the order Hymenoptera (wasps, bees, ants and sawflies)." [NCBITaxon:7399, TO:Laurel_Cooper]
is_a: TO:0000261 ! insect damage response trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2025-07-28T18:08:37Z

[Term]
id: TO:0001162
name: Lepidoptera damage response trait
def: "An insect damage response trait (TO:0000261) which is caused by insects of the order Lepidoptera (butterflies and moths, etc)." [NCBITaxon:7088, TO:Laurel_Cooper]
is_a: TO:0000261 ! insect damage response trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2025-07-28T18:11:20Z

[Term]
id: TO:0001163
name: Diptera damage response trait
def: "An insect damage response trait (TO:0000261) which is caused by insects of the order Diptera (flies, midges, etc)." [NCBITaxon:7147, TO:Laurel_Cooper]
is_a: TO:0000261 ! insect damage response trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2025-07-28T18:17:20Z

[Term]
id: TO:0001164
name: Hemiptera damage response trait
def: "An insect damage response trait (TO:0000261) which is caused by insects of the order Hemiptera (true bugs)." [NCBITaxon:7524, TO:Laurel_Cooper]
is_a: TO:0000261 ! insect damage response trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2025-07-28T18:20:40Z

[Term]
id: TO:0001165
name: Thysanoptera damage response trait
def: "An insect damage response trait (TO:0000261) which is caused by insects of the order Thysanoptera (thrips)." [NCBITaxon:30262, TO:Laurel_Cooper]
is_a: TO:0000261 ! insect damage response trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2025-07-28T18:35:12Z

[Term]
id: TO:0001166
name: starch quality trait
def: "A processing quality trait (TO:0001068) which includes the physical, biochemical and thermal properties of a type of starch." [TO:Laurel_Cooper]
comment: The physical, biochemical and thermal properties of a starch determine its functionality and how it behaves in food preparations and industrial applications. Starch quality can be measured using a a machine such as a Rapid Visco Analyser (RVA) where the viscosity of a starch slurry is monitored during controlled\nheating, holding, and cooling temperature cycles.
is_a: TO:0001068 ! processing quality trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2025-08-27T20:12:09Z

[Term]
id: TO:0001167
name: starch gelatinization trait
def: "A starch quality trait (TO:0001166) which is the tendency of a starch granule (GO:0043036) to swell and absorb water." [TO:Laurel_Cooper, Wikipedia:Starch_gelatinization]
comment: Starch gelatinization is a process of breaking down of intermolecular bonds of starch molecules in the presence of water and heat or alkali, allowing the hydrogen bonding sites (the hydroxyl hydrogen and oxygen) to engage more water. This irreversibly dissolves the starch granule in water. Gelatinization results in changes in viscosity of a starch slurry.
is_a: TO:0001166 ! starch quality trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2025-08-27T21:37:22Z

[Term]
id: TO:0001168
name: basal axillary shoot system morphology trait
def: "A shoot system morphology trait (TO:0000077) which is a quality of a basal axillary shoot system (tiller; PO:0005001)." [TO:Laurel_Cooper]
synonym: "tiller trait (exact)" EXACT []
is_a: TO:0000077 ! shoot system morphology trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2025-08-28T21:15:38Z

[Term]
id: TO:0001169
name: stomatal complex presence trait
def: "A shoot system morphology trait (TO:0000077) which is the presence of a stomatal complex (PO:0002000 )." [TO:Laurel_Cooper]
is_a: TO:0000077 ! shoot system morphology trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2025-09-02T22:17:04Z

[Term]
id: TO:0001170
name: fatty acid content trait
def: "A metabolite content trait (TO:0000281) which is the amount of one or more fatty acids in a plant structure (PO:0009011) or a plant-derived lipid." [TO:Laurel_Cooper]
comment: Fatty acids consist of a straight chain of an even number of carbon atoms, with hydrogen atoms along the length and at one end of the chain and a carboxyl group at the other end. Fatty acids may be saturated (no double bonds), or unsaturated (one or more double bonds). Fatty acids are an important component of lipids.
is_a: TO:0000281 ! metabolite content trait

[Term]
id: TO:0001171
name: seedling hypocotyl weight
def: "A seedling hypocotyl morphology trait (TO:0000769) which is the weight of a seedling hypocotyl (PO:0025291)." [TO:Laurel_Cooper]
xref: TO_GIT:507
is_a: TO:0000769 ! seedling hypocotyl morphology trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2025-09-08T18:11:58Z

[Term]
id: TO:0001172
name: polyphenol compound content
def: "A phenolic compound content ( TO:0020076) which involves polyphenols." []
comment: Polyphenols are characterized by their chemical structure, which consists of multiple phenol rings (C6H6O) linked together. Polyphenols include flavonoids phenolic acids (e.g., caffeic acid, ferulic acid), stilbenes (e.g., resveratrol) and lignans.
is_a: TO:0020076 ! phenolic compound content
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2025-09-15T22:44:44Z

[Term]
id: TO:0002600
name: floral organ size
def: "A floral organ morphology trait (TO:0000862) which is the size of a floral organ (PO:0025395)." [Gramene:pankaj_jaiswal, PO:0025395, TO:moorel]
comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
xref: PATO:0000117
is_a: TO:0000862 ! floral organ morphology trait

[Term]
id: TO:0002601
name: stamen size
def: "A stamen morphology trait (TO:0000225) which is the size of a stamen (PO:0009029)." [Gramene:pankaj_jaiswal, PO:0009029, TO:moorel]
comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large.
xref: PATO:0000117
is_a: TO:0000215 ! stamen morphology trait

[Term]
id: TO:0002602
name: pistil size
def: "A pistil morphology trait (TO:0000223) which is the size of a pistil." [Gramene:pankaj_jaiswal, TO:moorel]
comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
xref: PATO:0000117
is_a: TO:0000223 ! pistil morphology trait

[Term]
id: TO:0002603
name: petal size
def: "A petal morphology trait (TO:0000863) which is the size of a petal (PO:0009032)." [Gramene:pankaj_jaiswal, PO:0009032, TO:moorel]
comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large.
xref: PATO:0000117
is_a: TO:0000863 ! petal morphology trait

[Term]
id: TO:0002604
name: sepal size
def: "A sepal morphology trait (TO:0000864) which is the size of a sepal (PO:0009031)." [Gramene:pankaj_jaiswal, PO:0009031, TO:moorel]
comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large.
xref: PATO:0000117
is_a: TO:0000864 ! sepal morphology trait

[Term]
id: TO:0002605
name: petal length
def: "A petal morphology trait (TO:0000863) which is the length of a petal (PO:0009032)." [Gramene:pankaj_jaiswal, PO:0009032, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
xref: PATO:0000122
is_a: TO:0000863 ! petal morphology trait

[Term]
id: TO:0002606
name: petal width
def: "A petal morphology trait (TO:0000863) which is the width of a petal (PO:0009032) in a flower (PO:0009049)." [Gramene:pankaj_jaiswal, PO:0009032, PO:0009049, TO:moorel]
comment: Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
xref: PATO:0000921
is_a: TO:0000863 ! petal morphology trait

[Term]
id: TO:0002607
name: sepal length
def: "A sepal morphology trait (TO:0000864) which is the length of a sepal (PO:0009031)." [Gramene:pankaj_jaiswal, PO:0009031, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
xref: PATO:0000122
is_a: TO:0000864 ! sepal morphology trait

[Term]
id: TO:0002608
name: sepal width
def: "A sepal morphology trait (TO:0000864) which is the width of a sepal (PO:0009031) in a flower (PO:0009049)." [Gramene:pankaj_jaiswal, PO:0009031, PO:0009049, TO:moorel]
comment: Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
xref: PATO:0000921
is_a: TO:0000864 ! sepal morphology trait

[Term]
id: TO:0002609
name: stamen length
def: "A stamen morphology trait (TO:0000215) which is the length of a stamen (PO:0009029)." [Gramene:pankaj_jaiswal, PO:0009029, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
xref: PATO:0000122
is_a: TO:0000215 ! stamen morphology trait

[Term]
id: TO:0002610
name: pistil length
def: "A pistil morphology trait (TO:0000223) which is the length of a pistil." [Gramene:pankaj_jaiswal, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
xref: PATO:0000122
is_a: TO:0000223 ! pistil morphology trait

[Term]
id: TO:0002611
name: homeotic development trait
def: "A developmental trait resulting development of increased, decreased or new organs and organ parts due to a mutation that causes one member of a repetitive series to assume the identity of another member , for example, the transformation of sepals into petals." [Gramene:pankaj_jaiswal]
synonym: "homeotic mutation (related)" RELATED []
is_a: TO:0000927 ! plant organ growth and development trait

[Term]
id: TO:0002612
name: vegetative homeotic development trait
def: "A developmental trait resulting development of increased, decreased or new vegetative organs and organ parts due to a mutation that causes one member of a repetitive series to assume the identity of another member , for example, the transformation of leaves into scales." [Gramene:pankaj_jaiswal]
is_a: TO:0002611 ! homeotic development trait

[Term]
id: TO:0002613
name: reproductive homeotic development trait
def: "A developmental trait resulting development of increased, decreased or new reproductive organs and organ parts due to a mutation that causes one member of a repetitive series to assume the identity of another member , for example, the transformation of sepals into petals." [Gramene:pankaj_jaiswal]
is_a: TO:0002611 ! homeotic development trait

[Term]
id: TO:0002614
name: floral organ length
def: "A floral organ morphology trait (TO:0000862) which is the length of a floral organ (PO:0025395)." [Gramene:pankaj_jaiswal, PO:0025395, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
xref: PATO:0000122
is_a: TO:0000862 ! floral organ morphology trait

[Term]
id: TO:0002615
name: floral organ width
def: "A floral organ morphology trait (TO:0000862) which is the width of a floral organ (PO:0025395)." [Gramene:pankaj_jaiswal, PO:0025395, TO:moorel]
comment: Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
xref: PATO:0000921
is_a: TO:0000862 ! floral organ morphology trait

[Term]
id: TO:0002616
name: flowering time trait
def: "A plant phenological trait (TO:0000933) which is a quality of the timing of anthesis (flowering stage; PO:0007616)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Often influenced by the environment that includes, day light, temperature and geographic location.
synonym: "anthesis timing (related)" RELATED []
synonym: "time of flowering (related)" RELATED []
xref: TO_GIT:267
is_a: TO:0000933 ! plant phenological trait

[Term]
id: TO:0002617
name: fruit color
def: "A fruit morphology trait (TO:0002617) which is the color of a fruit (PO:0009001)." [Gramene:pankaj_jaiswal, PO:0009001, TO:moorel]
comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
xref: PATO:0000014
is_a: TO:0002629 ! fruit morphology trait

[Term]
id: TO:0002618
name: endocarp color
def: "An endocarp morphology trait (TO:0000946) which is a the color of an endocarp (PO:0009084)." [TO:austin_meier]
xref: PATO:0000014
xref: TO_GIT:293
is_a: TO:0000946 ! endocarp morphology trait
relationship: part_of TO:0002617 ! fruit color

[Term]
id: TO:0002619
name: mesocarp color
def: "A mesocarp morphology trait (TO:0000948) which is the color of a mesocarp (PO:0009087)." [TO:austin_meier, TO:Laurel_Cooper]
xref: PATO:0000014
xref: TO_GIT:294
is_a: TO:0000948 ! mesocarp morphology trait
relationship: part_of TO:0002617 ! fruit color

[Term]
id: TO:0002620
name: exocarp color
def: "An exocarp morphology trait (TO:0000906) which is the color of an exocarp (PO:0009085)." [TO:austin_meier, TO:Laurel_Cooper]
synonym: "epicarp color (exact)" EXACT []
xref: PATO:0000014
xref: TO_GIT:295
is_a: TO:0000906 ! exocarp morphology trait
relationship: part_of TO:0002617 ! fruit color

[Term]
id: TO:0002621
name: fruit columella color
def: "A fruit color trait (TO:0002617) which is the color of a fruit columella (PO:0004540)." [PO:0004540, TO:moorel]
comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
xref: PATO:0000014
is_a: TO:0000843 ! portion of plant tissue morphology trait
relationship: part_of TO:0002617 ! fruit color

[Term]
id: TO:0002622
name: locular tissue trait
def: "The traits observed for the locular tissue present around the seeds as found in Solanaceae." [SGN:nm]
comment: The values observed in tomato and pepper fruits may be defined differently.
is_a: TO:0002728 ! fruit quality trait

[Term]
id: TO:0002623
name: pericarp texture
def: "A pericarp morphology trait (TO:0000945) that is the texture of the pericarp (PO:0009084)." [TO:Laurel_Cooper]
xref: PATO:0000150
xref: TO_GIT:292
is_a: TO:0000945 ! pericarp morphology trait
relationship: part_of TO:0002728 ! fruit quality trait

[Term]
id: TO:0002624
name: exocarp texture
def: "An exocarp morphology trait (TO:0000906) that is the texture of the exocarp (PO:0009085)." [TO:austin_meier, TO:Laurel_Cooper]
xref: PATO:0000150
xref: TO_GIT:295
is_a: TO:0000906 ! exocarp morphology trait

[Term]
id: TO:0002625
name: fruit size
def: "A fruit morphology trait (TO:0002629) which is the size of a fruit (PO:0009001)." [Gramene:pankaj_jaiswal, TO:moorel]
comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large.
synonym: "FRSZ (related)" RELATED []
synonym: "kernel size (narrow)" NARROW []
synonym: "pod size (narrow)" NARROW []
xref: PATO:0000117
is_a: TO:0002629 ! fruit morphology trait

[Term]
id: TO:0002626
name: fruit length
def: "A fruit morphology trait (TO:0002629) which is the length of a fruit (PO:0009001)." [Gramene:pankaj_jaiswal, PO:0009001, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
synonym: "grain length  (narrow)" NARROW []
synonym: "GRLG (narrow)" NARROW []
synonym: "pod length (narrow)" NARROW []
xref: PATO:0000122
is_a: TO:0002629 ! fruit morphology trait

[Term]
id: TO:0002627
name: fruit width
def: "A fruit morphology trait (TO:0002629) which is the width of a fruit (PO:0009001)." [Gramene:pankaj_jaiswal, PO:0009001, TO:moorel]
comment: Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
synonym: "FRWD (related)" RELATED []
synonym: "kernel plumpness (related)" RELATED []
synonym: "kernel width (narrow)" NARROW []
synonym: "percentage of plump kernels (related)" RELATED []
synonym: "plump grain (related)" RELATED []
xref: PATO:0000921
is_a: TO:0002629 ! fruit morphology trait

[Term]
id: TO:0002628
name: fruit shape
def: "A fruit morphology trait (TO:0002629) which is the shape of a fruit (PO:0009001)." [Gramene:pankaj_jaiswal, TO:moorel]
comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
synonym: "pod shape (narrow)" NARROW []
xref: PATO:0000052
is_a: TO:0002629 ! fruit morphology trait

[Term]
id: TO:0002629
name: fruit morphology trait
def: "A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a fruit (PO:0009001)." [Gramene:pankaj_jaiswal, PO:0009001, TO:moorel]
synonym: "fruit morphology (related)" RELATED []
is_a: TO:0000836 ! multi-tissue plant structure morphology trait

[Term]
id: TO:0002630
name: fruit distal end shape
def: "A fruit shape (TO:0002628) which is the shape of a fruit distal end (PO:0008001)." [Gramene:pankaj_jaiswal, PO:0008001, TO:moorel]
comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
xref: PATO:0000052
is_a: TO:0002628 ! fruit shape

[Term]
id: TO:0002631
name: fruit proximal end shape
def: "A fruit shape (TO:0002628) which is the shape of the fruit proximal end (PO:0008002)." [Gramene:pankaj_jaiswal, PO:0008002, TO:moorel]
comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
xref: PATO:0000052
is_a: TO:0002628 ! fruit shape

[Term]
id: TO:0002632
name: fruit abscission zone size
def: "A fruit morphology trait (TO:0002632) which is the size of the fruit abscission zone (PO:0006503)." [Gramene:pankaj_jaiswal, PO:0006503, TO:moorel]
comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large.
synonym: "size stem scar size (related)" RELATED []
xref: PATO:0000117
is_a: TO:0002629 ! fruit morphology trait
is_a: TO:0002729 ! fruit senescing quality trait

[Term]
id: TO:0002633
name: fruit ripening trait
def: "A biological process trait (TO:0000283) that is the process of fruit ripening (GO:0009835)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Fruit ripening (GO:0009835) is an aging process that has as participant a fruit. Ripening causes changes in one or more characteristics of a fruit (color, aroma, flavor, texture, hardness, cell wall structure) and may make it more attractive to animals and aid in seed dispersal.
synonym: "fruit ripening (related)" RELATED []
xref: GO:0009835
xref: TO_GIT:256
is_a: TO:0000283 ! biological process trait
relationship: part_of TO:0000929 ! fruit growth and development trait

[Term]
id: TO:0002634
name: fruit firmness
def: "In addition to the fruit color, firmness is the best measurement of ripeness. It is assayed as the force necessary to break the flesh tissues and depends on the different growth stages during the ripening process." [BR:pj]
is_a: TO:0002728 ! fruit quality trait

[Term]
id: TO:0002635
name: leaf margin morphology trait
def: "A phyllome margin morphology trait (TO:0000834) which is a quality of a leaf margin (PO:0020128)." [Gramene:pankaj_jaiswal, PO:0020128]
comment: Often associated with leaf margin curvature.
synonym: "leaf margin curvature (related)" RELATED []
xref: TO_GIT:142
is_a: TO:0000834 ! phyllome margin morphology trait
created_by: jaiswalp

[Term]
id: TO:0002636
name: leaflet number
def: "A compound leaf morphology trait (TO:0001121) which is the number of leaflets (PO:0020049) in a compound leaf (PO:0020043)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
xref: TO_GIT:211
is_a: TO:0001121 ! compound leaf morphology trait

[Term]
id: TO:0002637
name: leaf size
def: "A leaf morphology trait (TO:0000748) which is the size of a leaf (PO:0025034)." [Gramene:pankaj_jaiswal, PO:0025034, TO:Laurel_Cooper]
comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.
xref: PATO:0000117
is_a: TO:0000748 ! leaf morphology trait

[Term]
id: TO:0002638
name: shoot meristem development
def: "An assay to associate observing effects on the development of shoot meristem." [Gramene:pankaj_jaiswal]
synonym: "shoot meristem abortion (related)" RELATED []
is_a: TO:0000654 ! shoot system growth and development trait
is_a: TO:0006016 ! meristem tissue development trait

[Term]
id: TO:0002639
name: shoot axis branching
def: "A shoot axis morphology trait (TO:0000739) which is the number of, or pattern of, branches arising from a shoot axis (PO:0025029)." [TO:Laurel_Cooper]
is_a: TO:0000739 ! shoot axis morphology trait

[Term]
id: TO:0002640
name: OBSOLETE fruit set trait
def: "OBSOLETE" []
is_obsolete: true

[Term]
id: TO:0002641
name: acid detergent fiber content
def: "A fiber content trait (TO:0002642) which is the proportion of fiber that is composed of cellulose and lignin and is highly indigestible or slowly digestible in a feed or forage." [GrainGenes_trait:Acid_Detergent_Fiber, Gramene:pankaj_jaiswal]
comment: Acid detergent fiber is composed of cellulose and lignin which are associated with low digestibility. The lower the acid detergent fiber, the more digestible the feed is and the higher the energy value of the feed.
synonym: "ACIDDETFIBR (related)" RELATED []
synonym: "ADF (related)" RELATED []
is_a: TO:0002642 ! fiber content trait

[Term]
id: TO:0002642
name: fiber content trait
def: "A plant quality trait (TO:0000597) which is the content and quality of fiber in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal] {comment="TO:Laurel_Cooper"}
is_a: TO:0000597 ! plant quality trait

[Term]
id: TO:0002643
name: carbon isotope discrimination
def: "It is a measure of the C isotopic composition in plant material relative to the value of the same ratio in the air of the environment where the plant is grown." [GrainGenes_trait:Carbon_isotope_discrimination, Gramene:pankaj_jaiswal, PMID:11756262]
synonym: "CBISOTPDISC (related)" RELATED []
is_a: TO:0000465 ! mineral and ion content trait

[Term]
id: TO:0002644
name: dry matter digestibility
def: "A plant quality trait (TO:0000597) which is the proportion of the dry matter content of a forage or feed that is digested in an animal body." [GrainGenes_trait:Dry_matter_digestibility, Gramene:iyt, Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Dry matter digestibility is usually expressed as a percentage.
synonym: "DMATTDIGAB (related)" RELATED []
is_a: TO:0000597 ! plant quality trait

[Term]
id: TO:0002645
name: malt tenderness
def: "Percentage of soft malt, measured from micro malting 50g of barley." [GrainGenes_trait:Malt_tenderness, PMID:12677407]
synonym: "MALTTENDER (related)" RELATED []
is_a: TO:0001070 ! brewing quality trait

[Term]
id: TO:0002646
name: flour particle size
def: "Size of flour particles determined after grinding the grains. The size depends on the length and type of grinding." [GrainGenes_trait:Particle_size, Gramene:pankaj_jaiswal]
comment: It affects the water absorption, dough handling characteristics and loaf volume while cooking.
synonym: "FLRPARTSZ (related)" RELATED []
is_a: TO:0001068 ! processing quality trait

[Term]
id: TO:0002647
name: starch digestibility
def: "A starch quality trait (TO:0001166) which the proportion of the starch content of a forage or feed that is digested by an animal." [GrainGenes_trait:Starch_digestibility, Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Starch digestibility is usually expressed as a percentage.
synonym: "STARCHDIG (related)" RELATED []
is_a: TO:0001166 ! starch quality trait

[Term]
id: TO:0002648
name: water absorption by seed
def: "A measure of the relative water absorption after soaking a known amount (weight) of seed." [GrainGenes_trait:Water_absorption, Gramene:pankaj_jaiswal]
synonym: "WABSORPSD (related)" RELATED []
is_a: TO:0000931 ! seed quality trait

[Term]
id: TO:0002649
name: pesticide response
def: "A chemical stress sensitivity (TO:0000482) which is the tolerance exhibited by a plant or a group of plants (population) towards the applied pesticide." [TO:Laurel_Cooper]
is_a: TO:0000482 ! chemical stress response

[Term]
id: TO:0002650
name: phototropism response trait
def: "The directional growth of a whole plant (PO:0000003) or plant structure (PO:0009011) in response to light." [Gramene:pankaj_jaiswal, PMID:15598797]
synonym: "coleoptile curvature (narrow)" NARROW []
synonym: "coleoptile phototropism (narrow)" NARROW []
is_a: TO:0000075 ! light reponse trait

[Term]
id: TO:0002651
name: shoot axis phototropism response trait
def: "A phototropism response trait (TO:0002650) which is the directional growth of a shoot axis (PO:0025029) in response to light." [Gramene:pankaj_jaiswal, PMID:15598797]
is_a: TO:0002650 ! phototropism response trait

[Term]
id: TO:0002652
name: root phototropism response trait
def: "A phototropism response trait (TO:0002650) which which is the directional growth of a root (PO:0009005) in response to light." [Gramene:pankaj_jaiswal, PMID:15598797]
is_a: TO:0002650 ! phototropism response trait

[Term]
id: TO:0002653
name: endosperm storage protein content
def: "Assay for the amount of seed storage protein present in the endosperm." [Gramene:pankaj_jaiswal]
is_a: TO:0000490 ! seed protein content

[Term]
id: TO:0002654
name: pyruvate orthophosphate dikinase activity trait
def: "Catalysis of the reaction: ATP + pyruvate + phosphate = AMP + phosphoenolpyruvate + diphosphate." [EC:2.7.9.1, GO:0050242, Gramene:pankaj_jaiswal]
synonym: "PPDK (exact)" EXACT []
synonym: "Pyruvate phosphate dikinase (exact)" EXACT []
synonym: "Pyruvate, phosphate phosphotransferase (exact)" EXACT []
is_a: TO:0000599 ! enzyme activity trait

[Term]
id: TO:0002655
name: starch grain size
def: "A starch quality trait (TO:0001166) which the size of a starch grain (GO:0043036)." [Gramene:pankaj_jaiswal]
is_a: TO:0001166 ! starch quality trait

[Term]
id: TO:0002656
name: starch grain shape
def: "Assay to determine the shape of the starch grain.\n\nA starch quality trait (TO:0001166) which the shape of a starch grain (GO:0043036)." [Gramene:pankaj_jaiswal]
is_a: TO:0001166 ! starch quality trait

[Term]
id: TO:0002657
name: oxidative stress response
def: "A chemical stress response trait (TO:0000482) reactive oxygen species  in the growth environment." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper, TO:moorel]
comment: Some plants may have the ability to detoxify reactive intermediates.
is_a: TO:0000482 ! chemical stress response

[Term]
id: TO:0002658
name: starch grain synthesis
def: "An assay to determine if the starch grains are formed in a plant structure (PO:0009011). Often associated with the starch biosynthesis and branching of the starch." [Gramene:pankaj_jaiswal]
is_a: TO:0000283 ! biological process trait

[Term]
id: TO:0002659
name: pistil number
def: "A pistil morphology trait (TO:0000223) which is the number of pistils in the gynoecium (PO:0009062)." [Gramene:pankaj_jaiswal, PO:0009062, TO:moorel]
is_a: TO:0000223 ! pistil morphology trait

[Term]
id: TO:0002660
name: cytokinin content
def: "Measures the cytokinin content in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
is_a: TO:0000476 ! growth hormone content

[Term]
id: TO:0002661
name: seed maturation
def: "This trait can be derived based on the parameters like, degree of grain filling, grain hardness, hull color, grain moisture, etc. It can be determined for (a)synchronously with any of these parameters." [Gramene:pankaj_jaiswal]
synonym: "asynchronous seed maturation (related)" RELATED []
synonym: "nonsynchronous seed maturation (related)" RELATED []
synonym: "SDMT (related)" RELATED []
synonym: "synchronous seed maturation (related)" RELATED []
is_a: TO:0000653 ! seed growth and development trait

[Term]
id: TO:0002662
name: leaf rolling tolerance
def: "A leaf rolling trait (TO:0000085) which is the tolerance for leaf rolling or wilting observed in response to stresses like drought, water and temperature. It precedes leaf drying stage." [Gramene:pankaj_jaiswal, TO:moorel]
synonym: "Cold-induced wilting tolerance (broad)" BROAD []
synonym: "LFRLTL (exact)" EXACT []
synonym: "wilting tolerance (narrow)" NARROW []
is_a: TO:0000085 ! leaf rolling response

[Term]
id: TO:0002663
name: leaf necrosis tolerance
def: "Tolerance for leaf necrosis or scorching observed in response to stresses like drought, insecticides and cold temperature as evidenced by less number or chlorotic and/or necrotic tissue." [Gramene:pankaj_jaiswal]
synonym: "Cold-induced necrosis tolerance (related)" RELATED []
synonym: "LFNECTL (related)" RELATED []
synonym: "necrosis tolerance (related)" RELATED []
is_a: TO:0000652 ! leaf necrosis

[Term]
id: TO:0002664
name: leaf yellowing tolerance
def: "Tolerance for leaf color yellowing observed in response to stresses like drought, water and temperature. It may precedes leaf drying stage." [Gramene:pankaj_jaiswal]
synonym: "Cold-induced yellowing tolerance (broad)" BROAD []
synonym: "LFYTL (related)" RELATED []
is_a: TO:0000326 ! leaf color

[Term]
id: TO:0002665
name: root hair length
def: "A root morphology trait (TO:0000043) which is the length of a root hair (GO:0035618) present on a root (PO:0009005)." [Gramene:pankaj_jaiswal]
comment: Root hair length can be calculated as the average maximum length of the root hairs present.
synonym: "RTHLG (related)" RELATED []
synonym: "RTHRLG (related)" RELATED []
is_a: TO:0000043 ! root morphology trait

[Term]
id: TO:0002666
name: seed phosphorus content
def: "Amount of phosphorus in the seed." [Gramene:pankaj_jaiswal]
synonym: "SDPHOCN (related)" RELATED []
is_a: TO:0001024 ! phosphorus content

[Term]
id: TO:0002667
name: abscisic acid content
def: "A growth hormone content (TO:0000476) trait which is the abscisic acid (CHEBI:62431) content in a plant structure (PO:0009011)." [CHEBI:62431]
synonym: "ABA content (related)" RELATED []
synonym: "ABACN (related)" RELATED []
xref: CHEBI:62431
is_a: TO:0000476 ! growth hormone content

[Term]
id: TO:0002668
name: jasmonic acid content
def: "Measures the jasmonic acid content in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal, PMID:17031029]
synonym: "JA content (related)" RELATED []
synonym: "jasmonate content (related)" RELATED []
is_a: TO:0000476 ! growth hormone content

[Term]
id: TO:0002669
name: phytoalexin content
def: "A metabolite content trait (TO:0000281) which is phytoalexin content in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Phytoalexins are antimicrobial compounds that plants produce on demand at sites of pathogen infection or stress to defend themselves. These substances vary in chemical structure, with examples including isoflavonoids in legumes like soybean, diterpenoids in rice, and sesquiterpenes in pepper plants.
is_a: TO:0000281 ! metabolite content trait

[Term]
id: TO:0002670
name: momilactone A content
def: "Measures the momilactone A content in a plant structure (PO:0009011)." [PMID:16569039]
comment: Momilactone A is a instance of diterpenoid phytoalexin.
synonym: "phytoalexin momilactone A content (related)" RELATED []
is_a: TO:0002669 ! phytoalexin content

[Term]
id: TO:0002671
name: momilactone B content
def: "Measures the momilactone B content in a plant structure (PO:0009011)." [PMID:16569039]
comment: Momilactone B is a instance of diterpenoid phytoalexin.
synonym: "phytoalexin momilactone B content (related)" RELATED []
is_a: TO:0002669 ! phytoalexin content

[Term]
id: TO:0002672
name: auxin content
def: "A growth hormone content (TO:0000476) trait which is the amount of auxin (CHEBI:22676) in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal, PMID:16908506]
comment: The most important auxin produced by plants is indole-3-acetic acid (IAA).
synonym: "AUXCN (related)" RELATED []
xref: CHEBI:22676
is_a: TO:0000476 ! growth hormone content

[Term]
id: TO:0002673
name: amino acid content
def: "A metabolite content trait (TO:0000281) which is the amino acid content in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
is_a: TO:0000281 ! metabolite content trait

[Term]
id: TO:0002674
name: tryptophan content
def: "Amino acid tryptophan content in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
is_a: TO:0002673 ! amino acid content

[Term]
id: TO:0002675
name: gibberellic acid content
def: "Measures the gibberellic acid content in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
synonym: "GA content (related)" RELATED []
synonym: "GACN (related)" RELATED []
synonym: "gibberellin content (related)" RELATED []
is_a: TO:0000476 ! growth hormone content

[Term]
id: TO:0002676
name: brassinosteroid content
def: "Measures the brassinosteroid content in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
comment: Brassinosteroids (BR) are a group of steroidal plant hormones.
synonym: "BRCN (related)" RELATED []
is_a: TO:0000476 ! growth hormone content

[Term]
id: TO:0002677
name: brassinosteroid sensitivity
def: "Response with respect to application of Brassinosteroid." [Gramene:pankaj_jaiswal]
comment: Brassinosteroids (BR) are a group of steroidal plant hormones.
synonym: "BRSN (related)" RELATED []
is_a: TO:0000401 ! plant growth hormone response

[Term]
id: TO:0002678
name: panicleless
def: "A panicle number (TO:0000152) trait which is the absence of panicle in the plant, either due to the abortion of the developmental process and/or due to environmental factors." [Gramene:pankaj_jaiswal, TO:moorel]
is_a: TO:0000152 ! panicle number
is_a: TO:0002679 ! inflorescenceless

[Term]
id: TO:0002679
name: inflorescenceless
def: "The absence of inflorescence in the plant, either due to the abortion of the inflorescence developmental process and/or due to environmental factors." [Gramene:pankaj_jaiswal]
is_a: TO:0000582 ! inflorescence number

[Term]
id: TO:0002680
name: albumin content
def: "A seed protein content (TO:0000490) trait which is the amount of albumin protein in a seed." [Gramene:pankaj_jaiswal]
comment: Albumin proteins area class of globular proteins which are soluble in pure water.
synonym: "albumen content (related)" RELATED []
is_a: TO:0000490 ! seed protein content

[Term]
id: TO:0002681
name: leaf curling
def: "An assay to measure the extent of curling of the leaf lamina." [Gramene:pankaj_jaiswal]
comment: This is due to the changes in the leaf developmental process and is different from the leaf rolling (TO:0000085) observed due to the water deficient or dorught linke conditions.
synonym: "curled leaf trait (related)" RELATED []
synonym: "frizzled leaf trait (related)" RELATED []
is_a: TO:0000655 ! leaf growth and development trait

[Term]
id: TO:0002682
name: plant cell shape
def: "A plant cell morphology trait (TO:0002683) which is the shape of a plant cell (PO:0009002) type." [Gramene:pankaj_jaiswal, PO:0009002, TO:moorel]
comment: Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
xref: PATO:0000052
is_a: TO:0002683 ! plant cell morphology trait

[Term]
id: TO:0002683
name: plant cell morphology trait
def: "A plant structure morphology trait (TO:0000839) which is a quality of a plant cell (PO:0009002)." [Gramene:pankaj_jaiswal, PO:0009002, TO:moorel]
xref: TO_GIT:307
is_a: TO:0000839 ! plant structure morphology trait

[Term]
id: TO:0002684
name: plant cell size
def: "A plant cell morphology trait (TO:0002683) which is the size of a plant cell (PO:0009002) type." [Gramene:pankaj_jaiswal, PO:0009002, TO:moorel]
comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
xref: PATO:0000117
is_a: TO:0002683 ! plant cell morphology trait

[Term]
id: TO:0002685
name: crown root number
def: "A count of number of crown roots present in the seedling." [Gramene:pankaj_jaiswal]
is_a: TO:0000084 ! root number

[Term]
id: TO:0002686
name: cell growth and development trait
def: "Traits associated with observing effects on the growth and development of the plant cell and its parts." [Gramene:pankaj_jaiswal]
is_a: TO:0000928 ! plant structure growth and development trait

[Term]
id: TO:0002687
name: cell elongation trait
def: "An assay to determine the variation in the length of the plant cell due to cell growth and elongation." [Gramene:pankaj_jaiswal]
synonym: "cell length (related)" RELATED []
is_a: TO:0002686 ! cell growth and development trait

[Term]
id: TO:0002688
name: leaf lamina joint bending
def: "A leaf lamina morphology trait (TO:0000829) which is the extent of the bending that occurrs to the leaf lamina (PO:0020039) joint in degrees." [Gramene:pankaj_jaiswal, PMID:14615594, PO:0020039, TO:moorel]
comment: It may happen due to environmental stress such as upon brassinosteroid treatment.
is_a: TO:0000829 ! leaf lamina morphology trait

[Term]
id: TO:0002689
name: leaf sheath length
def: "A leaf sheath morphology trait (TO:0000835) which is the length of the leaf sheath (PO:0020104)." [Gramene:pankaj_jaiswal, PO:0020104, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. Usually measured in in centimeters.
synonym: "LFSLG (related)" RELATED []
xref: PATO:0000122
is_a: TO:0000835 ! leaf sheath morphology trait

[Term]
id: TO:0002690
name: leaf lamina length
def: "A leaf lamina morphology trait (TO:0000829) which is the length of the leaf laimina (PO:0020039)." [Gramene:pankaj_jaiswal, PO:0020039, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. Usually measured in centimeters.
synonym: "leaf blade length (exact)" EXACT []
synonym: "LFLLG (related)" RELATED []
xref: PATO:0000122
is_a: TO:0000829 ! leaf lamina morphology trait

[Term]
id: TO:0002691
name: peduncle length
def: "A peduncle morphology trait (TO:0000776) which is the length of a peduncle (PO:0009053)." [Gramene:pankaj_jaiswal, PO:0009053, TO:Laurel_Cooper]
comment: Peduncle is the stalk of an inflorescence; that part of the inflorescence below the first flower or inflorescence branch and above the last foliage leaf/pair of foliage leaves.\nRefers to the length ((PATO:0000122):A 1-D extent quality which is equal to the distance between two points) of a peduncle (PO:0009053).
synonym: "neck internode length (exact)" EXACT [PMID:17303594]
xref: PATO:0000122
xref: TO_GIT:88
is_a: TO:0000776 ! peduncle morphology trait

[Term]
id: TO:0002692
name: root meristem development
def: "An assay to determine the variation in the root meristem development." [Gramene:pankaj_jaiswal, PMID:17303594]
comment: The variation may be due to both the genotypic and/or environmental effects.
is_a: TO:0000656 ! root development trait
is_a: TO:0006016 ! meristem tissue development trait

[Term]
id: TO:0002693
name: gravity response trait
def: "An abiotic plant stress response trait (TO:0000168) which is the response of a plant structure (PO:0009011) to abnormal gravity." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
is_a: TO:0000168 ! abiotic plant stress response trait

[Term]
id: TO:0002694
name: fruit flavor trait
def: "An assay to determine the sensory impression of a fruit by the chemical senses of taste and smell." [Gramene:pankaj_jaiswal]
synonym: "pod flavor trait (narrow)" NARROW []
xref: TO_GIT:117
is_a: TO:0002728 ! fruit quality trait

[Term]
id: TO:0002695
name: beta-carotene content
def: "The beta-carotene content in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
comment: The most common form of carotenoid is beta-carotene.
synonym: "beta-carotenoid content (exact)" EXACT []
is_a: TO:0002697 ! cyclic carotene content

[Term]
id: TO:0002696
name: alpha carotene content
def: "The alpha-carotene content in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
comment: The alpha-carotene is the second most common form of carotenoid.
synonym: "alpha-carotenoid content (exact)" EXACT []
is_a: TO:0002697 ! cyclic carotene content

[Term]
id: TO:0002697
name: cyclic carotene content
def: "The cyclic carotene content in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
is_a: TO:0000289 ! carotene content

[Term]
id: TO:0002698
name: acyclic carotene content
def: "The acyclic carotene content in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
is_a: TO:0000289 ! carotene content

[Term]
id: TO:0002699
name: lycopene content
def: "The lycopene content in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
comment: Lycopene is the most efficient quencher of singlet oxygen free radicals.
is_a: TO:0002698 ! acyclic carotene content

[Term]
id: TO:0002700
name: pungency
def: "The quality of producing a sharp sensation of taste or smell." [Gramene:pankaj_jaiswal]
is_a: TO:0002694 ! fruit flavor trait

[Term]
id: TO:0002701
name: lutein content
def: "The leutein content in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
is_a: TO:0000301 ! xanthophyll content

[Term]
id: TO:0002702
name: Cercospora leaf spot response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Cercospora spp." [Gramene:pankaj_jaiswal, NCBITaxon:29002, TO:Laurel_Cooper]
is_a: TO:0001145 ! Ascomycete fungal disease response

[Term]
id: TO:0002703
name: OBSOLETE protist disease resistance
def: "OBSOLETE  The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a protist infection as compared to the susceptible and/or the reference plants of the same species." [Gramene:pankaj_jaiswal]
is_obsolete: true

[Term]
id: TO:0002704
name: Meloidogyne incognita resistance
def: "Causal agent: Meloidogyne incognita. Symptom: resistant to damage caused by the pathogen Meloidogyne incognita (root knot nematode). It  produces characteristic galls (swellings) on roots." [Gramene:pankaj_jaiswal]
is_a: TO:0000384 ! nematode damage response trait

[Term]
id: TO:0002705
name: cucurbit downy mildew response
def: "Causal agent: Pseudoperonospora cubensis." [Gramene:pankaj_jaiswal, NCBITaxon:143453, TO:Laurel_Cooper]
comment: It causes the downy mildew disease in cucurbits.
is_a: TO:0001144 ! Oomycete disease response

[Term]
id: TO:0002706
name: Meloidogyne javanica resistance
def: "Causal agent: Meloidogyne javanica. Symptom: resistant to damage caused by the pathogen Meloidogyne javanica (root knot nematode). It  produces characteristic galls (swellings) on roots." [Gramene:pankaj_jaiswal]
is_a: TO:0000384 ! nematode damage response trait

[Term]
id: TO:0002707
name: petiole color
def: "A petiole morphology trait (TO:0000765) which is the color of the petiole (PO:0020038)." [Gramene:pankaj_jaiswal, PO:0020038, TO:moorel]
comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
xref: PATO:0000014
is_a: TO:0000765 ! petiole morphology trait

[Term]
id: TO:0002708
name: xylem color
def: "The color of the xylem tissue." [Gramene:pankaj_jaiswal]
is_a: TO:0000470 ! vascular tissue morphology trait

[Term]
id: TO:0002709
name: phloem color
def: "The color of the phloem tissue." [Gramene:pankaj_jaiswal]
is_a: TO:0000470 ! vascular tissue morphology trait

[Term]
id: TO:0002710
name: root shape
def: "A root morphology trait (TO:0000043) which is the shape of a root (PO:0009005)." [Gramene:pankaj_jaiswal] {comment="TO:Laurel_Cooper"}
is_a: TO:0000043 ! root morphology trait

[Term]
id: TO:0002712
name: stay green trait
def: "A whole plant growth and development trait (TO:0000947) which is the color of plant and the photosynthetic organs remain green compared to turning yellow and or brown at the time of senescing." [Gramene:pankaj_jaiswal]
is_a: TO:0000947 ! whole plant growth and development trait
relationship: part_of TO:0000326 ! leaf color

[Term]
id: TO:0002713
name: cell organelle morphology trait
def: "A plant cell morphology trait (TO:0002683) which is a quality of a cell organelle." [Gramene:pankaj_jaiswal, TO:moorel]
synonym: "cell organelle development trait (related)" RELATED []
synonym: "organelle biogenesis trait (narrow)" NARROW []
synonym: "organelle structure trait (narrow)" NARROW []
is_a: TO:0002683 ! plant cell morphology trait

[Term]
id: TO:0002714
name: plastid development trait
def: "A plant structure growth and development trait (TO:0000928) which is a quality of plastid development." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "plastid biogenesis trait (narrow)" NARROW []
synonym: "plastid structure trait (narrow)" NARROW []
is_a: TO:0000928 ! plant structure growth and development trait
is_a: TO:0002755 ! cell organelle development trait

[Term]
id: TO:0002715
name: chloroplast development trait
def: "Trait(s) associated with phenotypes observed for abnormal development of chloroplast structure and biogenesis." [Gramene:pankaj_jaiswal]
synonym: "chloroplast biogenesis trait (narrow)" NARROW []
synonym: "chloroplast structure trait (narrow)" NARROW []
is_a: TO:0002714 ! plastid development trait

[Term]
id: TO:0002716
name: leaf sheath auricle pubescence
def: "A leaf sheath morphology trait (TO: 0002717) which is the extent of pubescence (presence of hairs) on the leaf sheath auricle (PO:0020106)." [Gramene:pankaj_jaiswal, PO:0020106]
synonym: "AUPUBES (related)" RELATED []
is_a: TO:0002717 ! leaf sheath auricle morphology trait

[Term]
id: TO:0002717
name: leaf sheath auricle morphology trait
def: "A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf sheath auricle (PO:0020106)." [Gramene:pankaj_jaiswal, PO:0020106, TO:Laurel_Cooper]
xref: TO_GIT:143
is_a: TO:0000754 ! cardinal organ part morphology trait

[Term]
id: TO:0002718
name: awn morphology trait
def: "A cardinal organ part morphology trait (TO:0000754) which is a quality of an awn (PO:0025349)." [Gramene:pankaj_jaiswal, PO:0025349, TO:moorel]
is_a: TO:0000754 ! cardinal organ part morphology trait

[Term]
id: TO:0002719
name: awn thickness
def: "An awn morphology trait (TO:0002718) which is the thickness of the awn (PO:0025349) measured at a given distance from the apiculus." [Gramene:pankaj_jaiswal, PO:0025349, TO:moorel]
comment: Refer to thickness (PATO:0000915): A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width.
synonym: "AWNTH (related)" RELATED []
xref: PATO:0000915
is_a: TO:0002718 ! awn morphology trait

[Term]
id: TO:0002720
name: leaf lamina width
def: "A leaf lamina morphology trait (TO:0000829) which is the width of the leaf lamina (PO:0020039)." [Gramene:pankaj_jaiswal, PO:0020039, TO:moorel]
comment: Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. in centimeters
synonym: "leaf blade width (related)" RELATED []
synonym: "LFLWD (exact)" EXACT []
xref: PATO:0000921
is_a: TO:0000829 ! leaf lamina morphology trait

[Term]
id: TO:0002721
name: leaf sheath width
def: "A leaf sheath morphology trait (TO:0000835) which is the width of the leaf sheath (PO:0020104)." [Gramene:pankaj_jaiswal, PO:0020104, TO:Laurel_Cooper, TO:moorel]
comment: Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
xref: PATO:0000921
is_a: TO:0000835 ! leaf sheath morphology trait

[Term]
id: TO:0002722
name: leaf pubescence
def: "A leaf morphology trait (TO:0000748) which is the presence of leaf trichomes (PO:0006504; hairs) on a leaf (PO:0025034)." [Gramene:pankaj_jaiswal, PO:0025034, TO:Laurel_Cooper]
comment: Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down.
xref: PATO:0001320
is_a: TO:0000748 ! leaf morphology trait
created_by: jaiswalp

[Term]
id: TO:0002723
name: leaf lamina margin pubescence
def: "A leaf lamina margin morphology trait (TO:0000830) which is the extent of pubescence  (presence of hairs) on a leaf lamina margin (PO:0025009)." [Gramene:pankaj_jaiswal]
comment: Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down.
synonym: "leaf blade margin pubescence (related)" RELATED []
synonym: "LFLMPUBES (related)" RELATED []
xref: PATO:0001320
is_a: TO:0000830 ! leaf lamina margin morphology trait

[Term]
id: TO:0002724
name: leaf sheath color
def: "A leaf sheath morphology trait (TO:0000835) which is the color of the leaf sheath (PO:0020104)." [Gramene:pankaj_jaiswal, PO:0020104, TO:moorel]
comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts.
synonym: "LFSCL (related)" RELATED []
xref: PATO:0000014
is_a: TO:0000835 ! leaf sheath morphology trait

[Term]
id: TO:0002725
name: life cycle habit
def: "Determined for type of life cycle being annual, biannual, perennial etc." [Gramene:pankaj_jaiswal]
synonym: "LIFECYCHAB (related)" RELATED []
is_a: TO:0000933 ! plant phenological trait

[Term]
id: TO:0002726
name: sterile lemma shape
def: "A lemma morphology trait (TO:1000023) which is the shape of a sterile lemma (PO:0009040)." [Gramene:pankaj_jaiswal, PATO:0000052, PO:0009040, TO:Laurel_Cooper, TO:moorel]
comment: Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
synonym: "STLEMSHP (related)" RELATED []
xref: TO_GIT:390
is_a: TO:1000023 ! lemma morphology trait

[Term]
id: TO:0002727
name: sterile lemma width
def: "A lemma morphology trait (TO:0000079) which is the width of a sterile lemma (PO:0009040)." [Gramene:pankaj_jaiswal, PATO:0000921, PO:0009040, TO:Laurel_Cooper]
comment: Measured in the widest portion of the sterile lemma.\n\nRefer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
synonym: "STLEMWD (related)" RELATED []
xref: TO_GIT:390
is_a: PATO:0000921 {is_inferred="true"} ! width
is_a: TO:1000023 {is_inferred="true"} ! lemma morphology trait
relationship: inheres_in PO:0009040 {is_inferred="true"} ! sterile lemma

[Term]
id: TO:0002728
name: fruit quality trait
def: "A plant quality trait (TO:0000597) which is the commercial and/or economic value of a fruit (PO:0009001) , or its overall improvement." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
xref: TO_GIT:263
is_a: TO:0000597 ! plant quality trait

[Term]
id: TO:0002729
name: fruit senescing quality trait
def: "Traits associated with the fruit abscission zone." [Gramene:pankaj_jaiswal]
is_a: TO:0002728 ! fruit quality trait

[Term]
id: TO:0002730
name: grain shape
def: "A caryopsis fruit morphology trait (TO:0001079) which is the shape of a grain (caryopsis fruit; PO:0030104)." [Gramene:pankaj_jaiswal, TO:moorel] {comment="TO:Laurel_Cooper"}
comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
synonym: "dehulled grain shape (related)" RELATED []
synonym: "DHULGRSHP (related)" RELATED []
synonym: "GRSHP (related)" RELATED []
xref: PATO:0000052
is_a: TO:0001079 ! caryopsis fruit morphology trait

[Term]
id: TO:0002731
name: dehulled grain length to width ratio
def: "A grain size (TO:0000397) which is the grain length and grain width on dehulled grain." [Gramene:pankaj_jaiswal, TO:moorel]
synonym: "dehulled-grain length to width ratio (related)" RELATED []
synonym: "DHULGRLGWDRO (related)" RELATED []
synonym: "GRLHWDRO (related)" RELATED []
xref: PATO:0000117
xref: PATO:0000122
xref: PATO:0000921
is_a: TO:0001079 ! caryopsis fruit morphology trait

[Term]
id: TO:0002732
name: flag leaf angle: early stage
def: "In grasses the flag leaf angle is measured near the collar as the angle of attachment between the flag leaf blade and the main inflorescence axis in grass plants. Observed around anthesis stage." [Gramene:pankaj_jaiswal]
synonym: "flag leaf attitude: early stage (related)" RELATED []
synonym: "FLFAGERLY (related)" RELATED []
is_a: TO:0000124 ! flag leaf angle

[Term]
id: TO:0002733
name: flag leaf angle: late stage
def: "In grasses the flag leaf angle is measured near the collar as the angle of attachment between the flag leaf blade and the main inflorescence axis in grass plants. Observed at maturity stage." [Gramene:pankaj_jaiswal]
synonym: "flag leaf attitude: late stage (related)" RELATED []
synonym: "FLFAGLATE (related)" RELATED []
is_a: TO:0000124 ! flag leaf angle

[Term]
id: TO:0002734
name: awn presence
def: "An awn morphology trait (TO:0002718) which is the presence or absence of an awn (PO:0025349). Observation may include relative awn size." [Gramene:pankaj_jaiswal, PO:0025349, TO:moorel]
comment: Refer to presence value PATO:0000458.
synonym: "AWNPLU (related)" RELATED []
xref: PATO:0000458
is_a: TO:0002718 ! awn morphology trait

[Term]
id: TO:0002735
name: straighthead
def: "Malformed inflorescence (panicle in rice), by staying upright/straight at the time of maturity and may carry infertile seeds." [Gramene:pankaj_jaiswal, http://plantpathology.tamu.edu/Texlab/Grains/Rice/rices.html]
comment: For rice: Straighthead is a physiological disorder that causes the entire head to be blank and remain upright at maturity in rice. Straighthead generally occurs in spots scattered throughout a field and is most easily recognized near harvest when normal plants have downturned heads (from the weight of the grain in the panicle). The disease is frequently found on sandy loam soils but seldom on clay soils. Old cotton fields with arsenic residues can have a severe incidence of straighthead. Other, as yet unknown, soil factors are also involved in causing straighthead. Often it is found in fields where excessive non-decayed vegetation has been plowed under just before planting. The disease is characterized by upright heads when the rice matures due to infertile seed. Hulls may be distorted into a crescent shape or "parrot beak". One or both hulls may be missing. Affected plants continue to grow, are a darker green, and often produce shoots from a lower portion of the plant. First year crops of rice grown on "new ground" are more likely to be affected. Some varieties are more tolerant than others. Control measures include planting resistant varieties and draining fields with a history of the disorder just prior to internode elongation.
is_a: TO:0000373 ! inflorescence morphology trait

[Term]
id: TO:0002736
name: flower number trait
def: "An inflorescence morphology trait (TO:0000582 ) which is the number of flowers (PO:0009046)." [Gramene:pankaj_jaiswal, PO:0009046, TO:moorel]
xref: PATO:0001555
is_a: TO:0000373 ! inflorescence morphology trait

[Term]
id: TO:0002737
name: floret number per branch
def: "Average number of flowers (florets) per branch in a grass inflorescence." [Gramene:pankaj_jaiswal]
synonym: "FLNBPBR (related)" RELATED []
is_a: TO:0000670 ! floret number

[Term]
id: TO:0002738
name: floret number per inflorescence
def: "Average number of flowers (florets) in a grass inflorescence." [Gramene:pankaj_jaiswal]
synonym: "FLNBPINFLO (related)" RELATED []
synonym: "FLNBPPN (related)" RELATED []
synonym: "floret number per panicle (related)" RELATED []
synonym: "florets per inflorescence (related)" RELATED []
synonym: "florets per panicle (exact)" EXACT []
is_a: TO:0000670 ! floret number

[Term]
id: TO:0002739
name: fruit surface area
def: "Average whole fruit surface area." [Gramene:pankaj_jaiswal]
synonym: "FRUTSURFAR (related)" RELATED []
is_a: TO:0002728 ! fruit quality trait

[Term]
id: TO:0002741
name: grain surface area
alt_id: TO:0002740
def: "The average surface area of the grain without hull (dehulled) in a grass fruit caryopsis." [Gramene:pankaj_jaiswal]
synonym: "dehulled-grain surface area (related)" RELATED []
synonym: "DHULGRSURFAR (related)" RELATED []
synonym: "GRSURFAR (related)" RELATED []
synonym: "hulled-grain surface area (related)" RELATED []
synonym: "kernel surface area (related)" RELATED []
is_a: TO:0002739 ! fruit surface area

[Term]
id: TO:0002742
name: fruit volume
def: "A fruit morphology trait (TO:0002629) which is the volume of the fruit (PO:0002629)." [Gramene:pankaj_jaiswal, PO:0002629]
comment: Refer to volume (PATO:0000918): A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies.
xref: PATO:0000918
is_a: TO:0002629 ! fruit morphology trait

[Term]
id: TO:0002743
name: dehulled grain volume
def: "A grain volume (TO:0001108) which is the volume of a dehulled grain." [Gramene:pankaj_jaiswal, TO:moorel]
comment: Refer to volume (PATO:0000918): A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies.
synonym: "DHULGRVOL (exact)" EXACT []
xref: PATO:0000918
is_a: TO:0001108 ! grain volume

[Term]
id: TO:0002744
name: fruit curved length
def: "A fruit length (TO:0002626) which is the average length of the curved surface of fruit (PO:0009001)." [Gramene:pankaj_jaiswal, PO:0009001, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
xref: PATO:0000122
is_a: TO:0002626 ! fruit length

[Term]
id: TO:0002745
name: grain curved length
def: "A grain length (TO:0000734) which is the curved surface of grain without hull (dehulled)." [Gramene:pankaj_jaiswal, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
synonym: "curved length of dehulled-grain (exact)" EXACT []
synonym: "dehulled-grain curved length (exact)" EXACT []
synonym: "DHULGRCURVLG (related)" RELATED []
xref: PATO:0000122
is_a: TO:0000734 ! grain length

[Term]
id: TO:0002746
name: fruit weight
def: "A fruit morphology trait (TO:0002629) that is the weight of a fruit (PO:0009001)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: Fruit weight is the weight of one or more fruits at a specified level of maturity and, for grain, moisture level. In maize it is often reported as 100 or 1000 kernel weight, in grams and at 15% moisture content.
xref: TO_GIT:242
is_a: TO:0002629 ! fruit morphology trait

[Term]
id: TO:0002747
name: 10-dehulled grain weight
def: "A dehulled grain weight (TO:0000590) which is the weight of a sample of 10 dehulled grains (caryopsis fruit; PO:0030104)." [Gramene:pankaj_jaiswal] {comment="TO:Laurel_Cooper"}
synonym: "10 grain weight (broad)" BROAD []
synonym: "ten dehulled grain weight (exact)" EXACT []
synonym: "ten grain weight (broad)" RELATED []
synonym: "TENDHULGRWT (exact)" EXACT []
synonym: "TENGRWT (broad)" BROAD []
is_a: TO:0000590 ! dehulled grain weight

[Term]
id: TO:0002748
name: ligule morphology trait
def: "A vascular leaf morphology trait (TO:0000419) which is a quality of a ligule (PO:0020105)." [Gramene:pankaj_jaiswal, PO:0020105, TO:Laurel_Cooper]
is_a: TO:0000419 ! vascular leaf morphology trait

[Term]
id: TO:0002749
name: ligule pubescence
def: "A ligule morphology trait (TO:0002748) which is the extent of pubescence (presence of hairs) on the ligule (PO:0020105)." [Gramene:pankaj_jaiswal, PO:0020105, TO:Laurel_Cooper]
comment: Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down.
synonym: "LIGPUBES (related)" RELATED []
xref: PATO:0001320
is_a: TO:0002748 ! ligule morphology trait

[Term]
id: TO:0002750
name: ligule margin pubescence
def: "A ligule morphology trait (TO:0002748) which isthe extent of pubescence (presence of hairs)  on the margin of a ligule (PO:0020105)." [Gramene:pankaj_jaiswal, PO:0020105, TO:Laurel_Cooper]
comment: Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down.
synonym: "LIGMPUBES (related)" RELATED []
synonym: "ligule margin hairiness (exact)" EXACT []
xref: PATO:0001320
is_a: TO:0002748 ! ligule morphology trait

[Term]
id: TO:0002751
name: inflorescence branch arrangement
alt_id: TO:0002752
def: "An inflorescence morphology trait (TO:0000373) which is the arrangement of inflorescence branches (PO:0009081)." [Gramene:pankaj_jaiswal, PO:0009081, TO:moorel]
synonym: "INFLBRARANGE (related)" RELATED []
synonym: "panicle branch arrangement (related)" RELATED []
is_a: TO:0000050 ! inflorescence branching

[Term]
id: TO:0002753
name: arrangement of inflorescence primary branch
def: "An inflorescence branch arrangement (TO:0002751) trait which is the arrangement of primary branches in an inflorescence (PO:0009049)." [Gramene:pankaj_jaiswal, PO:0009049, TO:moorel]
synonym: "arrangement of primary branch (related)" RELATED []
synonym: "PBRARANGE (related)" RELATED []
synonym: "primary branch arrangement (related)" RELATED []
is_a: TO:0002751 ! inflorescence branch arrangement

[Term]
id: TO:0002754
name: inflorescence axis texture
def: "An inflorescence axis morphology trait (TO:0000782) which is the texture of an inflorescence axis (PO:0020122)." [Gramene:pankaj_jaiswal, PO:0020122, TO:Laurel_Cooper]
comment: Refers to the texture (PATO:0000150): A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics) of an inflorescence axis (PO:0020122).
synonym: "INFLOAXISTEX (related)" RELATED []
synonym: "panicle axis texture (exact)" EXACT []
synonym: "PNAXISTEX (related)" RELATED []
xref: PATO:0000150
is_a: TO:0000782 ! inflorescence axis morphology trait

[Term]
id: TO:0002755
name: cell organelle development trait
def: "Trait(s) associated with phenotypes observed for abnormal development of cell organelle structure and its biogenesis." [Gramene:pankaj_jaiswal]
is_a: TO:0002686 ! cell growth and development trait

[Term]
id: TO:0002756
name: shoot growth angle
def: "Estimated by the angle of inclination of the main shoot/stem against the soil/growth medium surface." [Gramene:pankaj_jaiswal]
synonym: "culm habit (related)" RELATED []
synonym: "CULMHAB (related)" RELATED []
synonym: "growth habit (related)" RELATED []
synonym: "stem habit (related)" RELATED []
synonym: "STEMHAB (related)" RELATED []
is_a: TO:0000398 ! whole plant morphology trait

[Term]
id: TO:0002757
name: flag leaf length
def: "A flag leaf morphology trait (TO:0000832) which is the length of the flag leaf (PO:0020103)." [Gramene:pankaj_jaiswal, PO:0020103, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
synonym: "FLFLG (exact)" EXACT []
xref: PATO:0000122
is_a: TO:0000832 ! flag leaf morphology trait

[Term]
id: TO:0002758
name: flag leaf lamina width
def: "Actual measurements, in centimeters of the widest portion of the flag leaf lamina." [Gramene:pankaj_jaiswal]
synonym: "flag leaf blade width (exact)" EXACT []
synonym: "FLFLWD (exact)" EXACT []
is_a: TO:0002720 ! leaf lamina width

[Term]
id: TO:0002759
name: grain number trait
def: "A fruit number trait (TO:0000894) which is the number of grains (caryopsis fruit; PO:0030104) in an infructescence (PO:0006342)." [Gramene:pankaj_jaiswal, PO:0006342, PO:0030104, TO:moorel] {comment="TO:Laurel_Cooper"}
comment: Refer to has number of (PATO:0001555): The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
synonym: "GRNB (related)" RELATED []
synonym: "kernel number (related)" RELATED []
xref: PATO:0001555
is_a: TO:0000894 ! fruit number trait

[Term]
id: TO:0002761
name: length of grain with hull
def: "A grain length (TO:0000734) with hull." [Gramene:pankaj_jaiswal]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
synonym: "HULGRLG (related)" RELATED []
synonym: "hulled grain length (related)" RELATED []
synonym: "hulled-grain length (related)" RELATED []
is_a: TO:0000734 ! grain length

[Term]
id: TO:0002762
name: hulled grain width
def: "A grain width (TO:0000975) with caryopsis hull (PO:0006000)." [Gramene:pankaj_jaiswal, TO:moorel]
comment: Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
synonym: "HULGRWD (related)" RELATED []
synonym: "hulled grain curved width (related)" RELATED []
synonym: "hulled grain width (related)" RELATED []
synonym: "width of grain with hull (exact)" EXACT []
xref: PATO:0000921
is_a: TO:0000975 ! grain width

[Term]
id: TO:0002763
name: curved length of grain with hull
def: "Average length of the curved surface of grain with hull (hulled)." [Gramene:pankaj_jaiswal]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
synonym: "HULGRCURVLG (related)" RELATED []
synonym: "hulled grain curved length (related)" RELATED []
xref: PATO:0000122
is_a: TO:0002745 ! grain curved length

[Term]
id: TO:0002764
name: surface area of grain with hull
def: "The average surface area of the grain with hull (hulled) in a grass fruit caryopsis." [Gramene:pankaj_jaiswal]
synonym: "HULGRSURFAR (related)" RELATED []
synonym: "hulled-grain surface area (related)" RELATED []
is_a: TO:0002739 ! fruit surface area

[Term]
id: TO:0002765
name: hulled grain volume
def: "A grain volume (TO:0001108) which is the volume of a grain with a caryopsis hull (PO:0006000)." [Gramene:pankaj_jaiswal]
synonym: "HULGRVOL (exact)" EXACT []
synonym: "hulled caryopsis volume (related)" RELATED []
is_a: TO:0001108 ! grain volume

[Term]
id: TO:0002766
name: ligule margin shape
def: "A ligule morphology trait (TO:0002748) which is a shape of a margin of a ligule (PO:0020105)." [Gramene:pankaj_jaiswal, PO:0020105, TO:Laurel_Cooper]
comment: Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's\nratios of distances between its features (points, edges, surfaces and\nalso holes etc).
synonym: "LIGMSHP (related)" RELATED []
xref: PATO:0000052
is_a: TO:0002748 ! ligule morphology trait

[Term]
id: TO:0002767
name: rhizome formation
def: "A shoot system growth and development trait (TO:0000654) which is the formation of a rhizome (PO:0004542)." []
synonym: "RHZFORM (related)" RELATED []
is_a: TO:0000654 ! shoot system growth and development trait

[Term]
id: TO:0002768
name: spikelet length
def: "A spikelet morphology trait (TO:0000657) which is the length of a spikelet (PO:0009051)." [Gramene:pankaj_jaiswal, PO:0009051, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
synonym: "SPKLG (related)" RELATED []
xref: PATO:0000122
is_a: TO:0000657 ! spikelet morphology trait

[Term]
id: TO:0003000
name: stem fresh weight
def: "A stem weight trait (TO:0000952) which is the fresh weight of a stem (PO:0009047)." [TO:malaporte]
is_a: TO:0000952 ! stem weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003001
name: stem dry weight
def: "A stem weight trait (TO:0000952) which is the dry weight of a stem (PO:0009047)." [TO:malaporte]
is_a: TO:0000952 ! stem weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003002
name: infructescence fresh weight
def: "An infructescence weight trait (TO:0000583) which is the fresh weight of an infructescence (PO:0006342)." [TO:malaporte]
synonym: "bunch fresh weight (narrow)" NARROW []
is_a: TO:0000583 ! infructescence weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003003
name: infructescence dry weight
def: "An infructescence weight trait (TO:0000583) which is the dry weight of an infructescence (PO:0006342)." [TO:malaporte]
synonym: "bunch dry weight (narrow)" NARROW []
is_a: TO:0000583 ! infructescence weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003004
name: fruit fresh weight
def: "A fruit weight trait (TO:0002746) that is the fresh weight of a fruit (PO:0009001)." [TO:malaporte]
is_a: TO:0002746 ! fruit weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003005
name: fruit dry weight
def: "A fruit weight trait (TO:0002746) that is the dry weight of a fruit (PO:0009001)." [TO:malaporte]
is_a: TO:0002746 ! fruit weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003006
name: second order infructescence morphology trait
def: "A reproductive shoot system morphology trait (TO:0000786) which is a quality of a second order infructescence (PO:0025241)." [TO:malaporte]
is_a: TO:0000786 ! reproductive shoot system morphology trait
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003007
name: hand fresh weight
def: "A second order infructescence morphology trait (TO:0003006) which is the fresh weight of a second order infructescence (PO:0025241)." [TO:malaporte]
is_a: TO:0003006 ! second order infructescence morphology trait
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003008
name: hand dry weight
def: "A second order infructescence morphology trait (TO:0003006) which is the dry weight of a second order infructescence (PO:0025241)." [TO:malaporte]
is_a: TO:0003006 ! second order infructescence morphology trait
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003009
name: tuberous root tuber weight
def: "A tuberous root tuber morphology trait (TO:1000007) which is the weight of a tuberous root tuber (PO:0025476)." [TO:malaporte]
synonym: "storage root weight (exact)" EXACT []
is_a: TO:1000007 ! tuberous root tuber morphology trait
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003010
name: tuberous root tuber fresh weight
def: "A tuberous root tuber weight trait (TO:0003009) which is the fresh weight of a tuberous root tuber (PO:0025476)." [TO:malaporte]
synonym: "storage root fresh weight (exact)" EXACT []
is_a: TO:0003009 ! tuberous root tuber weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003011
name: tuberous root tuber dry weight
def: "A tuberous root tuber weight trait (TO:0003009) which is the dry weight of a tuberous root tuber (PO:0025476)." [TO:malaporte]
synonym: "storage root dry weight (exact)" EXACT []
is_a: TO:0003009 ! tuberous root tuber weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003012
name: subterranean shoot axis tuber fresh weight
def: "A subterranean shoot axis tuber weight trait (TO:0000746) which is the fresh weight of a subterranean shoot axis tuber (PO:0004547)." [TO:malaporte]
synonym: "tuber fresh weight (exact)" EXACT []
is_a: TO:0000746 ! subterranean shoot axis tuber mass
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003013
name: subterranean shoot axis tuber dry weight
def: "A subterranean shoot axis tuber weight trait (TO:0000746) which is the dry weight of a subterranean shoot axis tuber (PO:0004547)." [TO:malaporte]
synonym: "tuber dry weight (exact)" EXACT []
is_a: TO:0000746 ! subterranean shoot axis tuber mass
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003014
name: grain fresh weight
def: "A grain weight (TO:0000919) which is the fresh weight of a grain (caryopsis fruit; PO:0030104), including the caryopsis hull (PO:0006000)." [TO:malaporte]
is_a: TO:0000919 ! grain weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003015
name: grain dry weight
def: "A grain weight (TO:0000919) which is the dry weight of a grain (caryopsis fruit; PO:0030104), including the caryopsis hull (PO:0006000)." [TO:malaporte]
is_a: TO:0000919 ! grain weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003016
name: 100-grain fresh weight
def: "A 100-grain weight (TO:0000269) which is the fresh weight of a sample of 100 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000)." [TO:malaporte]
is_a: TO:0000269 ! 100-grain weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003017
name: 100-grain dry weight
def: "A grain weight (TO:0000269) which is the dry weight of a sample of 100 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000)." [TO:malaporte]
is_a: TO:0000269 ! 100-grain weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003018
name: 1000-grain fresh weight
def: "A grain weight (TO:0000382) which is the fresh weight of a sample of 1000 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000)." [TO:malaporte]
is_a: TO:0000382 ! 1000-grain weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003019
name: 1000-grain dry weight
def: "A grain weight (TO:0000382) which is the dry weight of a sample of 1000 grains (caryopsis fruit; PO:0030104), with the caryopsis hull (PO:0006000)." [TO:malaporte]
is_a: TO:0000382 ! 1000-grain weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003020
name: panicle fresh weight
def: "An infructescence weight trait (TO:0000014) which is the fresh weight of a panicle inflorescence (PO:0030123)." [TO:malaporte]
is_a: TO:0000014 ! panicle weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003021
name: panicle dry weight
def: "An infructescence weight trait (TO:0000014) which is the dry weight of a panicle inflorescence (PO:0030123)." [TO:malaporte]
is_a: TO:0000014 ! panicle weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003022
name: ear fresh weight
def: "An ear infructescence weight trait (TO:0000923) that is the fresh weight of an ear infructescence (PO:0025597)." [TO:malaporte]
is_a: TO:0000923 ! ear weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003023
name: ear dry weight
def: "An ear infructescence weight trait (TO:0000923) that is the dry weight of an ear infructescence (PO:0025597)." [TO:malaporte]
is_a: TO:0000923 ! ear weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003024
name: cob fresh weight
def: "A cob weight trait (TO:0000922) which is the fresh weight of a cob (ear infructescence axis; PO:0025623)." [TO:malaporte]
is_a: TO:0000922 ! cob weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003025
name: cob dry weight
def: "A cob weight trait (TO:0000922) which is the dry weight of a cob (ear infructescence axis; PO:0025623)." [TO:malaporte]
is_a: TO:0000922 ! cob weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003026
name: spike weight
def: "An inflorescence weight (TO:0000803) trait which is the weight of a spike inflorescence (PO:0030117)." [TO:malaporte]
is_a: TO:0000803 ! inflorescence weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003027
name: spike fresh weight
def: "A spike weight (TO:0003026) trait which is the fresh weight of a spike inflorescence (PO:0030117)." [TO:malaporte]
is_a: TO:0003026 ! spike weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003028
name: spike dry weight
def: "A spike weight (TO:0003026) trait which is the dry weight of a spike inflorescence (PO:0030117)." [TO:malaporte]
is_a: TO:0003026 ! spike weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003029
name: legume fruit dry weight
def: "A legume fruit weight trait (TO:0001092) which is the dry weight of a legume fruit (PO:0030100)." [TO:malaporte]
synonym: "pod dry weight (exact)" EXACT []
is_a: TO:0001092 ! legume fruit weight
relationship: part_of TO:0001142 ! legume fruit yield trait
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003030
name: legume fruit fresh weight
def: "A legume fruit weight trait (TO:0001092) which is the fresh weight of a legume fruit (PO:0030100)." [TO:malaporte]
synonym: "pod fresh weight (exact)" EXACT []
is_a: TO:0001092 ! legume fruit weight
relationship: part_of TO:0001142 ! legume fruit yield trait
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003031
name: pepo fruit weight
def: "A pepo fruit morphology trait (TO:0001098) which is the weight of a pepo fruit (PO:0030111)." [TO:malaporte]
synonym: "banana finger weight (exact)" EXACT []
is_a: TO:0001098 ! pepo fruit morphology trait
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003032
name: pepo fruit fresh weight
def: "A pepo fruit weight trait (TO:0003031) which is the fresh weight of a pepo fruit (PO:0030111)." [TO:malaporte]
synonym: "banana finger fresh weight (exact)" EXACT []
is_a: TO:0003031 ! pepo fruit weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003033
name: pepo fruit dry weight
def: "A pepo fruit weight trait (TO:0003031) which is the dry weight of a pepo fruit (PO:0030111)." [TO:malaporte]
synonym: "banana finger dry weight (exact)" EXACT []
is_a: TO:0003031 ! pepo fruit weight
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003034
name: leaf moisture content
def: "A moisture content trait (TO:0000228) which is the amount of moisture of a leaf (PO:0025034)." [TO:malaporte]
is_a: TO:0000228 ! moisture content trait
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003035
name: stem moisture content
def: "A moisture content trait (TO:0000228) which is the amount of moisture in a stem (PO:0009047)." [TO:malaporte]
is_a: TO:0000228 ! moisture content trait
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003036
name: root moisture content
def: "A moisture content trait (TO:0000228) which is the amount of moisture in a root (PO:0009005)." [TO:malaporte]
is_a: TO:0000228 ! moisture content trait
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003037
name: whole plant moisture content
def: "A moisture content trait (TO:0000228) which is the amount of moisture in the whole plant (PO:0000003)." [TO:malaporte]
is_a: TO:0000228 ! moisture content trait
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003038
name: shoot system moisture content
def: "A moisture content trait (TO:0000228) which is the amount of moisture in the shoot system (PO:0009006)." [TO:malaporte]
is_a: TO:0000228 ! moisture content trait
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003039
name: infructescence moisture content
def: "A moisture content trait (TO:0000228) which is the amount of moisture in a infructescence (PO:0006342)." [TO:malaporte]
synonym: "bunch moisture content (narrow)" NARROW []
is_a: TO:0000228 ! moisture content trait
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003040
name: pepo fruit moisture content
def: "A fruit moisture content trait (TO:0000686) which is the amount of moisture in a pepo fruit (PO:0030111)." [TO:malaporte]
synonym: "banana finger moisture content (exact)" EXACT []
is_a: TO:0000686 ! fruit moisture content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003041
name: second order infructescence moisture content
def: "A moisture content trait (TO:0000228) which is the amount of moisture in a second order infructescence (PO:0025241)." [TO:malaporte]
synonym: "banana hand moisture content (exact)" EXACT []
is_a: TO:0003039 ! infructescence moisture content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003042
name: tuberous root tuber moisture content
def: "A moisture content trait (TO:0000228) which is the amount of moisture in a tuberous root tuber (PO:0025476)." [TO:malaporte]
synonym: "storage root moisture content (exact)" EXACT []
is_a: TO:0000228 ! moisture content trait
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003043
name: subterranean shoot axis tuber moisture content
def: "A moisture content trait (TO:0000228) which is the amount of moisture in a subterranean shoot axis tuber (PO:0004547)." [TO:malaporte]
synonym: "tuber moisture content (exact)" EXACT []
is_a: TO:0000228 ! moisture content trait
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003044
name: legume fruit moisture content
def: "A fruit moisture content trait (TO:0000686) which is the amount of moisture in a legume fruit (PO:0030100)." [TO:malaporte]
synonym: "pod moisture content (exact)" EXACT []
is_a: TO:0000686 ! fruit moisture content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003045
name: panicle moisture content
def: "A moisture content trait (TO:0000228) which is the amount of moisture in a panicle inflorescence (PO:0030123)." [TO:malaporte]
is_a: TO:0000228 ! moisture content trait
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003046
name: ear moisture content
def: "A moisture content trait (TO:0000228) which is the amount of moisture in a ear infructescence (PO:0025597)." [TO:malaporte]
is_a: TO:0003039 ! infructescence moisture content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003047
name: cob moisture content
def: "A moisture content trait (TO:0000228) which is the amount of moisture in an ear infructescence axis (PO:0025623)." [TO:malaporte]
is_a: TO:0000228 ! moisture content trait
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003048
name: spike moisture content
def: "A moisture content trait (TO:0000228) which is the amount of moisture in a spike inflorescence (PO:0030117)." [TO:malaporte]
is_a: TO:0000228 ! moisture content trait
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003049
name: leaf potassium content
def: "A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a leaf (PO:0025034)." [TO:malaporte]
xref: CHEBI:29103
is_a: TO:0000609 ! potassium content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003050
name: stem potassium content
def: "A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a stem (PO:0009047)." [TO:malaporte]
xref: CHEBI:29103
is_a: TO:0000609 ! potassium content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003051
name: infructescence potassium content
def: "A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in an infructescence (PO:0006342)." [TO:malaporte]
synonym: "bunch potassium content (narrow)" NARROW []
xref: CHEBI:29103
is_a: TO:0000609 ! potassium content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003052
name: pepo fruit potassium content
def: "A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a pepo fruit (PO:0030111)." [TO:malaporte]
synonym: "banana finger potassium content (exact)" EXACT []
xref: CHEBI:29103
is_a: TO:0000609 ! potassium content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003053
name: second order infructescence potassium content
def: "A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a second order infructescence (PO:0025241)." [TO:malaporte]
synonym: "banana hand potassium content (exact)" EXACT []
xref: CHEBI:29103
is_a: TO:0000609 ! potassium content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003054
name: tuberous root tuber potassium content
def: "A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a tuberous root tuber (PO:0025476)." [TO:malaporte]
synonym: "storage root potassium content (exact)" EXACT []
xref: CHEBI:29103
is_a: TO:0000609 ! potassium content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003055
name: subterranean shoot axis tuber potassium content
def: "A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a subterranean shoot axis tuber (PO:0004547)." [TO:malaporte]
synonym: "tuber potassium content (exact)" EXACT []
xref: CHEBI:29103
is_a: TO:0000609 ! potassium content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003056
name: grain potassium content
def: "A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a caryopsis fruit (PO:0030104)." [TO:malaporte]
xref: CHEBI:29103
is_a: TO:0000609 ! potassium content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003057
name: panicle potassium content
def: "A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a panicle inflorescence (PO:0030123)." [TO:malaporte]
xref: CHEBI:29103
is_a: TO:0000609 ! potassium content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003058
name: ear potassium content
def: "A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a ear infructescence (PO:0025597)." [TO:malaporte]
xref: CHEBI:29103
is_a: TO:0000609 ! potassium content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003059
name: cob potassium content
def: "A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a ear infructescence axis (PO:0025623)." [TO:malaporte]
xref: CHEBI:29103
is_a: TO:0000609 ! potassium content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003060
name: spike potassium content
def: "A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a spike inflorescence (PO:0030117)." [TO:malaporte]
xref: CHEBI:29103
is_a: TO:0000609 ! potassium content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003061
name: legume fruit potassium content
def: "A potassium content trait (TO:0000609) which is the amount of potassium cation (CHEBI:29103) in a legume fruit (PO:0030100)." [TO:malaporte]
synonym: "pod potassium content (exact)" EXACT []
xref: CHEBI:29103
is_a: TO:0000609 ! potassium content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003062
name: stem nitrogen content
def: "A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a stem (PO:0009047)." [TO:malaporte]
xref: CHEBI:51143
is_a: TO:0020093 ! nitrogen content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003063
name: infructescence nitrogen content
def: "A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in an infructescence (PO:0006342)." [TO:malaporte]
synonym: "bunch nitrogen content (narrow)" NARROW []
xref: CHEBI:51143
is_a: TO:0020093 ! nitrogen content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003064
name: pepo fruit nitrogen content
def: "A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a pepo fruit (PO:0030111)." [TO:malaporte]
synonym: "banana finger nitrogen content (exact)" EXACT []
xref: CHEBI:51143
is_a: TO:0020093 ! nitrogen content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003065
name: second order infructescence nitrogen content
def: "A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a second order infructescence (PO:0025241)." [TO:malaporte]
synonym: "banana hand nitrogen content (exact)" EXACT []
xref: CHEBI:51143
is_a: TO:0020093 ! nitrogen content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003066
name: tuberous root tuber nitrogen content
def: "A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a tuberous root tuber (PO:0025476)." [TO:malaporte]
synonym: "storage root nitrogen content (exact)" EXACT []
xref: CHEBI:51143
is_a: TO:0020093 ! nitrogen content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003067
name: subterranean shoot axis tuber nitrogen content
def: "A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a subterranean shoot axis tuber (PO:0004547)." [TO:malaporte]
synonym: "tuber nitrogen content (exact)" EXACT []
xref: CHEBI:51143
is_a: TO:0020093 ! nitrogen content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003068
name: grain nitrogen content
def: "A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a caryopsis fruit (PO:0030104)." [TO:malaporte]
xref: CHEBI:51143
is_a: TO:0020093 ! nitrogen content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003069
name: panicle nitrogen content
def: "A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a panicle inflorescence (PO:0030123)." [TO:malaporte]
xref: CHEBI:51143
is_a: TO:0020093 ! nitrogen content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003070
name: ear nitrogen content
def: "A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a ear infructescence (PO:0025597)." [TO:malaporte]
xref: CHEBI:51143
is_a: TO:0020093 ! nitrogen content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003071
name: cob nitrogen content
def: "A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a ear infructescence axis (PO:0025623)." [TO:malaporte]
xref: CHEBI:51143
is_a: TO:0020093 ! nitrogen content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003072
name: spike nitrogen content
def: "A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a spike inflorescence (PO:0030117)." [TO:malaporte]
xref: CHEBI:51143
is_a: TO:0020093 ! nitrogen content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003073
name: legume fruit nitrogen content
def: "A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a legume fruit (PO:0030100)." [TO:malaporte]
synonym: "pod nitrogen content (exact)" EXACT []
xref: CHEBI:51143
is_a: TO:0020093 ! nitrogen content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003074
name: root nitrogen content
def: "A nitrogen content trait (TO:0020093) which is the amount of nitrogen (CHEBI:51143) in a root (PO:0009005)." [TO:malaporte]
xref: CHEBI:51143
is_a: TO:0020093 ! nitrogen content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003076
name: stem phosphorus content
def: "A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a stem (PO:0009047)." [TO:malaporte]
xref: CHEBI:33467
is_a: TO:0020114 ! shoot system phosphorus content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003077
name: infructescence phosphorus content
def: "A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in an infructescence (PO:0006342)." [TO:malaporte]
synonym: "bunch phosphorus content (narrow)" NARROW []
xref: CHEBI:33467
is_a: TO:0020114 ! shoot system phosphorus content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003078
name: pepo fruit phosphorus content
def: "A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a pepo fruit (PO:0030111)." [TO:malaporte]
synonym: "banana finger phosphorus content (exact)" EXACT []
xref: CHEBI:33467
is_a: TO:0020114 ! shoot system phosphorus content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003079
name: second order infructescence phosphorus content
def: "A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a second order infructescence (PO:0025241)." [TO:malaporte]
synonym: "banana hand phosphorus content (exact)" EXACT []
xref: CHEBI:33467
is_a: TO:0020114 ! shoot system phosphorus content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003080
name: tuberous root tuber phosphorus content
def: "A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a tuberous root tuber (PO:0025476)." [TO:malaporte]
synonym: "storage root phosphorus content (exact)" EXACT []
xref: CHEBI:33467
is_a: TO:0001024 ! phosphorus content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003081
name: subterranean shoot axis tuber phosphorus content
def: "A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a subterranean shoot axis tuber (PO:0004547)." [TO:malaporte]
synonym: "tuber phosphorus content (exact)" EXACT []
xref: CHEBI:33467
is_a: TO:0001024 ! phosphorus content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003082
name: grain phosphorus content
def: "A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a caryopsis fruit (PO:0030104)." [TO:malaporte]
xref: CHEBI:33467
is_a: TO:0001024 ! phosphorus content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003083
name: panicle phosphorus content
def: "A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a panicle inflorescence (PO:0030123)." [TO:malaporte]
xref: CHEBI:33467
is_a: TO:0001024 ! phosphorus content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003084
name: ear phosphorus content
def: "A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a ear infructescence (PO:0025597)." [TO:malaporte]
xref: CHEBI:33467
is_a: TO:0001024 ! phosphorus content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003085
name: cob phosphorus content
def: "A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a ear infructescence axis (PO:0025623)." [TO:malaporte]
xref: CHEBI:33467
is_a: TO:0001024 ! phosphorus content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003086
name: spike phosphorus content
def: "A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a spike inflorescence (PO:0030117)." [TO:malaporte]
xref: CHEBI:33467
is_a: TO:0001024 ! phosphorus content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003087
name: legume fruit phosphorus content
def: "A phosphorus content trait (TO:0001024) which is the amount of phosphorus cation (CHEBI:33467) in a legume fruit (PO:0030100)." [TO:malaporte]
synonym: "pod phosphorus content (exact)" EXACT []
xref: CHEBI:33467
is_a: TO:0001024 ! phosphorus content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003088
name: leaf carbon content
def: "A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a leaf (PO:0025034)." [TO:malaporte]
xref: CHEBI:27594
is_a: TO:0000466 ! carbon content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003089
name: stem carbon content
def: "A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a stem (PO:0009047)." [TO:malaporte]
xref: CHEBI:27594
is_a: TO:0000466 ! carbon content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003090
name: root carbon content
def: "A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a root (PO:0009005)." [TO:malaporte]
xref: CHEBI:27594
is_a: TO:0000466 ! carbon content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003091
name: infructescence carbon content
def: "A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in an infructescence (PO:0006342)." [TO:malaporte]
synonym: "bunch carbon content (narrow)" NARROW []
xref: CHEBI:27594
is_a: TO:0000466 ! carbon content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003092
name: pepo fruit carbon content
def: "A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a pepo fruit (PO:0030111)." [TO:malaporte]
synonym: "banana finger carbon content (exact)" EXACT []
xref: CHEBI:27594
is_a: TO:0000466 ! carbon content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003093
name: second order infructescence carbon content
def: "A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a second order infructescence (PO:0025241)." [TO:malaporte]
synonym: "banana hand carbon content (exact)" EXACT []
xref: CHEBI:27594
is_a: TO:0000466 ! carbon content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003094
name: tuberous root tuber carbon content
def: "A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a tuberous root tuber (PO:0025476)." [TO:malaporte]
synonym: "storage root carbon content (exact)" EXACT []
xref: CHEBI:27594
is_a: TO:0000466 ! carbon content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003095
name: subterranean shoot axis tuber carbon content
def: "A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a subterranean shoot axis tuber (PO:0004547)." [TO:malaporte]
synonym: "tuber carbon content (exact)" EXACT []
xref: CHEBI:27594
is_a: TO:0000466 ! carbon content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003096
name: grain carbon content
def: "A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a caryopsis fruit (PO:0030104)." [TO:malaporte]
is_a: TO:0000466 ! carbon content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003097
name: panicle carbon content
def: "A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a panicle inflorescence (PO:0030123)." [TO:malaporte]
xref: CHEBI:27594
is_a: TO:0000466 ! carbon content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003098
name: ear carbon content
def: "A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a ear infructescence (PO:0025597)." [TO:malaporte]
xref: CHEBI:27594
is_a: TO:0000466 ! carbon content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003099
name: cob carbon content
def: "A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a ear infructescence axis (PO:0025623)." [TO:malaporte]
xref: CHEBI:27594
is_a: TO:0000466 ! carbon content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003100
name: spike carbon content
def: "A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a spike inflorescence (PO:0030117)." [TO:malaporte]
xref: CHEBI:27594
is_a: TO:0000466 ! carbon content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003101
name: legume fruit carbon content
def: "A carbon content trait (TO:0000466) which is the amount of carbon (CHEBI:27594) in a legume fruit (PO:0030100)." [TO:malaporte]
synonym: "pod carbon content (exact)" EXACT []
xref: CHEBI:27594
is_a: TO:0000466 ! carbon content
created_by: http://orcid.org/0000-0002-8461-9745

[Term]
id: TO:0003500
name: plant gall morphology trait
def: "A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a plant gall (PO:0025626)." [TO:Laurel_Cooper]
comment: Plant galls are formed in response to some biotic stress (PSO:0000004), such as damage caused by an insect, mite, microorganism or other plant.
xref: TO_GIT:505
is_a: TO:0000836 ! multi-tissue plant structure morphology trait
created_by: https://orcid.org/0000-0002-6379-8932
creation_date: 2024-03-11T21:05:28Z

[Term]
id: TO:0005001
name: linoleic acid content
def: "A fatty acid content trait (TO:0001170) which is the amount of linoleic acid in a plant structure (PO:0009011)." [PO:cooperl|wikipedia:Linoleic_acid]
comment: Linoleic acid (LA) is a polyunsaturated, omega−6 fatty acid, which is essential for human health. The main plant sources of LA are seed and nut oils such as soybean oil, where the normal values for linoleic acid content are ~ 50%.
synonym: "(9Z,12Z)-Octadecadienoic acid content (exact)" EXACT []
synonym: "(Z,Z)-9,12-octadecadienoic acid content (exact)" EXACT []
synonym: "9-cis,12-cis-Octadecadienoic acid content (exact)" EXACT []
synonym: "9Z,12Z-octadecadienoic acid content (exact)" EXACT []
synonym: "cis,cis-linoleic acid content (exact)" EXACT []
synonym: "high linoleic oil content (narrow)" NARROW []
synonym: "linoleic oil content (exact)" EXACT []
xref: CHEBI:17351
is_a: TO:0001170 ! fatty acid content trait

[Term]
id: TO:0005002
name: oleic acid content
def: "A fatty acid content trait (TO:0001170) which is the amount of oleic acid in a plant structure (PO:0009011)." [PO:cooperl|wikipedia:Oleic_acid]
comment: Oleic acid is a monounsaturated omega-9 fatty acid that occurs naturally in various animal and vegetable fats and oils. The main plant sources of oleic acid are seed and nut oils such as soybean oil, where the normal values for oleic acid content are ~ 15%.
synonym: "(9Z)-octadec-9-enoic acid content (exact)" EXACT []
synonym: "(9Z)-Octadecenoic acid content (exact)" EXACT []
synonym: "(Z)-Octadec-9-enoic acid content (exact)" EXACT []
synonym: "cis-9-octadecenoic acid content (exact)" EXACT []
synonym: "high oleic oil content (narrow)" NARROW []
synonym: "mid oleic oil content (narrow)" NARROW []
xref: CHEBI:16196
is_a: TO:0001170 ! fatty acid content trait

[Term]
id: TO:0005003
name: stearic acid content
def: "A fatty acid content trait (TO:0001170) which is the amount of stearic acid in a plant structure (PO:0009011)." [PO:cooperl|wikipedia:Stearic_acid]
comment: Stearic acid is a saturated fatty acid with an 18-carbon chain that occurs naturally in various animal and vegetable fats.
synonym: "high stearic oil content (narrow)" NARROW []
synonym: "low stearic oil content (narrow)" NARROW []
synonym: "n-octadecanoic acid content (exact)" EXACT []
synonym: "octadecanoic acid content (exact)" EXACT []
synonym: "octadecoic acid content (exact)" EXACT []
xref: CHEBI:28842
is_a: TO:0001170 ! fatty acid content trait

[Term]
id: TO:0005004
name: OBSOLETE omega-3 fatty acid content
def: "OBSOLETE The omega-3 fatty acid content in or extracted from a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
comment: Omega-3 fatty acid (CHEBI:25681) is a polyunsaturated fatty acid (CHEBI:26208). There are four subtypes of omega-3 fatty acids, namely, alpha-licanic acid (CHEBI:28771), all-cis-docosa-4,7,10,13,16,19-hexaenoic acid (CHEBI:28125), all-cis-icosa-5,8,11,14,17-pentaenoic acid and alpha-linolenic acid (CHEBI:27432).
xref: CHEBI:25681
is_obsolete: true

[Term]
id: TO:0005005
name: alpha-linolenic acid content
def: "The alpha-linolenic acid content in or extracted from a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
comment: According to the Codex Alimentarium, the FAO international standards for food product specifications, the normal values may differ depending on the source plant. For example, in soybean oil the normal values for alpha-linolenic acid content are 4.5% - 11%.
synonym: "(9,12,15)-linolenic acid content (exact)" EXACT []
synonym: "(9Z,12Z,15Z)-Octadecatrienoic acid content (exact)" EXACT []
synonym: "(Z,Z,Z)-9,12,15-octadecatrienoic acid content (exact)" EXACT []
synonym: "9,12,15-Octadecatrienoic acid content (exact)" EXACT []
synonym: "9-cis,12-cis,15-cis-octadecatrienoic acid content (exact)" EXACT []
synonym: "all-cis-9,12,15-octadecatrienoic acid content (exact)" EXACT []
synonym: "cis,cis,cis-9,12,15-octadecatrienoic acid content (exact)" EXACT []
xref: CHEBI:27432
is_a: TO:1000074 ! linolenic acid content

[Term]
id: TO:0005006
name: glyphosate sensitivity
def: "An assay to determine the sensitivity (tolerance or susceptibility) exhibited by a plant or a group of plants (population) towards the applied herbicide glyphosate." [Gramene:pankaj_jaiswal]
comment: It is expected that the herbicide application must not affect the agronomic yield, if any.
synonym: "glyphosate susceptibility (narrow)" NARROW []
synonym: "glyphosate tolerance (narrow)" NARROW []
is_a: TO:0000058 ! herbicide sensitivity

[Term]
id: TO:0005007
name: glufosinate sensitivity
def: "An assay to determine the sensitivity (tolerance or susceptibility) exhibited by a plant or a group of plants (population) towards the applied herbicide glufosinate." [Gramene:pankaj_jaiswal]
comment: It is expected that the herbicide application must not affect the agronomic yield, if any.
synonym: "glufosinate susceptibility (narrow)" NARROW []
synonym: "glufosinate tolerance (narrow)" NARROW []
is_a: TO:0000058 ! herbicide sensitivity

[Term]
id: TO:0005008
name: acetolactate synthase inhibitor sensitivity
def: "An assay to determine the sensitivity (tolerance or susceptibility) exhibited by a plant or a group of plants (population) towards the applied herbicide class of acetolactate synthase inhibitor." [Gramene:pankaj_jaiswal]
comment: It is expected that the herbicide application must not affect the agronomic yield, if any.
synonym: "acetolactate synthase inhibitor susceptibility (narrow)" NARROW []
synonym: "acetolactate synthase inhibitor tolerance (narrow)" NARROW []
synonym: "ALS inhibitor susceptibility (narrow)" NARROW []
synonym: "ALS inhibitor tolerance (narrow)" NARROW []
is_a: TO:0000058 ! herbicide sensitivity

[Term]
id: TO:0005009
name: European corn borer response trait
def: "A Lepidoptera damage response trait (TO:0001162) which is caused by a European corn borer (Ostrinia nubilalis)." [Gramene:pankaj_jaiswal, NCBITaxon:29057, TO:Laurel_Cooper]
synonym: "ECB resistance (exact)" EXACT []
is_a: TO:0001162 ! Lepidoptera damage response trait

[Term]
id: TO:0005010
name: rootworm beetle response
def: "A Coleoptera damage response trait (TO:0001160) which is caused by a rootworm beetle (Diabrotica spp.)." [Gramene:pankaj_jaiswal, NCBITaxon:50385, TO:Laurel_Cooper]
is_a: TO:0001160 ! Coleoptera damage response trait

[Term]
id: TO:0006001
name: salt tolerance
def: "Tolerance to the high salt content in the growth medium." [Gramene:pankaj_jaiswal]
synonym: "SALTTL (exact)" EXACT []
is_a: TO:0000429 ! salt response

[Term]
id: TO:0006002
name: proline content
def: "Amino acid proline content in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
is_a: TO:0002673 ! amino acid content

[Term]
id: TO:0006003
name: oligosaccharide content
def: "Amount of oligosaccharides present in the plant or its parts." [Gramene:pankaj_jaiswal]
comment: Oligosaccharide is a carbohydrate polymer that on hydrolysis yields a small number of monosaccharide molecules.
is_a: TO:0000291 ! carbohydrate content

[Term]
id: TO:0006004
name: raffinose content
def: "Amount of raffinose present in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
is_a: TO:0006003 ! oligosaccharide content

[Term]
id: TO:0006005
name: fructose content
def: "Amount of fructose present in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
is_a: TO:0000307 ! hexose content

[Term]
id: TO:0006006
name: monosaccharide content
def: "Amount of monosaccharide present in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
is_a: TO:0000291 ! carbohydrate content

[Term]
id: TO:0006007
name: polysaccharide content
def: "Amount of polysaccharide present in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal]
is_a: TO:0000291 ! carbohydrate content

[Term]
id: TO:0006008
name: OBSOLETE carbohydrate derivative content
def: "OBSOLETE A carbohydrate content (TO:0000291) which is the amount of carbohydrate derivatives (CHEBI:63299) in a plant structure (PO:0009011)." []
xref: CHEBI:63299
is_obsolete: true

[Term]
id: TO:0006009
name: lodicule morphology trait
def: "A plant organ morphology trait (TO:0000736) which is a quality of a lodicule (PO:0009036) and its parts." [Gramene:pankaj_jaiswal, PO:0009036, TO:moorel]
xref: TO_GIT:105
is_a: TO:0000736 ! plant organ morphology trait

[Term]
id: TO:0006010
name: lodicule number
def: "A lodicule morphology trait (TO:0006009) which is the average number of lodicules (PO:0009036) per grass flower (floret) in a study." [Gramene:pankaj_jaiswal, PO:0009036, TO:moorel]
is_a: TO:0000274 ! spikelet floret morphology trait

[Term]
id: TO:0006011
name: lodicule shape
def: "A lodicule morphology trait (TO:0006009) which is the shape of a lodicule (PO:0009036)." [Gramene:pankaj_jaiswal, PO:0009036, TO:moorel]
comment: Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
xref: PATO:0000052
is_a: TO:0006009 ! lodicule morphology trait

[Term]
id: TO:0006012
name: carpel morphology trait
def: "A megasporophyll morphology trait (TO:0000867) which is a quality of a carpel (PO:0009030)." [Gramene:pankaj_jaiswal, PO:0009030, TO:moorel]
is_a: TO:0000867 ! megasporophyll morphology trait

[Term]
id: TO:0006013
name: carpel number
def: "A carpel morphology trait (TO:0006012) which is the number of carpels (PO:0009030) in the gynoecium (PO:0009062)." [Gramene:pankaj_jaiswal, PO:0009030, PO:0009062, TO:moorel]
is_a: TO:0006012 ! carpel morphology trait

[Term]
id: TO:0006014
name: phyllotaxy
def: "A leaf morphology trait (TO:0000748) which is the arrangement of the leaves on the shoot of a plant." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "leaf arrangement (exact)" EXACT []
is_a: TO:0000748 ! leaf morphology trait

[Term]
id: TO:0006015
name: plant tissue development trait
def: "Traits associated with observing effects on the development of a given tissue type." [Gramene:pankaj_jaiswal]
is_a: TO:0000928 ! plant structure growth and development trait

[Term]
id: TO:0006016
name: meristem tissue development trait
def: "An assay to determine the variation in the  meristematic tissue development." [Gramene:pankaj_jaiswal]
is_a: TO:0006015 ! plant tissue development trait

[Term]
id: TO:0006017
name: meristem identity
def: "Trait to determine the variation or effect on the establishment of meristem identity or determinacy." [Gramene:pankaj_jaiswal]
synonym: "meristem determinacy (exact)" EXACT []
is_a: TO:0006016 ! meristem tissue development trait

[Term]
id: TO:0006018
name: organ identity
def: "Trait associated with observing effects on the establishment of organ identity." [Gramene:pankaj_jaiswal]
comment: Identity is considered to be the aggregate of characteristics by which a structure is recognized.
is_a: TO:0000927 ! plant organ growth and development trait

[Term]
id: TO:0006019
name: floral organ identity
def: "Trait associated with observing effects on the establishment of floral organ identity." [Gramene:pankaj_jaiswal]
is_a: TO:0006018 ! organ identity

[Term]
id: TO:0006020
name: shoot apical meristem development
def: "An assay to associate observing effects on the development of shoot apical (SAM) meristem." [Gramene:pankaj_jaiswal]
is_a: TO:0002638 ! shoot meristem development

[Term]
id: TO:0006021
name: vegetative to reproductive phase transition trait
def: "Trait associated with the transition of vegetative growth phase to the reproductive growth phase." [Gramene:pankaj_jaiswal]
comment: Usually observed at the time of transition of shoot apical meristem (a vegetative meristem) to the inflorescence apical meristem (a reproductive meristem).
is_a: TO:0000654 ! shoot system growth and development trait

[Term]
id: TO:0006022
name: floral organ development trait
def: "Traits associated with observing effects on the development of the floral organ and its parts." [Gramene:pankaj_jaiswal]
is_a: TO:0000622 ! flower development trait

[Term]
id: TO:0006023
name: lodicule development trait
def: "Traits associated with observing effects on the development of the lodicule in a grass flower (floret)." [Gramene:pankaj_jaiswal]
is_a: TO:0006022 ! floral organ development trait

[Term]
id: TO:0006024
name: ectopic lodicule development
def: "Ectopic development of lodicule in a grass flower (floret)." [Gramene:pankaj_jaiswal]
is_a: TO:0002613 ! reproductive homeotic development trait
is_a: TO:0006023 ! lodicule development trait

[Term]
id: TO:0006025
name: flower bract development trait
def: "Traits associated with observing effects on the development of the floral bracts." [Gramene:pankaj_jaiswal]
is_a: TO:0006022 ! floral organ development trait

[Term]
id: TO:0006026
name: flower bract number
def: "A flower morphology trait (TO:0000499) which is the number of flower bracts (TO:0006026)." [Gramene:pankaj_jaiswal]
is_a: TO:0000499 ! flower morphology trait

[Term]
id: TO:0006027
name: inflorescence bract development trait
def: "An inflorescence development trait (TO:0000621) which is the quality of the development of an inflorescence bract (PO:0009054)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
is_a: TO:0000621 ! inflorescence development trait

[Term]
id: TO:0006028
name: inflorescence bract number
def: "Number of given type of bracts in a inflorescence." [Gramene:pankaj_jaiswal]
is_a: TO:0000373 ! inflorescence morphology trait

[Term]
id: TO:0006029
name: glume number
def: "Number of glumes in an inflorescence of grass, sedge or similar plant." [Gramene:pankaj_jaiswal]
is_a: TO:0006028 ! inflorescence bract number

[Term]
id: TO:0006030
name: spikelet meristem identity
def: "Trait associated to observed effect on the establishment of spikelet meristem identity or determinacy." [Gramene:pankaj_jaiswal]
is_a: TO:0000621 ! inflorescence development trait
is_a: TO:0002638 ! shoot meristem development
is_a: TO:0006017 ! meristem identity

[Term]
id: TO:0006031
name: inflorescence size
def: "An inflorescence morphology trait (TO:0000373) which is the variation in size of inflorescence (PO:0009049)." [Gramene:pankaj_jaiswal, PO:0009049, TO:moorel]
comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
xref: PATO:0000117
is_a: TO:0000373 ! inflorescence morphology trait

[Term]
id: TO:0006032
name: panicle inflorescence size
def: "A panicle inflorescence morphology trait (TO:0000847) which is the variation in size of panicle inflorescence (PO:0030123)." [Gramene:pankaj_jaiswal, TO:moorel]
is_a: TO:0000847 ! panicle inflorescence morphology trait

[Term]
id: TO:0006033
name: floret number per spikelet
def: "Number of florets in a grass spikelet." [Gramene:pankaj_jaiswal]
synonym: "FLNBPSPK (related)" RELATED []
is_a: TO:0000670 ! floret number

[Term]
id: TO:0006034
name: tertiary branch number
def: "A tertiary branching of inflorescence (TO:0006035) trait which is the number of tertiary branches in an inflorescence (PO:0009049)." [Gramene:pankaj_jaiswal, PO:0009049, TO:moorel]
is_a: TO:0006035 ! tertiary branching of inflorescence

[Term]
id: TO:0006035
name: tertiary branching of inflorescence
def: "An inflorescence branching (TO:0000050) trait which is the extent of tertiary branching that usually determines the shape and compactness of the inflorescence (PO:0009049) (such as in rice panicle)." [Gramene:pankaj_jaiswal, PO:0009049, TO:moorel]
is_a: TO:0000050 ! inflorescence branching

[Term]
id: TO:0006036
name: stem elongation
def: "Elongation of the stem." [Gramene:pankaj_jaiswal]
comment: Alternative associated traits are stem length (TO:0000576) and shoot elongation rate (TO:0000368).
is_a: TO:0000654 ! shoot system growth and development trait

[Term]
id: TO:0006037
name: carpel shape
def: "A carpel morphology trait (TO:0006012) which is the shape of a carpel (PO:0009030)." [Gramene:pankaj_jaiswal, PO:0009030, TO:moorel]
comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
xref: PATO:0000052
is_a: TO:0006012 ! carpel morphology trait

[Term]
id: TO:0006038
name: floral organ number
def: "A floral organ morphology trait (TO:0000862) which is the number of floral organ (PO:0025395) types in a flower (PO:0009046)." [Gramene:pankaj_jaiswal, PO:0009046, TO:moorel]
is_a: TO:0000862 ! floral organ morphology trait

[Term]
id: TO:0006039
name: petal number
def: "A petal morphology trait (TO:0000863) which is the number of petals (PO:0009032) in a flower (PO:0009049)." [Gramene:pankaj_jaiswal, PO:0009032, PO:0009049, TO:moorel]
is_a: TO:0000863 ! petal morphology trait

[Term]
id: TO:0006040
name: sepal number
def: "A sepal morphology trait (TO:0000864) which is the number of the sepals (PO:0009031) in a flower (PO:0009049)." [Gramene:pankaj_jaiswal, PO:0009031, PO:0009049, TO:moorel]
is_a: TO:0000864 ! sepal morphology trait

[Term]
id: TO:0006041
name: tepal number
def: "A tepal morphology trait (TO:0000865) which is the number of the tepals (PO:0009033) in a flower (PO:0009049)." [Gramene:pankaj_jaiswal, PO:0009033, PO:0009049, TO:moorel]
is_a: TO:0000865 ! tepal morphology trait

[Term]
id: TO:0006042
name: lithium content
def: "A mineral and ion content trait (TO:0000465) which is the lithium cation (CHEBI:49713) composition in a plant structure (PO:0009011)." [Gramene:Karthik, TO:Laurel_Cooper]
comment: May be assayed for per gram fresh weight.
is_a: TO:0000465 ! mineral and ion content trait
created_by: jaiswalp
creation_date: 2010-10-25T10:36:57Z

[Term]
id: TO:0006043
name: boron content
def: "A mineral and ion content trait (TO:0000465) which is the boron cation (CHEBI:30168) composition in a plant structure (PO:0009011)." [Gramene:Karthik, TO:Laurel_Cooper]
is_a: TO:0000465 ! mineral and ion content trait
created_by: jaiswalp
creation_date: 2010-10-25T04:49:08Z

[Term]
id: TO:0006044
name: magnesium content
def: "A mineral and ion content trait (TO:0000465) which is the magnesium cation (CHEBI:18420) composition in a plant structure (PO:0009011)." [Gramene:Karthik, TO:Laurel_Cooper]
is_a: TO:0000465 ! mineral and ion content trait
created_by: jaiswalp
creation_date: 2010-10-25T04:51:26Z

[Term]
id: TO:0006045
name: phosphorus concentration
def: "A phosphorus content (TO:0001024) which is the concentration of phosphorus (CHEBI:26082) in some plant structure (PO:0009011)" [Gramene:Karthik]
xref: CHEBI:26082
is_a: TO:0001024 ! phosphorus content
created_by: jaiswalp
creation_date: 2010-10-25T04:51:26Z

[Term]
id: TO:0006046
name: sulfur content
def: "A mineral and ion content trait (TO:0000465) which is the sulfur cation (CHEBI:29832) composition in a plant structure (PO:0009011)." [Gramene:Karthik, TO:Laurel_Cooper]
is_a: TO:0000465 ! mineral and ion content trait
created_by: jaiswalp
creation_date: 2010-10-25T10:36:57Z

[Term]
id: TO:0006047
name: calcium content trait
def: "A mineral and ion content trait (TO:0000465) which is the calcium cation (CHEBI:39123) composition in a plant structure (PO:0009011)." [Gramene:Karthik, TO:Laurel_Cooper]
is_a: TO:0000465 ! mineral and ion content trait
created_by: jaiswalp
creation_date: 2010-10-25T04:54:15Z

[Term]
id: TO:0006048
name: manganese concentration
def: "A manganese content (TO:0020091) which is the concentration of manganese (CHEBI:25154) in some plant structure (PO:0009011)" [Gramene:Karthik]
xref: CHEBI:25154
is_a: TO:0020091 ! manganese content
created_by: jaiswalp
creation_date: 2010-10-25T04:55:34Z

[Term]
id: TO:0006049
name: iron concentration
def: "An iron content (TO:0020089) which is the concentration of iron cation (CHEBI:24875) in a plant structure (PO:0009011)" [Gramene:Karthik]
xref: CHEBI:24873
is_a: TO:0020089 ! iron content trait
created_by: jaiswalp
creation_date: 2010-10-25T04:56:30Z

[Term]
id: TO:0006050
name: cobalt concentration
def: "A cobalt content trait (TO:0001044) which is the concentration of cobalt cation (CHEBI:23336) in a plant structure (PO:0009011)." [Gramene:Karthik, TO:Laurel_Cooper]
is_a: TO:0001044 ! cobalt content trait
created_by: jaiswalp
creation_date: 2010-10-25T10:36:57Z

[Term]
id: TO:0006051
name: nickel content
def: "A mineral and ion content trait (TO:0000465) which is the nickel cation (CHEBI:25516) composition in a plant structure (PO:0009011)." [Gramene:Karthik, TO:Laurel_Cooper]
is_a: TO:0000465 ! mineral and ion content trait
created_by: jaiswalp
creation_date: 2010-10-25T04:58:31Z

[Term]
id: TO:0006052
name: copper concentration
def: "A copper content (TO:0020092) which is the concentration of copper (CHEBI:23377) in a plant structure (PO:0009011)." [Gramene:Karthik] {comment="TO:Laurel_Cooper"}
xref: CHEBI:23377
is_a: TO:0020092 ! copper content trait
created_by: jaiswalp
creation_date: 2010-10-25T04:59:17Z

[Term]
id: TO:0006053
name: zinc concentration
def: "A zinc content (TO:0020090) which is the concentration of zinc (CHEBI:63056) in some plant structure (PO:0009011)" [CHEBI:63056, Gramene:Karthik]
is_a: TO:0020090 ! zinc content trait
created_by: jaiswalp
creation_date: 2010-10-25T04:59:26Z

[Term]
id: TO:0006054
name: arsenic content trait
def: "A mineral and ion content trait (TO:0000465) which is the arsenic cation (CHEBI:35829) composition in a plant structure (PO:0009011)." [Gramene:Karthik, TO:Laurel_Cooper]
is_a: TO:0000465 ! mineral and ion content trait
created_by: jaiswalp
creation_date: 2010-10-25T04:59:32Z

[Term]
id: TO:0006055
name: selenium content
def: "A mineral and ion content trait (TO:0000465) which is the selenium ion (CHEBI:60250) composition in a plant structure (PO:0009011)." [Gramene:Karthik, TO:Laurel_Cooper]
is_a: TO:0000465 ! mineral and ion content trait
created_by: jaiswalp
creation_date: 2010-10-25T04:59:38Z

[Term]
id: TO:0006056
name: molybdenum content
def: "A mineral and ion content trait (TO:0000465) which is the molybdenum cation (CHEBI:37239) composition in a plant structure (PO:0009011)." [Gramene:Karthik, TO:Laurel_Cooper]
is_a: TO:0000465 ! mineral and ion content trait
created_by: jaiswalp
creation_date: 2010-10-25T04:59:53Z

[Term]
id: TO:0006057
name: cuperous ion concentration
def: "The total Cu2+ ion concentration measured in a given volume of a plant structure (PO:0009011) or plant extract." [Gramene:pankaj_jaiswal]
is_a: TO:0006052 ! copper concentration
created_by: jaiswalp
creation_date: 2010-10-25T05:04:14Z

[Term]
id: TO:0006058
name: cuperic ion concentration
def: "The total Cu3+ ion concentration measured in a given volume of a plant structure (PO:0009011) or plant extract." [Gramene:pankaj_jaiswal]
is_a: TO:0006052 ! copper concentration
created_by: jaiswalp
creation_date: 2010-10-25T05:04:19Z

[Term]
id: TO:0006059
name: cadmium content trait
def: "A mineral and ion content trait (TO:0000465) which is the cadmium cation (CHEBI:63063) composition in a plant structure (PO:0009011)." [Gramene:Karthik, TO:Laurel_Cooper]
is_a: TO:0000465 ! mineral and ion content trait
created_by: jaiswalp
creation_date: 2010-10-25T10:36:57Z

[Term]
id: TO:0006060
name: leaf chlorosis
alt_id: TO:0020113
def: "A leaf color trait (TO:0006060) describing the yellowing of leaves, due to insufficient production of chlorophyll." [Gramene:Karthik, TO:moorel]
comment: Leaf surface affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic tissue.
is_a: TO:0000326 ! leaf color
created_by: jaiswalp
creation_date: 2010-10-25T05:13:05Z

[Term]
id: TO:0006061
name: days to germinate
def: "A plant phenological trait (TO:0000933) which is the number of days taken from the day of sowing to the first emergence of cotyledons or hypocotyl." [Gramene:curators]
is_a: TO:0000933 ! plant phenological trait
created_by: jaiswalp
creation_date: 2010-10-25T05:23:52Z

[Term]
id: TO:0006062
name: plant width
def: "The average width of a plant measured across an axis such as the main stem/stalk." [Gramene:pankaj_jaiswal]
is_a: TO:0000398 ! whole plant morphology trait
created_by: jaiswalp
creation_date: 2010-10-25T05:27:37Z

[Term]
id: TO:0006063
name: leaf margin serrated
def: "A leaf margin morphology trait (TO:0002635) which is a notched or grooved leaf margin (PO:0020128)." [Gramene:curators, PO:0020128, TO:Laurel_Cooper]
comment: Refer to serrated (PATO:0001206): A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex.
xref: PATO:0001206
is_a: TO:0002635 ! leaf margin morphology trait
created_by: jaiswalp
creation_date: 2010-10-25T05:30:17Z

[Term]
id: TO:0006064
name: rolled leaf
def: "Leaf lamina rolled into a tube like structure." [Gramene:Karthik]
is_a: TO:0000655 ! leaf growth and development trait
created_by: jaiswalp
creation_date: 2010-10-25T05:34:19Z

[Term]
id: TO:0006065
name: seedling hypocotyl length
def: "A seedling hypocotyl morphology trait (TO:0000769) which is the length of a seedling hypocotyl (PO:0025291)." [Gramene:Karthik, PO:0025291, TO:Laurel_Cooper]
xref: PATO:0000122
xref: TO_GIT:64
is_a: TO:0000769 ! seedling hypocotyl morphology trait
created_by: jaiswalp
creation_date: 2010-10-25T05:36:01Z

[Term]
id: TO:0006066
name: leaf trichome density
def: "A leaf pubescence (TO:0002722) trait which is the density of leaf trichomes (PO:0006504)." [Gramene:curators, TO:Laurel_Cooper]
is_a: TO:0002722 ! leaf pubescence
created_by: jaiswalp
creation_date: 2010-10-25T05:37:25Z

[Term]
id: TO:0006067
name: aphid response trait
def: "A Hemiptera damage response trait (TO:0001164) caused by insects of the Aphididae family." [Gramene:pankaj_jaiswal, NCBITaxon:27482, TO:Laurel_Cooper]
is_a: TO:0001164 ! Hemiptera damage response trait
created_by: jaiswalp
creation_date: 2010-10-25T05:38:56Z

[Term]
id: TO:0006068
name: germinability in dark
def: "Measure of the seed's germination ability in dark." [Gramene:curators]
is_a: TO:0000653 ! seed growth and development trait
is_a: TO:0000931 ! seed quality trait
created_by: jaiswalp
creation_date: 2010-10-25T05:42:12Z

[Term]
id: TO:0006069
name: DSDS50
def: "A measure of seed dormancy defined as the days of seed dry storage required to reach 50% germination (DSDS50)." [Gramene:Karthik]
is_a: TO:0000931 ! seed quality trait
is_a: TO:0000933 ! plant phenological trait
created_by: jaiswalp
creation_date: 2010-10-25T05:44:20Z

[Term]
id: TO:0007000
name: seed volume
def: "A seed morphology trait (TO:0000184) which is the volume of a seed (PO:0009010)." [PO:0009010, TO:Laurel_Cooper]
comment: Refer to volume (PATO:0000918): A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies.
xref: TO_GIT:489
is_a: TO:0000184 ! seed morphology trait
relationship: part_of TO:0000391 ! seed size
created_by: cooperl
creation_date: 2022-09-08

[Term]
id: TO:0010001
name: percent germination
def: "The percentage of seeds that germinate against the total number of seeds planted." [Gramene:pankaj_jaiswal]
is_a: TO:0000250 ! plant vigor trait

[Term]
id: TO:0011001
name: leaf lamina color distribution
def: "Describes the way different colors, their hue and shades are distributed on a leaf lamina and its parts such as leaf margin, leaf tip, leaf veins." [Gramene:pankaj_jaiswal]
synonym: "LFLCLDIST (related)" RELATED []
is_a: TO:0000299 ! leaf lamina color

[Term]
id: TO:0011002
name: inflorescence primary branch attitude
def: "An inflorescence primary branch morphology trait (TO:0000846) which is the attitude of a second order inflorescence axis (PO:0006321) in terms of upright and drooping characters." [Gramene:pankaj_jaiswal, PO:0006321, TO:moorel]
comment: Associated to the trait inflorescence type (TO:0000267).
synonym: "INFLPBRAATT (related)" RELATED []
is_a: TO:0000846 ! inflorescence primary branch morphology trait

[Term]
id: TO:0011003
name: inflorescence axis color
def: "An inflorescence axis morphology trait (TO:0000782) which is the color of an inflorescence axis (PO:0020122)." [Gramene:pankaj_jaiswal, PO:0020122, TO:moorel]
comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
synonym: "INFLAXISCL (related)" RELATED []
xref: PATO:0000014
is_a: TO:0000782 ! inflorescence axis morphology trait
relationship: part_of TO:0000581 ! inflorescence color

[Term]
id: TO:0011004
name: inflorescence branch color
def: "An inflorescence branch morphology trait (TO:0000784) which is the color of the inflorescence branch (PO:0009081)." [Gramene:pankaj_jaiswal, PO:0009081, TO:moorel]
comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts.
synonym: "INFLBRACL (related)" RELATED []
synonym: "panicle branch color (related)" RELATED []
xref: PATO:0000014
is_a: TO:0000784 ! inflorescence branch morphology trait
relationship: part_of TO:0000581 ! inflorescence color

[Term]
id: TO:0011005
name: penultimate leaf length
def: "Length of the leaf penultimate to the first leaf below the inflorescence." [Gramene:pankaj_jaiswal]
comment: In case of cereal crop plants such as rice, corn, wheat etc., first leaf below the inflorescence or the last leaf on the shoot is called the flag leaf. Penultimate leaf is the one below flag leaf.
synonym: "PENLFLG (related)" RELATED []
synonym: "second leaf length (related)" RELATED []
is_a: TO:0000135 ! leaf length

[Term]
id: TO:0011006
name: penultimate leaf lamina width
def: "Lamina width of the leaf penultimate to the first leaf below the inflorescence." [Gramene:pankaj_jaiswal]
comment: In case of cereal crop plants such as rice, corn, wheat etc., first leaf below the inflorescence or the last leaf on the shoot is called the flag leaf. Penultimate leaf is the one below flag leaf.
synonym: "PENLFLWD (related)" RELATED []
synonym: "second leaf width (related)" RELATED []
is_a: TO:0002720 ! leaf lamina width

[Term]
id: TO:0011007
name: awn width
def: "An awn morphology trait (TO:0002718) which is the width of the awn (PO:0025349)." [Gramene:pankaj_jaiswal, PO:0025349, TO:moorel]
comment: Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
synonym: "AWNWD (related)" RELATED []
xref: PATO:0000921
is_a: TO:0002718 ! awn morphology trait

[Term]
id: TO:0011008
name: stigma length
def: "A floral organ length (TO:0002614) that is the length of the stigma (PO:0009073)." [Gramene:pankaj_jaiswal]
synonym: "STIGLG (related)" RELATED []
is_a: TO:0002614 ! floral organ length

[Term]
id: TO:0011009
name: style length
def: "A floral organ length (TO:0002614) that is the length of the style (PO:0009074)." [Gramene:pankaj_jaiswal]
synonym: "silk length (narrow)" NARROW []
synonym: "STYLLG (related)" RELATED []
xref: PATO:0000122
xref: TO_GIT:113
is_a: TO:0002614 ! floral organ length

[Term]
id: TO:0011010
name: internode color in proxomity to colored node
def: "Color of the spatial section of the internode that is found proximal (next) to the colored node of a stem." [Gramene:pankaj_jaiswal]
synonym: "INCLPROXNDCL (related)" RELATED []
is_a: TO:0000426 ! stem internode color

[Term]
id: TO:0012001
name: leaf area index
def: "Leaf Area Index (LAI) is the ratio of total upper leaf surface of vegetation divided by the surface area of the land on which the vegetation grows." [TO:Laurel_Cooper, Wikipedia:Leaf_area_index]
comment: LAI is used to predict photosynthetic primary production and as a reference tool for crop growth. Measured on the plant canopy only.
is_a: TO:0000540 ! leaf area trait
created_by: jaiswalp
creation_date: 2011-12-09T01:27:39Z

[Term]
id: TO:0012002
name: leaf chlorophyll content
def: "A chlorophyll content trait (TO:0000495) which is the chlorophyll content of a leaf (PO:0025034)." [PO:0025034, TO:Laurel_Cooper]
xref: TO_GIT:275
is_a: TO:0000495 ! chlorophyll content
created_by: jaiswalp
creation_date: 2011-12-09T01:52:17Z

[Term]
id: TO:0012003
name: OBSOLETE chlorophyll content in an extract
def: "OBSOLETE" []
is_obsolete: true
replaced_by: 'TO:0000495'
created_by: jaiswalp
creation_date: 2011-12-09T01:54:09Z

[Term]
id: TO:0012004
name: quantum yield
def: "A chlorophyll fluorescence trait (TO:0012006) which is the efficiency of light energy conversion into chemical energy by plants." [TO:Laurel_Cooper, Wikipedia:quantum_yield]
synonym: "QY (related)" RELATED []
is_a: TO:0012006 ! chlorophyll fluorescence trait
created_by: jaiswalp
creation_date: 2011-12-09T02:09:21Z

[Term]
id: TO:0012005
name: OBSOLETE chlorophyll fluorescence induction kinetics
def: "OBSOLETE" []
synonym: "OJIP (related)" RELATED []
is_obsolete: true
created_by: jaiswalp
creation_date: 2011-12-09T02:09:52Z

[Term]
id: TO:0012006
name: chlorophyll fluorescence trait
def: "A biological process trait (TO:0000283) which is the release of excess energy through the emission of red light by chlorophyll molecules." [TO:Laurel_Cooper]
is_a: TO:0000283 ! biological process trait
created_by: jaiswalp
creation_date: 2011-12-09T02:12:03Z

[Term]
id: TO:0012007
name: OBSOLETE quantum yield determined by the light curve
def: "OBSOLETE" []
is_obsolete: true
created_by: jaiswalp
creation_date: 2011-12-09T02:13:21Z

[Term]
id: TO:0012008
name: OBSOLETE quantum yield at a given wavelength
def: "OBSOLETE" []
is_obsolete: true
created_by: jaiswalp
creation_date: 2011-12-09T02:16:09Z

[Term]
id: TO:0012009
name: OBSOLETE continuous fluorescence yield
def: "OBSOLETE" []
synonym: "F<sub>T</sub> (related)" RELATED []
is_obsolete: true
created_by: jaiswalp
creation_date: 2011-12-09T02:18:08Z

[Term]
id: TO:0012010
name: leaf area duration
def: "Leaf Area Duration (LAD) is the ratio of total upper leaf surface of vegetation divided by the surface area of the land on which the vegetation grows. Measured over time." [group:Crop_Ontology_Group]
synonym: "LAD (related)" RELATED []
is_a: TO:0000540 ! leaf area trait
created_by: jaiswalp
creation_date: 2011-12-09T02:28:13Z

[Term]
id: TO:0012011
name: leaf senescence rate
def: "Rate of loss of normal leaf color over time." [group:Crop_Ontology_Group]
is_a: TO:0000655 ! leaf growth and development trait
created_by: jaiswalp
creation_date: 2011-12-09T02:34:15Z

[Term]
id: TO:0012012
name: leaf senescence duration
def: "Time taken to lose normal leaf color." [group:Crop_Ontology_Group]
comment: In grasses often measured for flag or the second leaf from top.
is_a: TO:0000655 ! leaf growth and development trait
created_by: jaiswalp
creation_date: 2011-12-09T02:35:49Z

[Term]
id: TO:0020001
name: panicle inflorescence compactness
def: "A panicle inflorescence morphology trait (TO:0000847) which is the compactness of a panicle inflorescence (PO:0030123)." [TO:moorel]
comment: Refer to compact (PATO:0001485): A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together. Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
xref: PATO:0000052
xref: PATO:0001485
is_a: TO:0000847 ! panicle inflorescence morphology trait

[Term]
id: TO:0020002
name: grain weight to panicle weight ratio
def: "A grain yield trait (TO:0000396) which is the ratio of grain weight (TO:0000919) to panicle weight (TO:0000014)." [TO:Laurel_Cooper]
comment: Grain weight (TO:0000919) is a general parent term, covering the weights of various types of caryopsis fruits (PO:0030104), and doesn't specify if they are hulled or dehulled.
xref: TO_GIT:242
is_a: TO:0000396 ! grain yield trait

[Term]
id: TO:0020003
name: shoot system potassium content
def: "A potassium content trait (TO:0000609) which is the potassium cation (CHEBI:29103) composition in a shoot system (PO:0009006)." [Gramene:cwt, https://search.proquest.com/docview/1426182399, ICRIS:019, TO:Laurel_Cooper]
is_a: TO:0000609 ! potassium content

[Term]
id: TO:0020004
name: shoot system sodium content
def: "A sodium content trait (TO:0000608) which is the sodium cation (CHEBI:29101) composition in a shoot system (PO:0009006)." [Gramene:cwt, https://search.proquest.com/docview/1426182399, ICRIS:018, TO:Laurel_Cooper]
is_a: TO:0000608 ! sodium content

[Term]
id: TO:0020005
name: sorghum stem borer response trait
def: "A Lepidoptera damage response trait (TO:0001162) caused by a sorghum stem borer (Chilo partellus)." [Gramene:cwt6, NCBITaxon:236792, TO:Laurel_Cooper]
comment: Infections causes the appearance of small elongated holes in young whorl leaves, tunelling of earheads results in breakage or chaffy earheads affecting grain development.
is_a: TO:0001162 ! Lepidoptera damage response trait

[Term]
id: TO:0020006
name: OBSOLETE chickpea pod borer
def: "OBSOLETE" [TO:Laurel_Cooper]
is_obsolete: true

[Term]
id: TO:0020007
name: sorghum shoot fly response trait
def: "A Diptera damage response trait (TO:0001163) which is caused by a sorghum shoot fly (Atherigona soccata)." [Gramene:cwt6, NCBITaxon:305598, TO:Laurel_Cooper]
comment: Larval feeding results in central leaf wilting and drying, causing the typical deadheart symptom.
is_a: TO:0001163 ! Diptera damage response trait

[Term]
id: TO:0020008
name: sorghum grain mold disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Aspergillus spp and Penicillium spp." [Gramene:cwt, NCBITaxon:5052, TO:Laurel_Cooper]
comment: Trait is measured as extent of grain surface covered with mold.
is_a: TO:0001145 ! Ascomycete fungal disease response

[Term]
id: TO:0020009
name: sorghum rust disease response
def: "A Basidiomycete fungal disease response trait (TO:0001146) caused by Puccinia purpurea infection." [Gramene:cwt, ICRIS:049, NCBITaxon:684838, TO:Laurel_Cooper]
comment: Infection causes purple, red or tan flecks on both surfaces of leaves, leaving a reddish powder on fingers when passed over it.
is_a: TO:0001146 ! Basidiomycete fungal disease response

[Term]
id: TO:0020010
name: sorghum downy mildew response
def: "Causative agent: Peronospora sp." [Gramene:cwt, ICRIS:047, NCBITaxon:70742, TO:Laurel_Cooper]
comment: It causes abundant downy white growth on the under surfaces of infected portions of leaves during humid weather, mature infected leaves become necrotic and intervenal tissues disintegrate to give the typical shredded leaf symptom.
is_a: TO:0001144 ! Oomycete disease response

[Term]
id: TO:0020011
name: OBSOLETE chickpea botrytis grey mold response
def: "OBSOLETE" [TO:Laurel_Cooper]
is_obsolete: true

[Term]
id: TO:0020012
name: OBSOLETE chickpea fusarium wild resistance
def: "OBSOLETE" [TO:Laurel_Cooper]
is_obsolete: true

[Term]
id: TO:0020013
name: OBSOLETE chickpea colleotrichum blight response
def: "OBSOLETE" [TO:Laurel_Cooper]
is_obsolete: true

[Term]
id: TO:0020014
name: OBSOLETE chickpea ascochyta blight response
def: "OBSOLETE" [TO:Laurel_Cooper]
is_obsolete: true

[Term]
id: TO:0020015
name: sorghum leaf blight disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) in Sorghum bicolor (NCBITaxon:4558) caused by Exserohilum turcicum (Setosphaeria turcica)." [NCBITaxon:93612, TO:Laurel_Cooper]
xref: TO_GIT:69
is_a: TO:0001145 ! Ascomycete fungal disease response

[Term]
id: TO:0020016
name: seed texture
def: "A seed morphology trait (TO:0000184) which is the texture of a seed (PO:0009010)." [PO:0009010, TO:moorel]
comment: Refer to texture PATO:0000150: A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics.
xref: PATO:0000150
xref: TO_GIT:213
is_a: TO:0000184 ! seed morphology trait

[Term]
id: TO:0020017
name: seed coat spotted
def: "A seed coat pattern trait (TO:0000904) where the seed coat (PO:0009088) has colored spots." [PO:0009088, TO:moorel]
comment: Refer to spotted (PATO:0000333): A color pattern inhering in a bearer by virtue of bearer's being marked with a round area of different hue or degree of saturation.
xref: PATO:0000333
xref: TO_GIT:148
is_a: TO:0000904 ! seed coat pattern

[Term]
id: TO:0020018
name: tertiary shoot axis branch number
def: "A shoot axis branching trait (TO:0002639) which is the number of, or pattern of, branches arising from a tertiary shoot axis (branch; PO:0025073)." [TO:Laurel_Cooper]
is_a: TO:0002639 ! shoot axis branching

[Term]
id: TO:0020019
name: secondary shoot axis branch number
def: "A shoot axis branching trait (TO:0002639) which is the number of, or pattern of, branches arising from a secondary shoot axis (branch; PO:0025073)." [TO:Laurel_Cooper]
is_a: TO:0002639 ! shoot axis branching

[Term]
id: TO:0020020
name: stem branch number
def: "A shoot axis branching trait (TO:0002639) which is the number of or pattern of branches arising from a stem (PO:0009047)." []
synonym: "primary shoot axis branch number (exact)" EXACT []
is_a: TO:0000361 ! stem morphology trait
is_a: TO:0002639 ! shoot axis branching

[Term]
id: TO:0020021
name: OBSOLETE basal axillary tertiary branch number
def: "OBSOLETE" []
is_obsolete: true

[Term]
id: TO:0020022
name: OBSOLETE basal axillary secondary branch number
def: "OBSOLETE" []
is_obsolete: true

[Term]
id: TO:0020023
name: OBSOLETE basal axillary primary branch number
def: "OBSOLETE" []
is_obsolete: true

[Term]
id: TO:0020024
name: OBSOLETE basal axillary branch number
def: "OBSOLETE" []
is_obsolete: true

[Term]
id: TO:0020025
name: OBSOLETE apical axillary tertiary branch number
def: "OBSOLETE" []
is_obsolete: true

[Term]
id: TO:0020026
name: OBSOLETE apical axillary secondary branch number
def: "OBSOLETE" []
is_obsolete: true

[Term]
id: TO:0020027
name: OBSOLETE apical axillary primary branch number
def: "OBSOLETE" []
is_obsolete: true

[Term]
id: TO:0020028
name: OBSOLETE apical axillary branch number
def: "OBSOLETE" []
is_obsolete: true

[Term]
id: TO:0020029
name: leaf lamina pubscence length
def: "Length of pubescence (presence of hairs) on the leaf blade surface." [Gramene:cwt]
is_a: TO:0000055 ! leaf lamina pubescence

[Term]
id: TO:0020030
name: leaf lamina pubescence density
def: "Density of pubescence (presence of hairs) on the leaf blade surface." [Gramene:cwt]
is_a: TO:0000055 ! leaf lamina pubescence

[Term]
id: TO:0020031
name: leaf lamina margin pubescence length
def: "A leaf lamina margin pudescence (TO:0002723) trait which is the length of pubescence (presence of hairs) on the leaf lamina margin (PO:0025009)." [Gramene:cwt, PO:0025009, TO:moorel]
comment: Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
xref: PATO:0000122
xref: PATO:0001320
is_a: TO:0002723 ! leaf lamina margin pubescence

[Term]
id: TO:0020032
name: leaf lamina margin pubescence density
def: "A leaf lamina margin pubescence trait (TO:0002723) which is the density of pubescence (presence of hairs) on the leaf lamina margin (PO:0025009)." [Gramene:cwt6, PO:002009, TO:moorel]
comment: Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. Refer to density (PATO:0001019): A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size.
xref: PATO:0001019
xref: PATO:0001320
is_a: TO:0002723 ! leaf lamina margin pubescence

[Term]
id: TO:0020033
name: glume length
def: "A glume morphology trait (TO:0000869) which is the length of a glume (PO:0009039) measured in mm (millimeter)." [Gramene:cwt, IWIS:1420, PO:0009039, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
xref: PATO:0000122
is_a: TO:0000869 ! glume morphology trait

[Term]
id: TO:0020034
name: glume width
def: "A glume morphology trait (TO:0000869) with is the measurement of width of glume (PO:0009039) in mm (millimeter)." [Gramene:cwt, IWIS:1421, PO:0009039, TO:moorel]
comment: Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
xref: PATO:0000921
is_a: TO:0000869 ! glume morphology trait

[Term]
id: TO:0020035
name: glume pubescence density
def: "A glume pubescence (TO:0020036) trait which is the measurement of glume hairines density on outer side of sterile glume (PO:0009039)." [Gramene:cwt, IWIS:1422, PO:0009039, TO:moorel]
comment: Refer to density (PATO:0001019): A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size.
xref: PATO:0001019
is_a: TO:0020036 ! glume pubescence

[Term]
id: TO:0020036
name: glume pubescence
def: "A glume morphology trait (TO:0000869) which is the extent of pubescence  (presence of hairs)  on the glume (PO:0009039) surface." [Gramene:cwt, PO:0009039, TO:moorel]
comment: Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down.
xref: PATO:0001320
is_a: TO:0000869 ! glume morphology trait

[Term]
id: TO:0020037
name: glume pubescence length
def: "A glume pubescence (TO:0020036) which is the measurement of length of hairs on glume (PO:0009039)." [Gramene:cwt, IWIS:1423, PO:0009039, TO:moorel]
comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.
xref: PATO:0000122
is_a: TO:0020036 ! glume pubescence

[Term]
id: TO:0020038
name: glume waxiness
def: "A glume morphology trait (TO:0000869) which is the presence of wax on a glume (PO:0009039)." [Gramene:cwt, IWIS:1412, PO:0009039, TO:moorel]
comment: Refer to waxiness (PATO:0002381): A composition quality inhering in an bearer by virtue of the presence of long chain aliphatic lipids on the surface of an organism.
xref: PATO:0002381
is_a: TO:0000869 ! glume morphology trait

[Term]
id: TO:0020051
name: barley leaf scald disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Rhynchosporium secalis." [NCBITaxon:38038, T-CAP:Victoria_Blake, TO:Laurel_Cooper]
comment: Symptoms include, oval, water-soaked, blue-grey spots (1.0-1.5 cm long) developing into lesions with dry necrotic centers and dark brown margins. Lesions will coalesce under high infection levels and are not delimited by veins.
synonym: "scald (exact)" EXACT []
is_a: TO:0001145 ! Ascomycete fungal disease response
created_by: jaiswalp
creation_date: 2011-08-19T12:12:24Z

[Term]
id: TO:0020052
name: barley spot blotch disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by  Cochliobolus sativus (Bipolaris sorokiniana)." [NCBITaxon:45130, T-CAP:Victoria_Blake, TO:Laurel_Cooper]
comment: Symptoms include, uniform chocolate brown lesions that eventually merge forming irregular necrotic patches on leaves. Lesions may be surrounded by yellow zones of varying width.
synonym: "spot blotch (exact)" EXACT []
is_a: TO:0001145 ! Ascomycete fungal disease response
created_by: jaiswalp
creation_date: 2011-08-19T12:19:00Z

[Term]
id: TO:0020053
name: wheat spot blotch disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) in leaves (PO:0009025) caused by Cochliobolus sativus (Bipolaris sorokiniana)." [NCBITaxon:45130, T-CAP:Victoria_Blake, TO:Laurel_Cooper]
comment: Symptoms include, elongated to oval shaped dark brown lesions. Centers often lighten to dark brown or tan surrounded by an irregular dark brown ring.
synonym: "Helminthosporium leaf blotch (related)" RELATED []
is_a: TO:0001145 ! Ascomycete fungal disease response
created_by: jaiswalp
creation_date: 2011-08-19T12:21:53Z

[Term]
id: TO:0020054
name: barley stripe rust disease response
def: "A Basidiomycete fungal disease response trait (TO:0001146) caused by Puccinia striiformis f. sp. hordei infection." [NCBITaxon:376348, T-CAP:Victoria_Blake, TO:Laurel_Cooper]
comment: Symptoms: chlorotic flecks at the infection site initially appear, followed by yellow uredinia (spore masses) in prominent stripes along the leaf veins. Black telia (overseasoning structures) readily develop from uredinia as infected plants mature.
synonym: "BSR (exact)" EXACT []
synonym: "yellow rust (exact)" EXACT []
is_a: TO:0001146 ! Basidiomycete fungal disease response
created_by: jaiswalp
creation_date: 2011-08-19T12:25:00Z

[Term]
id: TO:0020055
name: wheat stripe rust disease response
def: "A Basidiomycete fungal disease response trait (TO:0001146) caused by Puccinia striiformis f. sp. tritici." [NCBITaxon:168172, T-CAP:Victoria_Blake, TO:Laurel_Cooper]
comment: Symptoms: pustules (spore masses) containing yellow to orange-yellow urediniospores form narrow stripes on leaves, leaf sheaths and glumes.
synonym: "yellow rust (broad)" BROAD []
is_a: TO:0001146 ! Basidiomycete fungal disease response
created_by: jaiswalp
creation_date: 2011-08-19T12:27:45Z

[Term]
id: TO:0020056
name: barley leaf rust disease response
def: "A Basidiomycete fungal disease response trait (TO:0001146) caused by Puccinia hordei infection." [NCBITaxon:27345, T-CAP:Victoria_Blake, TO:Laurel_Cooper]
comment: Symptoms: small round orange brown pustules producing a mass of orange-brown urediniospores on the upper leaf surfaces and leaf sheaths.
synonym: "brown rust (broad)" BROAD []
is_a: TO:0001146 ! Basidiomycete fungal disease response
created_by: jaiswalp
creation_date: 2011-08-19T12:29:57Z

[Term]
id: TO:0020057
name: wheat leaf rust disease response
def: "A Basidiomycete fungal disease response trait (TO:0001146) caused by Puccinia recondita f. sp. tritici (Puccinia triticina)." [NCBITaxon:208348, T-CAP:Victoria_Blake, TO:Laurel_Cooper]
comment: Symptoms: circular to slightly elliptical pustules containing masses of orange to orange-brown urediniospores on the leaf surfaces and leaf sheaths.
synonym: "brown rust (broad)" BROAD []
is_a: TO:0001146 ! Basidiomycete fungal disease response
created_by: jaiswalp
creation_date: 2011-08-19T12:31:09Z

[Term]
id: TO:0020058
name: barley common root rot response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Cochliobolus sativus (Bipolaris sorokiniana), Fusarium culmorum and Fusarium pseudograminearum." [NCBITaxon:101028, NCBITaxon:45130, NCBITaxon:5516, T-CAP:Victoria_Blake, TO:Laurel_Cooper]
comment: Symptoms: brown lesions on the roots, especially the subcrown internode. Under severe conditions, lesions can become nearly black with brown tissue extending into the crown and leaf sheaths. Stunted plants with reduced tillering and yield. Heads can be white with fewer kernels that are small and shriveled.
synonym: "crown rot (broad)" BROAD []
is_a: TO:0001145 ! Ascomycete fungal disease response
created_by: jaiswalp
creation_date: 2011-08-19T12:33:03Z

[Term]
id: TO:0020059
name: wheat common root rot response
def: "An Ascomycete fungal disease response trait (TO:0001145) in roots (PO:0009005) caused by Cochliobolus sativus (Bipolaris sorokiniana)." [NCBITaxon:45130, T-CAP:Victoria_Blake, TO:Laurel_Cooper]
comment: Symptoms: browning of the root, crown and basal culm tissues. Plants may lodge. White spikes can appear.
is_a: TO:0001145 ! Ascomycete fungal disease response
created_by: jaiswalp
creation_date: 2011-08-19T12:36:24Z

[Term]
id: TO:0020060
name: barley powdery mildew disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Blumeria graminis f. sp. hordei." [NCBITaxon:2867405, T-CAP:Victoria_Blake, TO:Laurel_Cooper]
comment: Symptoms: first visible signs are fuzzy white to pale grey tufts of mycelia and conidia on the upper surfaces of leaves and leaf sheaths (especially on lower leaves) and sometimes on the spikes. Older fungal tissue is yellowish grey and can be easily rubbed off.  Plant tissue becomes chlorotic or necrotic.  Spherical black cleistothecia may develop.
is_a: TO:0001145 ! Ascomycete fungal disease response
created_by: jaiswalp
creation_date: 2011-08-19T12:39:36Z

[Term]
id: TO:0020061
name: wheat powdery mildew disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Blumeria graminis f. sp. tritici." [NCBITaxon:34373, T-CAP:Victoria_Blake, TO:Laurel_Cooper]
comment: Symptoms: first visible signs are fuzzy white to pale grey tufts of mycelia and conidia on the upper surfaces of leaves and leaf sheaths (especially on lower leaves) and sometimes on the spikes. Older fungal tissue is yellowish grey and can be easily rubbed off. Plant tissue becomes chlorotic or necrotic. Spherical black cleistothecia may develop.
is_a: TO:0001145 ! Ascomycete fungal disease response
created_by: jaiswalp
creation_date: 2011-08-19T12:39:36Z

[Term]
id: TO:0020062
name: barley net form net blotch disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Pyrenophora teres f. teres." [NCBITaxon:97479, T-CAP:Victoria_Blake, TO:Laurel_Cooper]
comment: Symptoms: in adult plants, initial symptoms are small pinpoint to elliptical brown spots which expand to form narrow, tan to light brown lesions, often delimited by leaf veins. Within lesions, dark brown longitudinal and transverse striations appear forming a net-like pattern. In seedlings, greenish grey, water-soaked areas appear forming brown lesions with netted striations.
synonym: "NFNB (exact)" EXACT []
is_a: TO:0001145 ! Ascomycete fungal disease response
created_by: jaiswalp
creation_date: 2011-08-19T12:39:36Z

[Term]
id: TO:0020063
name: barley spot form net blotch disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Pyrenophora teres f. maculata." [NCBITaxon:97480, T-CAP:Victoria_Blake, TO:Laurel_Cooper]
comment: Symptoms: dark brown, circular to elliptical lesions surrounded by bands of chlorosis.
synonym: "SFNB (exact)" EXACT []
is_a: TO:0001145 ! Ascomycete fungal disease response
created_by: jaiswalp
creation_date: 2011-08-19T12:39:36Z

[Term]
id: TO:0020064
name: barley septoria disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Septoria passerinii (Zymoseptoria passerinii) and Stagonospora avenae f. sp. triticeae (Parastagonospora avenae f. sp. tritici)." [NCBITaxon:1047170, NCBITaxon:54790, T-CAP:Victoria_Blake]
comment: Symptoms: in seedlings, S. passerinii causes faint, yellowish areas that turn greenish gray then straw colored with time forming a distinct demarcation next to healthy green tissue.  On adult plants S. passerinii infection produces long, rectangular lesions delimited by veins that first appear graying then turn tan or straw colored. S. avenae f. sp. triticea produces yellow brown lesions that traverse veins and are shield or lens shaped. (Stagonospora avenae f. sp. triticeae - teleomorph: Phaeosphaeria avenaria f. sp. triticeae).
synonym: "SSLB (exact)" EXACT []
is_a: TO:0001145 ! Ascomycete fungal disease response
created_by: jaiswalp
creation_date: 2011-08-19T12:39:36Z

[Term]
id: TO:0020065
name: wheat septoria leaf blotch disease response
def: "An Ascomycete fungal disease response trait (TO:0001145) caused by Septoria tritici (Mycosphaerella graminicola), Septoria nodorum (Leptosphaeria nodorum) and/or Septoria avenae f. sp. triticeae (Leptosphaeria avenaria f. sp. triticeae)." [NCBITaxon:1047171, NCBITaxon:13684, NCBITaxon:54790, T-CAP:Victoria_Blake, TO:Laurel_Cooper]
comment: Symptoms: Initial infection sites tend to be irregular in shape, oval to elongated chlorotic spots or lesions. As these sites expand, the centers of the lesions become pale, straw colored, and slightly necrotic, often with numerous small black dots (pycnidia). The lesions of septoria tritici blotch tend to be linear and restricted laterally, while those of septoria nodorum blotch and septoria avenae blotch are more lens shaped. All above ground plant parts can be affected.
is_a: TO:0001145 ! Ascomycete fungal disease response
created_by: jaiswalp
creation_date: 2011-08-19T12:39:36Z

[Term]
id: TO:0020066
name: barley leaf streak resistance
def: "Causal agent: Xanthomonas translucens pv. translucens and pv. undulosa." [T-CAP:Victoria_Blake]
comment: Symptoms: small, light to pale green spots which later expand into linear streaks. Streaks can extend the entire length of the leaf, that will become translucent. Infected leaves will turn yellow then brown as it dies.
is_a: TO:0000315 ! bacterial disease response
created_by: jaiswalp
creation_date: 2011-08-19T12:58:34Z

[Term]
id: TO:0020067
name: barley yellow dwarf virus disease resistance
def: "Causal agent: The Barley Yellow Dwarf Viruses, Luteovirus (Group IV (+)ssRNA)." [T-CAP:Victoria_Blake]
comment: Symptoms: uneven blotches of bright yellow discoloration on the tips and margins of older leaves, eventually progressing down toward the base, covering the entire leaf within a few weeks.  Reduced internode elongation causes stunting with severe infection possibly.
synonym: "BYDV (exact)" EXACT []
is_a: TO:0000148 ! viral disease response trait
created_by: jaiswalp
creation_date: 2011-08-19T01:00:45Z

[Term]
id: TO:0020068
name: beta-glucan content
def: "Amount of beta-glucan present in a plant structure (PO:0009011) or product (e.g. malt)." [T-CAP:Victoria_Blake]
comment: Beta-Glucans are polysaccharides of D-glucose linked by beta-glycosidic bonds that vary by molecular mass, solubility, viscosity and 3D configuration.
is_a: TO:0000291 ! carbohydrate content
created_by: jaiswalp
creation_date: 2011-08-19T01:03:01Z

[Term]
id: TO:0020069
name: spike exsertion
def: "An inflorescence exsertion (TO:0001002) trait measured in distance from the base of the spike (PO:0030117) to the auricle (PO:0020106) of the flag leaf (PO:0020103)." [T-CAP:Victoria_Blake, TO:Laurel_Cooper]
is_a: TO:0001002 ! inflorescence exsertion
created_by: jaiswalp
creation_date: 2011-08-19T01:07:39Z

[Term]
id: TO:0020070
name: beta-glucanase activity trait
def: "Activity of beta-glucanase ((1,3-1,4)-beta-D-glucan, 4-glucanohydrolase), (EC:3.2.1.73) in the hydrolysis of beta-glucans." [GO:0042972, GO:0052736, T-CAP:Victoria_Blake]
is_a: TO:0000599 ! enzyme activity trait
created_by: jaiswalp
creation_date: 2011-08-19T01:10:26Z

[Term]
id: TO:0020071
name: beta-glucanase thermostability
def: "The ability of beta-glucanase to remain active under mashing (boiling grain in water) conditions during beer making." [T-CAP:Victoria_Blake]
comment: Beta-glucanase [(1-3,1-4)-beta-D-glucan, 4-glucanohydrolase], (E.C:3.2.1.73).
is_a: TO:0001070 ! brewing quality trait
created_by: jaiswalp
creation_date: 2011-08-19T01:18:25Z

[Term]
id: TO:0020072
name: residual beta-glucanase activity trait
def: "Activity of beta-glucanase in the barley wort (the boiled grain and water) during the beer making process." [T-CAP:Victoria_Blake]
comment: Beta-glucanase [(1-3,1-4)-beta-D-glucan, 4-glucanohydrolase], (E.C:3.2.1.73).
synonym: "residual beta-glucanase (broad)" BROAD []
is_a: TO:0001070 ! brewing quality trait
is_a: TO:0020070 ! beta-glucanase activity trait
created_by: jaiswalp
creation_date: 2011-08-19T01:20:23Z

[Term]
id: TO:0020073
name: barley wort protein concentration
def: "Concentration of protein in the wort after boiling the grain with water (mashing) in the beer making process." [T-CAP:Victoria_Blake]
synonym: "wort protein (broad)" BROAD []
is_a: TO:0000598 ! protein content
is_a: TO:0001070 ! brewing quality trait
created_by: jaiswalp
creation_date: 2011-08-19T01:24:05Z

[Term]
id: TO:0020074
name: barley wort color
def: "Color of the solution derived from boiling barley grain with water during the beer making process." [T-CAP:Victoria_Blake]
is_a: TO:0001070 ! brewing quality trait
created_by: jaiswalp
creation_date: 2011-08-19T01:27:42Z

[Term]
id: TO:0020075
name: barley malt protein
def: "Percent protein in the malt prior to mashing (boiling the grain with water to produce a wort) in the beer making process." [T-CAP:Victoria_Blake]
is_a: TO:0001070 ! brewing quality trait
created_by: jaiswalp
creation_date: 2011-08-19T01:29:00Z

[Term]
id: TO:0020076
name: phenolic compound content
def: "A metabolite content trait (TO:0000281) which is the amount of phenolics present in a plant structure (PO:0009011)." [T-CAP:Victoria_Blake]
comment: In barley it is evaluated in ex malt.
is_a: TO:0000281 ! metabolite content trait
created_by: jaiswalp
creation_date: 2011-08-19T01:29:58Z

[Term]
id: TO:0020077
name: head drop
def: "A shoot system yield trait (TO:0000327) which is a measure of the number of fertile spikes (PO:0030117) dropped before harvest." [T-CAP:Victoria_Blake, TO:Laurel_Cooper]
synonym: "spike drop (exact)" EXACT []
synonym: "spike inflorescence drop (exact)" EXACT []
is_a: TO:0000327 ! shoot system yield trait
created_by: jaiswalp
creation_date: 2011-08-19T01:33:35Z

[Term]
id: TO:0020078
name: zeaxanthin content
def: "A xanthophyll content (TO:0000301) which is the amount of zeaxanthin (CHEBI:27547) in a plant structure (PO:0009011)." []
xref: CHEBI:27547
is_a: TO:0000301 ! xanthophyll content
created_by: jaiswalp
creation_date: 2011-08-19T02:49:07Z

[Term]
id: TO:0020079
name: beta-cryptoxanthin content
def: "A xanthophyll content (TO:0000301) which is the amount of beta-cryptoxanthin (CHEBI:10362) in a plant structure (PO:0009011)." [TO:Laurel_Cooper]
xref: CHEBI:10362
is_a: TO:0000301 ! xanthophyll content
created_by: jaiswalp
creation_date: 2011-08-19T02:53:13Z

[Term]
id: TO:0020080
name: stover organic matter digestibility
def: "A plant quality trait (TO:0000597) which is the amount of organic matter in the stover that can be digested by animals." [ICRISAT:Vincent_Vadez, ILRI:Michael_Blummel, TO:Laurel_Cooper]
comment: Measured as a percentage. The value is derived from in vitro chemical analysis with rumen microbial inoculum of dried and ground stover, usually using Near Infrared Reflectance Spectrophotometry (NIRS) after appropriate calibration.
synonym: "in vitro organic matter digestibility (exact)" EXACT []
synonym: "stover related trait (broad)" BROAD [GCP:GCP_324.000003]
is_a: TO:0000597 ! plant quality trait
created_by: jaiswalp
creation_date: 2011-08-19T03:13:08Z

[Term]
id: TO:0020081
name: metabolized energy of stover
def: "The trait  takes into account energy losses occurring in the animal in faeces, urine and CH4 and estimates how much energy (in calories or joules) a given unit of ground stover is actually available for meat and milk production . Value derived from chemical and in vitro analysis of dried and ground stover." [GCP:GCP_324.0000036, ICRISAT:Vincent_Vadez, ILRI:Michael_Blummel]
comment: Units: Kcal/kg.
synonym: "metabolised energy (exact)" EXACT []
synonym: "stover related traits (broad)" BROAD [GCP:GCP_324.000003]
is_a: TO:0000327 ! shoot system yield trait
created_by: jaiswalp
creation_date: 2011-08-19T03:17:28Z

[Term]
id: TO:0020082
name: stover nitrogen content
def: "A trait to measure percent nitrogen concentration in the stover sample used for predicting crude protein (CP) content of stover by multiplication with a factor of 6.25 (CP = N x 6.25). This concentration is one of the criteria to assess the quality of fodder. Value derived from the analysis of stover using Near Infrared Reflectance Spectrophotometry (NIRS)." [GCP:GCP_324.0000016, ICRISAT:Vincent_Vadez, ILRI:Michael_Blummel]
synonym: "stover related traits" BROAD [GCP:GCP_324.000003]
is_a: TO:0000327 ! shoot system yield trait
created_by: jaiswalp
creation_date: 2011-08-19T03:20:23Z

[Term]
id: TO:0020083
name: stem diameter
def: "A stem morphology trait (TO:0000361) which is the diameter of a stem (PO:0009047)." [Gramene:pankaj_jaiswal, PO:0009047, TO:moorel]
comment: Refer to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
synonym: "culm diameter (related)" RELATED []
xref: PATO:0001334
is_a: TO:0000361 ! stem morphology trait
relationship: part_of TO:0000892 ! stem size
created_by: jaiswalp
creation_date: 2011-08-19T03:31:47Z

[Term]
id: TO:0020084
name: spiral leaf
def: "A trait to measure leaf spiralling." [Gramene:pankaj_jaiswal]
is_a: TO:0000492 ! leaf shape
created_by: jaiswalp
creation_date: 2011-08-19T03:33:01Z

[Term]
id: TO:0020085
name: stem senescence
def: "A shoot development trait (TO:0000654) to measure the senescence of a stem (PO:0009047)." [Gramene:pankaj_jaiswal, PO:0009047, TO:moorel]
comment: Refer to organ senescence (GO:0010260): The process that occurs in an organ near the end of its active life that is associated with the dismantling of cell components and membranes, and an overall decline in metabolism. An example of this process is found in Arabidopsis thaliana.
synonym: "culm senescence (exact)" EXACT []
xref: GO:0010260
xref: TO_GIT:99
is_a: TO:0000654 ! shoot system growth and development trait
created_by: jaiswalp
creation_date: 2011-08-19T03:34:31Z

[Term]
id: TO:0020086
name: neck leaf presence
def: "A trait to observe neck leaf presence." [Gramene:pankaj_jaiswal]
is_a: TO:0000419 ! vascular leaf morphology trait
created_by: jaiswalp
creation_date: 2011-08-19T03:35:46Z

[Term]
id: TO:0020087
name: root cracking
def: "A trait measuring the extent of physical cracking of a root caused by genetic, environmental factors or by post-harvest storage and handling of the root or root part." [Gramene:pankaj_jaiswal]
is_a: TO:0000043 ! root morphology trait
created_by: jaiswalp
creation_date: 2011-08-19T03:44:21Z

[Term]
id: TO:0020088
name: OBSOLETE total water soluble content
alt_id: TO:0002711
def: "OBSOLETE  A metabolite content trait (TO:0000281) which is the concentration of water soluble components in a plant structure (PO:0009011)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
comment: This trait is usually highly correlated with total soluble sugar content (TO:0000340). Often determined in fresh tissue using a refractive index.
synonym: "total dissolved solids content (related)" RELATED []
xref: TO_GIT:100
is_obsolete: true
created_by: jaiswalp
creation_date: 2011-08-19T03:47:00Z

[Term]
id: TO:0020089
name: iron content trait
def: "A mineral and ion content trait (TO:0000465) which is the iron cation (CHEBI:24875) composition in a plant structure (PO:0009011)." []
xref: CHEBI:24873
is_a: TO:0000465 ! mineral and ion content trait
created_by: jaiswalp
creation_date: 2011-08-19T04:02:53Z

[Term]
id: TO:0020090
name: zinc content trait
def: "A mineral and ion content trait (TO:0000465) which is the amount of zinc (CHEBI:63056) in a plant structure (PO:0009011)." [CHEBI:63056]
is_a: TO:0000465 ! mineral and ion content trait
created_by: jaiswalp
creation_date: 2011-08-19T04:02:53Z

[Term]
id: TO:0020091
name: manganese content
def: "A mineral and ion content trait (TO:0000465) which is the amount of manganese (CHEBI:25154) in a plant structure (PO:0009011)." []
xref: CHEBI:25154
is_a: TO:0000465 ! mineral and ion content trait
created_by: jaiswalp
creation_date: 2011-08-19T04:02:53Z

[Term]
id: TO:0020092
name: copper content trait
def: "A mineral and ion content trait (TO:0000465) which is the copper cation (CHEBI:23378) composition in a plant structure (PO:0009011)." [TO:Laurel_Cooper]
synonym: "Cu content (exact)" EXACT []
xref: CHEBI:23377
is_a: TO:0000465 ! mineral and ion content trait
created_by: jaiswalp
creation_date: 2011-08-19T04:02:53Z

[Term]
id: TO:0020093
name: nitrogen content
def: "A mineral and ion content trait (TO:0000465) which is the amount of nitrogen (CHEBI:51143) in a plant structure (PO:0009011)." []
xref: CHEBI:51143
is_a: TO:0000465 ! mineral and ion content trait
created_by: jaiswalp
creation_date: 2011-08-19T04:02:53Z

[Term]
id: TO:0020094
name: nitrate content
def: "A mineral and ion content trait (TO:0000465) which is the amount of nitrate (CHEBI:17632) in a plant structure (PO:0009011)." []
xref: CHEBI:17632
is_a: TO:0020093 ! nitrogen content
created_by: jaiswalp
creation_date: 2011-08-19T04:02:53Z

[Term]
id: TO:0020095
name: stomatal process related trait
def: "Trait associated with any of the stomatal opening, closure, conductance, resistance process." [TO:contributors]
is_a: TO:0000283 ! biological process trait
created_by: jaiswalp
creation_date: 2011-08-19T04:06:44Z

[Term]
id: TO:0020096
name: mineral and ion transport trait
def: "A biological process trait (TO:0000283) which is associated with directed movement of minerals and ions." [TO:contributors, TO:Laurel_Cooper]
is_a: TO:0000283 ! biological process trait
created_by: jaiswalp
creation_date: 2011-08-19T04:08:23Z

[Term]
id: TO:0020097
name: stomatal opening
def: "A trait to measure the physiological parameters involved in the process of opening of stomatal pores." [Gramene:pankaj_jaiswal, TO:contributors]
is_a: TO:0020095 ! stomatal process related trait
created_by: jaiswalp
creation_date: 2011-08-19T04:09:49Z

[Term]
id: TO:0020098
name: nitrate sensitivity
def: "The sensitivity to the nitrate content in the growth medium." [Gramene:pankaj_jaiswal, TO:contributors]
is_a: TO:0000011 ! nitrogen sensitivity
created_by: jaiswalp
creation_date: 2011-08-19T04:11:32Z

[Term]
id: TO:0020099
name: nitrate transport
def: "A mineral and ion transport trait (TO:0020096) which involves the directed movement of nitrate." [TO:contributors, TO:Laurel_Cooper]
is_a: TO:0020096 ! mineral and ion transport trait
created_by: jaiswalp
creation_date: 2011-08-19T04:13:47Z

[Term]
id: TO:0020100
name: nitrate uptake
def: "A mineral and ion transport trait (TO:0020096) which involves nitrate ion uptake in a plant structure (PO:0009011)." [TO:contributors, TO:Laurel_Cooper]
is_a: TO:0020096 ! mineral and ion transport trait
created_by: jaiswalp
creation_date: 2011-08-19T04:13:47Z

[Term]
id: TO:0020101
name: starch mobilization
def: "A biological process trait (TO:0000283) associated with the process of breaking down stored starch into usable sugars." [TO:Laurel_Cooper]
is_a: TO:0000283 ! biological process trait
created_by: jaiswalp
creation_date: 2011-08-19T04:13:47Z

[Term]
id: TO:0020102
name: phosphate content
def: "A mineral and ion content trait (TO:0000465) which is the amount of phosphate (CHEBI:26020) in a plant structure (PO:0009011)." [CHEBI:26020]
synonym: "phosphate ion content (exact)" EXACT []
xref: CHEBI:26020
is_a: TO:0000465 ! mineral and ion content trait
created_by: jaiswalp
creation_date: 2011-08-19T04:16:58Z

[Term]
id: TO:0020103
name: adventitious root length
def: "A root length (TO:0000227) trait which is the length of an adventitious root (shoot-borne root; PO:0000042)." [TO:Laurel_Cooper]
comment: An adventitious root can be a 'shoot-borne root' (PO:0000042) or one of the child terms- all have adventitious root as a broad synonym. Shoot-borne roots are part of the root system (PO:0025025).
is_a: TO:0000227 ! root length
created_by: jaiswalp
creation_date: 2011-08-19T04:18:45Z

[Term]
id: TO:0020104
name: adventitious rootless
def: "Absence of adventitious roots in the plant." [TO:contributors]
is_a: TO:0001006 ! adventitious root number
created_by: jaiswalp
creation_date: 2011-08-19T04:19:49Z

[Term]
id: TO:0020105
name: OBSOLETE CW-cytoplasmic male sterility
def: "OBSOLETE A trait to measure the CW type of cytoplasmic male sterility in plants." [TO:contributors]
comment: Often measured by abnormal pollen germination.
is_obsolete: true
created_by: jaiswalp
creation_date: 2011-08-19T04:21:39Z

[Term]
id: TO:0020106
name: Indole-3-acetic acid content
def: "An auxin content (TO:0002672) which is the amount of indole-3-acetic acid (CHEBI:16411) in a plant structure (PO:0009011)." []
synonym: "IAA content (exact)" EXACT []
synonym: "Indole-3-acetic acid (IAA) content (exact)" EXACT []
xref: CHEBI:16411
is_a: TO:0002672 ! auxin content
created_by: jaiswalp
creation_date: 2011-08-19T04:24:06Z

[Term]
id: TO:0020107
name: plant cell length
def: "A plant cell morphology trait (TO:0002683) which is the length of  a plant cell (PO:0009002)." [Gramene:pankaj_jaiswal, PO:0009002, TO:moorel]
comment: Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points.
xref: PATO:0000122
is_a: TO:0002683 ! plant cell morphology trait
created_by: jaiswalp
creation_date: 2011-08-19T04:25:39Z

[Term]
id: TO:0020108
name: root cortical cell length
def: "The length of the root cortical cell." [Gramene:pankaj_jaiswal] {comment="TO:Laurel_Cooper"}
is_a: TO:0020107 ! plant cell length
created_by: jaiswalp
creation_date: 2011-08-19T04:26:36Z

[Term]
id: TO:0020109
name: vascular bundle development trait
def: "Traits associated with observing effects on the development of vascular bundle." [TO:contributors]
is_a: TO:0006015 ! plant tissue development trait
created_by: jaiswalp
creation_date: 2011-08-19T04:27:34Z

[Term]
id: TO:0020110
name: gynoecium development trait
def: "Traits associated with observing effects on the development of the gynoecium." [TO:contributors]
is_a: TO:0000928 ! plant structure growth and development trait
created_by: jaiswalp
creation_date: 2011-08-19T04:29:46Z

[Term]
id: TO:0020111
name: ovary development trait
def: "Traits associated with observing effects on the development of the ovary." [TO:contributors]
is_a: TO:0020110 ! gynoecium development trait
created_by: jaiswalp
creation_date: 2011-08-19T04:30:47Z

[Term]
id: TO:0020112
name: OBSOLETE phosphorus toxicity
def: "OBSOLETE Accumulation of phosphate level a plant structure (PO:0009011) at toxic level." [TO:contributors]
is_obsolete: true
created_by: jaiswalp
creation_date: 2011-08-19T04:31:40Z

[Term]
id: TO:0020114
name: shoot system phosphorus content
def: "A phosphorus content trait (TO:0001024) which is the phosphorus cation (CHEBI:33467) composition in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:contributors]
is_a: TO:0001024 ! phosphorus content
created_by: jaiswalp
creation_date: 2011-08-19T04:35:33Z

[Term]
id: TO:0020115
name: OBSOLETE chlorophyll fluorescence quenching
def: "OBSOLETE The process to maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules." [TO:contributors]
is_obsolete: true
created_by: jaiswalp
creation_date: 2011-08-19T04:36:34Z

[Term]
id: TO:0020116
name: photochemical quenching
def: "A chlorophyll fluorescence trait (TO:0012006) which is a process where absorbed light energy is used for photochemistry within photosystem II (PSII) instead of being dissipated as heat." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
is_a: TO:0012006 ! chlorophyll fluorescence trait
created_by: jaiswalp
creation_date: 2011-08-19T04:37:43Z

[Term]
id: TO:0020117
name: OBSOLETE non photochemical quenching
def: "OBSOLETE The process to maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules under no light conditions." [Gramene:pankaj_jaiswal, TO:contributors]
synonym: "NPQ (related)" RELATED []
is_obsolete: true
created_by: jaiswalp
creation_date: 2011-08-19T04:37:43Z

[Term]
id: TO:0020118
name: neoxanthin content
def: "A xanthophyll content (TO:0000301) which is the amount of neoxanthin (CHEBI:25501) in a plant structure (PO:0009011)." []
xref: CHEBI:25501
is_a: TO:0000301 ! xanthophyll content
created_by: jaiswalp
creation_date: 2011-08-19T04:39:32Z

[Term]
id: TO:0020119
name: violaxanthin content
def: "A xanthophyll content (TO:0000301) which is the amount of violaxanthin (CHEBI:27295) in a plant structure (PO:0009011)." []
xref: CHEBI:27295
is_a: TO:0000301 ! xanthophyll content
created_by: jaiswalp
creation_date: 2011-08-19T04:40:04Z

[Term]
id: TO:0020120
name: involucral bract spine presence
def: "An inflorescence bract morphology trait (TO:0000819) which is the presence of  spines on an involucral bract (PO:0009045)." [Gramene:pankaj_jaiswal, TO:Laurel_Cooper]
synonym: "spines on involucral bracts (exact)" EXACT []
xref: TO_GIT:110
is_a: TO:0000816 ! inflorescence bract morphology trait
created_by: jaiswalp
creation_date: 2011-08-19T04:50:17Z

[Term]
id: TO:0020121
name: arachnid damage response trait
def: "An animal damage response trait (TO:0000054) which is the response to damage to a plant structure (PO:0009011) caused by an arachnid (NCBITaxon:6854)." [Gramene:pankaj_jaiswal, NCBITaxon:6854, PO:0009011, TO:Laurel_Cooper]
comment: Arachnids include mites, spiders, ticks, scorpions etc.
is_a: TO:0000054 ! animal damage response trait
created_by: jaiswalp
creation_date: 2011-08-19T04:55:55Z

[Term]
id: TO:0020122
name: two-spotted spider mite damage response trait
def: "An arachnid damage response trait (TO:0020121) which is the response to damage to a plant structure (PO:0009011) caused by a two-spotted spider mite  (Tetranychus urticae Koch; NCBITaxon:32264)." [Gramene:pankaj_jaiswal, NCBITaxon:32264, PO:0009011, TO:Laurel_Cooper]
synonym: "twospotted spider mite damage response (exact)" EXACT []
is_a: TO:0020121 ! arachnid damage response trait
created_by: jaiswalp
creation_date: 2011-08-19T04:56:56Z

[Term]
id: TO:0020123
name: ethanol yield from biomass
def: "A trait to measure the ethanol yield from the industrial processing of feedstock (biomass)." [Gramene:pankaj_jaiswal, TO:contributors]
comment: Often measured as volume/mass unit used by DOE-USA. It's also consistent with the common measure of fuel ethanol (volume, not mass) and common measure of biomass.  Please note that ethanol yield in liters per megagram would depend on both the ethanol conversion process and the composition (not just the quantity) of the biomass. And in most cases (at least for breeding), it probably would be predicted ethanol yield instead of ethanol yield that is directly measured from a pretreatment and fermentation process.
is_a: TO:0000371 ! yield trait
created_by: jaiswalp
creation_date: 2011-08-19T05:09:40Z

[Term]
id: TO:1000000
name: stem internode bent
def: "A stem internode morphology trait (TO:0000756) where the stem internode (PO:0020142) is bent." [TO:Laurel_Cooper]
comment: Refers to bent (PATO:0000617): a shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length.
is_a: TO:0000756 ! stem internode morphology trait
created_by: cooperl
creation_date: 2015-11-24T22:16:25Z

[Term]
id: TO:1000001
name: OBSOLETE cotyledon size
def: "OBSOLETE. A trait which is associated with the size of a cotyledon." [TO:TermGenie]
comment: This term was obsoleted at the TermGenie Gatekeeper stage.
synonym: "seed leaf size (exact)" EXACT [TO:TermGenie]
is_obsolete: true
created_by: cjmungall
creation_date: 2015-11-30T17:23:54Z

[Term]
id: TO:1000002
name: secondary xylem volumetric density
def: "A trait which is associated with the volumetric density of a secondary xylem." [TO:TermGenie]
synonym: "wood volumetric density (exact)" EXACT [TO:TermGenie]
is_a: PATO:0001353 {is_inferred="true"} ! volumetric density
is_a: TO:0000470 {is_inferred="true"} ! vascular tissue morphology trait
relationship: inheres_in PO:0005848 {is_inferred="true"} ! secondary xylem
created_by: cjmungall
creation_date: 2015-11-30T17:23:56Z

[Term]
id: TO:1000003
name: shoot axis node color
def: "A trait which is associated with the color of a shoot axis node." [TO:TermGenie]
synonym: "shoot axis node colour (exact)" EXACT [TO:TermGenie]
synonym: "shoot axis node relative color (exact)" EXACT [TO:TermGenie]
is_a: PATO:0000014 {is_inferred="true"} ! color
is_a: TO:0000754 {is_inferred="true"} ! cardinal organ part morphology trait
relationship: inheres_in PO:0005004 {is_inferred="true"} ! shoot axis node
created_by: cjmungall
creation_date: 2015-11-30T17:23:58Z

[Term]
id: TO:1000004
name: infructescence position
def: "A reproductive shoot system morphology trait (TO:0000786) which is the position of an infructescence (PO:0006342)." [TO:Laurel_Cooper]
is_a: TO:0000786 ! reproductive shoot system morphology trait
created_by: cooperl
creation_date: 2015-12-10T00:13:35Z

[Term]
id: TO:1000006
name: tuberous root tuber diameter
def: "A tuberous root tuber morphology trait (TO:1000007) which is the diameter of a tuberous root tuber (PO:0025476)." [TO:TermGenie]
synonym: "root tuber diameter (related)" RELATED [TO:TermGenie]
synonym: "storage root diameter (exact)" EXACT [TO:TermGenie]
is_a: TO:1000007 ! tuberous root tuber morphology trait
created_by: marieangelique.laporte
creation_date: 2015-12-11T15:55:08Z

[Term]
id: TO:1000007
name: tuberous root tuber morphology trait
def: "A tuber morphology trait (TO:0000741) which is the quality of a tuberous root tuber (PO:0025476)." [TO:malaporte]
is_a: TO:0000741 ! tuber morphology trait
created_by: marieangelique.laporte
creation_date: 2015-12-11T16:05:03Z

[Term]
id: TO:1000008
name: branch position
def: "A branch morphology trait (TO:0000740) which is the position of a branch (PO:0025073)." [TO:TermGenie]
synonym: "shoot axis branch position (exact)" EXACT [TO:TermGenie]
is_a: PATO:0000140 {is_inferred="true"} ! position
is_a: TO:0000740 {is_inferred="true"} ! branch morphology trait
relationship: inheres_in PO:0025073 {is_inferred="true"} ! branch
created_by: marieangelique.laporte
creation_date: 2015-12-16T09:38:12Z

[Term]
id: TO:1000009
name: branch angle
def: "A branch morphology trait (TO:0000740) which is the angle of a branch (PO:0025073)." [TO:TermGenie]
synonym: "branching angle (exact)" EXACT []
synonym: "shoot axis branch angle (exact)" EXACT [TO:TermGenie]
is_a: PATO:0002326 {is_inferred="true"} ! angle
is_a: TO:0000740 {is_inferred="true"} ! branch morphology trait
relationship: inheres_in PO:0025073 {is_inferred="true"} ! branch
created_by: marieangelique.laporte
creation_date: 2015-12-16T14:12:59Z

[Term]
id: TO:1000010
name: caruncle color
def: "A cardinal part of a multi-tissue plant structure morphology trait (TO:0000837) which is the color of a caruncle (PO:0020060)." [PO:0020060, TO:TermGenie]
synonym: "caruncle colour (exact)" EXACT [TO:TermGenie]
is_a: PATO:0000014 {is_inferred="true"} ! color
is_a: TO:0000837 {is_inferred="true"} ! cardinal part of a multi-tissue plant structure morphology trait
relationship: inheres_in PO:0020060 {is_inferred="true"} ! caruncle
created_by: marieangelique.laporte
creation_date: 2015-12-16T14:18:40Z

[Term]
id: TO:1000011
name: fruit position
def: "A fruit morphology trait (TO:0002629) which is the position of a fruit (PO:0009001)." [TO:Laurel_Cooper]
synonym: "accessory fruit position (narrow)" NARROW [TO:TermGenie]
synonym: "achene position (narrow)" NARROW [TO:TermGenie]
synonym: "acorn position (narrow)" NARROW [TO:TermGenie]
synonym: "aggregate fruit position (narrow)" NARROW [TO:TermGenie]
synonym: "akene position (narrow)" NARROW [TO:TermGenie]
synonym: "anthocarp position (narrow)" NARROW [TO:TermGenie]
synonym: "berry position (narrow)" NARROW [TO:TermGenie]
synonym: "capsule position (narrow)" NARROW [TO:TermGenie]
synonym: "caryopsides position (narrow)" NARROW [TO:TermGenie]
synonym: "caryopsis position (narrow)" NARROW [TO:TermGenie]
synonym: "circumcissile capsule position (narrow)" NARROW [TO:TermGenie]
synonym: "citrus fruit position (narrow)" NARROW [TO:TermGenie]
synonym: "coenocarp position (narrow)" NARROW [TO:TermGenie]
synonym: "cypsela position (narrow)" NARROW [TO:TermGenie]
synonym: "diclesium position (narrow)" NARROW [TO:TermGenie]
synonym: "diplotegia position (narrow)" NARROW [TO:TermGenie]
synonym: "diplotegium position (narrow)" NARROW [TO:TermGenie]
synonym: "drupe position (narrow)" NARROW [TO:TermGenie]
synonym: "folliceta position (narrow)" NARROW [TO:TermGenie]
synonym: "follicetum position (narrow)" NARROW [TO:TermGenie]
synonym: "fruit location (exact)" EXACT [TO:TermGenie]
synonym: "fruit placement (exact)" EXACT [TO:TermGenie]
synonym: "glandes position (narrow)" NARROW [TO:TermGenie]
synonym: "glans position (narrow)" NARROW [TO:TermGenie]
synonym: "grain position (narrow)" NARROW [TO:TermGenie]
synonym: "hesperidia position (narrow)" NARROW [TO:TermGenie]
synonym: "hesperidium position (narrow)" NARROW [TO:TermGenie]
synonym: "hip position (narrow)" NARROW [TO:TermGenie]
synonym: "kernel position (narrow)" NARROW [TO:TermGenie]
synonym: "legume position (narrow)" NARROW [TO:TermGenie]
synonym: "loculicidal capsule position (narrow)" NARROW [TO:TermGenie]
synonym: "loment position (narrow)" NARROW [TO:TermGenie]
synonym: "lomentum position (narrow)" NARROW [TO:TermGenie]
synonym: "multiple fruit position (narrow)" NARROW [TO:TermGenie]
synonym: "nut position (narrow)" NARROW [TO:TermGenie]
synonym: "nutlet position (narrow)" NARROW [TO:TermGenie]
synonym: "pepo position (narrow)" NARROW [TO:TermGenie]
synonym: "pod position (narrow)" NARROW [TO:TermGenie]
synonym: "pome position (narrow)" NARROW [TO:TermGenie]
synonym: "poricidal capsule position (narrow)" NARROW [TO:TermGenie]
synonym: "pyxides location (narrow)" NARROW [TO:TermGenie]
synonym: "pyxides position (narrow)" NARROW [TO:TermGenie]
synonym: "pyxis position (narrow)" NARROW [TO:TermGenie]
synonym: "samara position (narrow)" NARROW [TO:TermGenie]
synonym: "schizocarp location (narrow)" NARROW [TO:TermGenie]
synonym: "schizocarp position (narrow)" NARROW [TO:TermGenie]
synonym: "septicidal capsule position (narrow)" NARROW [TO:TermGenie]
synonym: "silicle location (narrow)" NARROW [TO:TermGenie]
synonym: "silicle position (narrow)" NARROW [TO:TermGenie]
synonym: "silicula position (narrow)" NARROW [TO:TermGenie]
synonym: "silicula relational spatial quality (narrow)" NARROW [TO:TermGenie]
synonym: "siliqua position (narrow)" NARROW [TO:TermGenie]
synonym: "silique position (narrow)" NARROW [TO:TermGenie]
synonym: "stone fruit position (narrow)" NARROW [TO:TermGenie]
synonym: "syconia position (narrow)" NARROW [TO:TermGenie]
synonym: "syconium position (narrow)" NARROW [TO:TermGenie]
synonym: "syncarp position (narrow)" NARROW [TO:TermGenie]
synonym: "utricle location (narrow)" NARROW [TO:TermGenie]
synonym: "utricle position (narrow)" NARROW [TO:TermGenie]
is_a: PATO:0000140 {is_inferred="true"} ! position
is_a: TO:0002629 {is_inferred="true"} ! fruit morphology trait
relationship: inheres_in PO:0009001 {is_inferred="true"} ! fruit
created_by: cooperl
creation_date: 2015-12-30T18:26:07Z

[Term]
id: TO:1000012
name: whole plant size
def: "A whole plant morphology trait (TO:0000398) which is the size of a whole plant (PO:0000003)." [TO:Laurel_Cooper]
synonym: "bush size (narrow)" NARROW [TO:TermGenie]
synonym: "clonal colony size (related)" RELATED [TO:TermGenie]
synonym: "colony size (related)" RELATED [TO:TermGenie]
synonym: "frutex size (narrow)" NARROW [TO:TermGenie]
synonym: "frutices size (narrow)" NARROW [TO:TermGenie]
synonym: "gametophyte size (narrow)" NARROW [TO:TermGenie]
synonym: "herb size (narrow)" NARROW [TO:TermGenie]
synonym: "liana size (narrow)" NARROW [TO:TermGenie]
synonym: "planta entera (Spanish) size (exact)" EXACT [TO:TermGenie]
synonym: "prothalli size (narrow)" NARROW [TO:TermGenie]
synonym: "prothallium size (narrow)" NARROW [TO:TermGenie]
synonym: "prothallus size (narrow)" NARROW [TO:TermGenie]
synonym: "seedling size (narrow)" NARROW [TO:TermGenie]
synonym: "shrub size (narrow)" NARROW [TO:TermGenie]
synonym: "sporophyte size (narrow)" NARROW [TO:TermGenie]
synonym: "suffrutex size (narrow)" NARROW [TO:TermGenie]
synonym: "suffrutices size (narrow)" NARROW [TO:TermGenie]
synonym: "tree size (narrow)" NARROW [TO:TermGenie]
synonym: "vine size (narrow)" NARROW [TO:TermGenie]
synonym: "woody clump size (narrow)" NARROW [TO:TermGenie]
is_a: PATO:0000117 {is_inferred="true"} ! size
is_a: TO:0000398 {is_inferred="true"} ! whole plant morphology trait
relationship: inheres_in PO:0000003 {is_inferred="true"} ! whole plant
created_by: cooperl
creation_date: 2015-12-30T19:41:19Z

[Term]
id: TO:1000013
name: leaf lamina lobe morphology trait
def: "A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf lamina lobe (PO:0025517)." [TO:TermGenie]
synonym: "leaf lobe morphology trait (exact)" EXACT []
is_a: TO:0000754 ! cardinal organ part morphology trait
relationship: inheres_in PO:0025517 ! leaf lamina lobe
created_by: marieangelique.laporte
creation_date: 2016-01-05T10:49:33Z

[Term]
id: TO:1000014
name: leaf lamina lobe length
def: "A leaf lamina lobe morphology trait (TO:1000013) which is the length of a leaf lamina lobe (PO:0025517)." [TO:TermGenie]
synonym: "leaf lobe length (exact)" EXACT []
is_a: PATO:0000122 ! length
is_a: TO:1000013 ! leaf lamina lobe morphology trait
relationship: inheres_in PO:0025517 ! leaf lamina lobe
created_by: marieangelique.laporte
creation_date: 2016-01-05T11:01:12Z

[Term]
id: TO:1000015
name: leaf lamina lobe width
def: "A leaf lamina lobe morphology trait (TO:1000013) which is the width of a leaf lamina lobe (PO:0025517)." [TO:TermGenie]
synonym: "leaf lobe width (related)" RELATED []
is_a: PATO:0000921 ! width
is_a: TO:1000013 ! leaf lamina lobe morphology trait
relationship: inheres_in PO:0025517 ! leaf lamina lobe
created_by: marieangelique.laporte
creation_date: 2016-01-05T11:04:25Z

[Term]
id: TO:1000016
name: plant ovary color
def: "A plant ovary morphology (TO:10000021) which is the color of a plant ovary (PO:0009072)." [TO:TermGenie]
synonym: "plant ovary colour (exact)" EXACT []
synonym: "plant ovary relative color (narrow)" NARROW []
is_a: PATO:0000014 ! color
is_a: TO:1000021 ! plant ovary morphology
created_by: marieangelique.laporte
creation_date: 2016-01-05T10:36:57Z

[Term]
id: TO:1000017
name: stem cortex color
def: "A portion of plant tissue morphology trait (TO:0000843) which is the color of a stem cortex (PO:0025612)." [TO:TermGenie]
synonym: "stem cortex colour (exact)" EXACT [TO:TermGenie]
synonym: "stem cortex relative color (exact)" EXACT [TO:TermGenie]
is_a: PATO:0000014 {is_inferred="true"} ! color
is_a: TO:0000843 {is_inferred="true"} ! portion of plant tissue morphology trait
relationship: inheres_in PO:0025612 {is_inferred="true"} ! stem cortex
created_by: marieangelique.laporte
creation_date: 2016-01-05T14:08:59Z

[Term]
id: TO:1000018
name: stem epidermis color
def: "A portion of plant tissue morphology trait (TO:0000843) which is the color of a stem epidermis (PO:0025178)." [TO:TermGenie]
synonym: "stem epidermis colour (exact)" EXACT [TO:TermGenie]
synonym: "stem epidermis relative color (exact)" EXACT [TO:TermGenie]
is_a: PATO:0000014 {is_inferred="true"} ! color
is_a: TO:0000843 {is_inferred="true"} ! portion of plant tissue morphology trait
relationship: inheres_in PO:0025178 {is_inferred="true"} ! stem epidermis
created_by: marieangelique.laporte
creation_date: 2016-01-05T14:11:24Z

[Term]
id: TO:1000019
name: disk flower color
def: "A flower color trait (TO:0000537) which is the color of a disk flower (PO:0025332)." [TO:TermGenie]
synonym: "disc floret color (exact)" EXACT [TO:TermGenie]
synonym: "disk floret color (exact)" EXACT [TO:TermGenie]
is_a: TO:0000537 {is_inferred="true"} ! flower color
relationship: inheres_in PO:0025332 {is_inferred="true"} ! disk flower
created_by: marieangelique.laporte
creation_date: 2016-01-05T14:21:10Z

[Term]
id: TO:1000020
name: stipule length
def: "A cardinal organ part morphology trait (TO:0000754) which is the length of a stipule (PO:0020041)." [TO:TermGenie]
is_a: PATO:0000122 {is_inferred="true"} ! length
is_a: TO:0000754 {is_inferred="true"} ! cardinal organ part morphology trait
relationship: inheres_in PO:0020041 {is_inferred="true"} ! stipule
created_by: marieangelique.laporte
creation_date: 2016-01-05T14:57:02Z

[Term]
id: TO:1000021
name: plant ovary morphology
def: "A plant structure morphology trait (TO:0000839) which is a quality of a plant ovary (PO:0009072)." [TO:TermGenie]
synonym: "Poaceae ovary morphology (narrow)" NARROW [TO:TermGenie]
synonym: "Zea ovary morphology (narrow)" NARROW [TO:TermGenie]
is_a: TO:0000839 {is_inferred="true"} ! plant structure morphology trait
relationship: inheres_in PO:0009072 {is_inferred="true"} ! plant ovary
created_by: cooperl
creation_date: 2016-01-06T01:44:00Z

[Term]
id: TO:1000022
name: anther morphology trait
def: "A collective plant organ structure trait (TO:0000842) which is the quality of an anther (PO:0009066)." [TO:austinmeier]
xref: TO_GIT:385
is_a: TO:0000842 ! collective plant organ structure morphology trait
relationship: part_of TO:0000215 ! stamen morphology trait
created_by: meiera
creation_date: 2016-02-20T00:23:55Z

[Term]
id: TO:1000023
name: lemma morphology trait
def: "A flower bract morphology trait (TO:0000079) which is the quality of a lemma (PO:0009037)." [PO:0009037, TO:Laurel_Cooper]
xref: TO_GIT:390
is_a: TO:0000079 ! flower bract morphology trait
created_by: cooperl
creation_date: 2016-03-16T10:36:57Z

[Term]
id: TO:1000024
name: palea morphology trait
def: "A flower bract morphology trait (TO:0000079) which is the quality of a palea (PO:0009038)." [PO:0009038, TO:Laurel_Cooper]
xref: TO_GIT:390
is_a: TO:0000079 ! flower bract morphology trait
created_by: cooperl
creation_date: 2016-03-17T10:36:57Z

[Term]
id: TO:1000025
name: root system aluminum content
def: "An aluminium content trait (TO:0000995) which is the aluminium cation (CHEBI:63062) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Al content  (related)" RELATED []
synonym: "root system Al content (exact)" EXACT []
xref: TO_GIT:412
is_a: TO:0000995 ! aluminum content trait

[Term]
id: TO:1000026
name: root system arsenic content
def: "An arsenic content trait (TO:0006054) which is the arsenic cation (CHEBI:35829) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root As content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006054 ! arsenic content trait

[Term]
id: TO:1000027
name: root system boron content
def: "A boron content trait (TO:0006043) which is the boron cation (CHEBI:30168) composition in a root system  (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root B content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006043 ! boron content

[Term]
id: TO:1000028
name: root system barium content
def: "A barium content trait (TO:0001043) which is the barium cation (CHEBI:39125) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Ba content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0001043 ! barium content trait

[Term]
id: TO:1000029
name: root system calcium content
def: "A calcium content trait (TO:0006047) which is the calcium cation (CHEBI:39123) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Ca content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006047 ! calcium content trait

[Term]
id: TO:1000030
name: root system cadmium content
def: "A cadmium content trait (TO:0006059) which is the cadmium cation (CHEBI:63063) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Cd content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006059 ! cadmium content trait

[Term]
id: TO:1000031
name: root system cobalt content
def: "A cobalt content trait (TO:0001044) which is the cobalt cation (CHEBI:23336) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Co content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0001044 ! cobalt content trait

[Term]
id: TO:1000032
name: root system chromium content
def: "A chromium content trait (TO:0001045) which is the chromium cation (CHEBI:33516) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Cr content (related)" RELATED []
is_a: TO:0001045 ! chromium content trait

[Term]
id: TO:1000033
name: root system copper content
def: "A copper content trait (TO:0020092) which is the copper cation (CHEBI:23378) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Cu content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0020092 ! copper content trait

[Term]
id: TO:1000034
name: root system iron content
def: "An iron content trait (TO:0020089) which is the iron cation (CHEBI:24875) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Fe content (related)" RELATED []
is_a: TO:0020089 ! iron content trait

[Term]
id: TO:1000035
name: root system iodine content
def: "An iodine content trait (TO:0001046) which is the iodine cation (CHEBI:33116) in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root I content (related)" RELATED []
is_a: TO:0001046 ! iodine content trait

[Term]
id: TO:1000036
name: root system potassium content
def: "A potassium content trait (TO:0000609) which is the potassium cation (CHEBI:29103) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root K content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0000609 ! potassium content

[Term]
id: TO:1000037
name: root system lithium content
def: "A lithium content trait (TO:0006042) which is the lithium cation (CHEBI:49713) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Li content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006042 ! lithium content

[Term]
id: TO:1000038
name: root system magnesium content
def: "A magnesium content trait (TO:0006044) which is the magnesium cation (CHEBI:18420) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Mg content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006044 ! magnesium content

[Term]
id: TO:1000039
name: root system manganese content
def: "A manganese content trait (TO:0020091) which is the manganese cation (CHEBI:29035) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Mn content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0020091 ! manganese content

[Term]
id: TO:1000040
name: root system molybdenum content
def: "A molybdenum content trait (TO:0006056) which is the molybdenum cation (CHEBI:37239) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Mo content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006056 ! molybdenum content

[Term]
id: TO:1000041
name: root system sodium content
def: "A sodium content trait (TO:0000608) which is the sodium cation (CHEBI:29101) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Na content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0000608 ! sodium content

[Term]
id: TO:1000042
name: root system nickel content
def: "A nickel content trait (TO:0006051) which is the nickel cation (CHEBI:25516) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Ni content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006051 ! nickel content

[Term]
id: TO:1000043
name: root system phosphorus content
def: "A phosphorus content trait (TO:0001024) which is the phosphorus cation (CHEBI:33467) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
xref: TO_GIT:412
is_a: TO:0001024 ! phosphorus content
created_by: Laurel_Cooper

[Term]
id: TO:1000044
name: root system lead content
def: "A lead content trait (TO:0001047) which is the lead cation (CHEBI:30180) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Pb content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0001047 ! lead content trait

[Term]
id: TO:1000045
name: root system rubidium content
def: "A rubidium content trait (TO:0001049) which is the rubidium cation (CHEBI:49847) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Rb content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0001049 ! rubidium content trait

[Term]
id: TO:1000046
name: root system sulfur content
def: "A sulfur content trait (TO:0006046) which is the sulfur cation (CHEBI:29832) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root S content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006046 ! sulfur content

[Term]
id: TO:1000047
name: root system selenium content
def: "A selenium content trait (TO:0006055) which is the selenium ion (CHEBI:60250) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Se content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006055 ! selenium content

[Term]
id: TO:1000048
name: root system silicon content
def: "A silicon content trait (TO:0001048) which is the  silicon cation (CHEBI:30584) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Si content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0001048 ! silicon content trait

[Term]
id: TO:1000049
name: root system strontium content
def: "A mineral and ion content trait  (TO:0000465) which is the strontium ion (CHEBI:39130) composition in a root system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Sr content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0001050 ! strontium content trait

[Term]
id: TO:1000050
name: root system zinc content
def: "A zinc content trait (TO:0020090) which is the zinc (CHEBI:63056) composition in a root system (PO:0025025)." [CHEBI:63056, https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "root Zn content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0020090 ! zinc content trait

[Term]
id: TO:1000051
name: shoot system aluminum content
def: "An aluminium content trait (TO:0000995) which is the aluminium cation (CHEBI:63062) composition in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot Al content (related)" RELATED []
synonym: "shoot system Al content (exact)" EXACT []
xref: TO_GIT:412
is_a: TO:0000995 ! aluminum content trait

[Term]
id: TO:1000052
name: shoot system arsenic content
def: "An arsenic content trait (TO:0006054) which is the arsenic cation (CHEBI:35829) composition in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot As content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006054 ! arsenic content trait

[Term]
id: TO:1000053
name: shoot system boron content
def: "A boron  content trait (TO:0006043) which is the boron cation (CHEBI:30168) composition in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot B content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006043 ! boron content

[Term]
id: TO:1000054
name: shoot system barium content
def: "A barium content trait (TO:0001043) which is the barium cation (CHEBI:39125) composition in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot Ba content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0001043 ! barium content trait

[Term]
id: TO:1000055
name: shoot system calcium content
def: "A calcium content trait (TO:0006047) which is the calcium cation (CHEBI:39123) composition in a shoot system (PO:0025025)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot Ca content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006047 ! calcium content trait

[Term]
id: TO:1000056
name: shoot system cadmium content
def: "A cadmium content trait (TO:0006059) which is the cadmium cation (CHEBI:63063) composition in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot Cd content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006059 ! cadmium content trait

[Term]
id: TO:1000057
name: shoot system cobalt content
def: "A cobalt content trait (TO:0001044) which is the cobalt cation (CHEBI:23336) composition in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot Co content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0001044 ! cobalt content trait

[Term]
id: TO:1000058
name: shoot system chromium content
def: "A chromium content trait (TO:0001045) which is the chromium cation (CHEBI:33516) composition in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot Cr content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0001045 ! chromium content trait

[Term]
id: TO:1000059
name: shoot system copper content
def: "A copper content trait (TO:0020092) which is the copper cation (CHEBI:23378) composition in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot Cu content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0020092 ! copper content trait

[Term]
id: TO:1000060
name: shoot system iron content
def: "An iron content trait (TO:0020089) which is the iron cation (CHEBI:24875) composition in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot Fe content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0020089 ! iron content trait

[Term]
id: TO:1000061
name: shoot system iodine content
def: "An iodine content trait (TO:0001046) which is the iodine cation (CHEBI:33116) in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot I content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0001046 ! iodine content trait

[Term]
id: TO:1000062
name: shoot system lithium content
def: "A lithium content trait (TO:0006042) which is the lithium cation (CHEBI:49713) composition in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot Li content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006042 ! lithium content

[Term]
id: TO:1000063
name: shoot system magnesium content
def: "A magnesium content trait (TO:0006044) which is the magnesium cation (CHEBI:18420) composition in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot Mg content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006044 ! magnesium content

[Term]
id: TO:1000064
name: shoot system manganese content
def: "A manganese content trait (TO:0020091) which is the manganese cation (CHEBI:29035) composition in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot Mn content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0020091 ! manganese content

[Term]
id: TO:1000065
name: shoot system molybdenum content
def: "A molybdenum content trait (TO:0006056) which is the (CHEBI:37239) in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot Mo content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006056 ! molybdenum content

[Term]
id: TO:1000066
name: shoot system nickel content
def: "A nickel content trait (TO:0006051) which is the nickel cation (CHEBI:25516) composition in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot Ni content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006051 ! nickel content

[Term]
id: TO:1000067
name: shoot system lead content
def: "A lead content trait (TO:0001047) which is the lead cation (CHEBI:30180) composition  in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot Pb content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0001047 ! lead content trait

[Term]
id: TO:1000068
name: shoot system rubidium content
def: "A rubidium content trait (TO:0001049)  which is the rubidium cation (CHEBI:49847) composition in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot Rb content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0001049 ! rubidium content trait

[Term]
id: TO:1000069
name: shoot system sulfur content
def: "A sulfur content trait (TO:0006046) which is the sulfur cation (CHEBI:29832) composition in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot S content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006046 ! sulfur content

[Term]
id: TO:1000070
name: shoot system selenium content
def: "A selenium content trait (TO:0006055) which is the selenium ion (CHEBI:60250) composition in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot Se content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0006055 ! selenium content

[Term]
id: TO:1000071
name: shoot system silicon content
def: "A silicon content trait (TO:0001048) which is the  silicon cation (CHEBI:30584) composition in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot Si content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0001048 ! silicon content trait

[Term]
id: TO:1000072
name: shoot system strontium content
def: "A strontium content trait (TO:0001050) which is the strontium ion (CHEBI:39130) composition in a shoot system (PO:0009006)." [https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shoot Sr content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0001050 ! strontium content trait

[Term]
id: TO:1000073
name: shoot system zinc content
def: "A zinc content trait (TO:0020090) which is the zinc (CHEBI:63056) composition in the shoot system (PO:0009006)." [CHEBI:63056, https://search.proquest.com/docview/1426182399, TO:Laurel_Cooper]
synonym: "shooCFt Zn content (related)" RELATED []
xref: TO_GIT:412
is_a: TO:0020090 ! zinc content trait

[Term]
id: TO:1000074
name: linolenic acid content
def: "A fatty acid content trait (TO:0001170) which is the amount of linolenic acid in a plant structure (PO:0009011)." [CHEBI:25048, TO:Laurel_Cooper|wikipedia:Α-Linolenic_acid ]
comment: Linolenic acid is a polyunsaturated, 18 carbon fatty acid, with three double bonds. There are two forms of linolenic acid, alpha and gamma, depending upon where the double bonds occur. Alpha-linolenic acid (ALA) is an essential omega-3 fatty acid found in flaxseed, walnuts, and canola oil that the body cannot produce, making dietary intake necessary.
is_a: TO:0001170 ! fatty acid content trait
created_by: Laurel_Cooper
creation_date: 2020-09-16T12:00:00Z

[Term]
id: TO:1000075
name: palmitic acid content
def: "A fatty acid content trait (TO:0001170) which is the amount of palmitic acid in a plant structure (PO:0009011).[CHEBI:15756, TO:Laurel_Cooper|wikipedia:Palmitic_acid]
comment: Palmitic acid is a straight-chain, sixteen-carbon, saturated long-chain fatty acid and is a major component of palm oil from the fruit of Elaeis guineensis (oil palms), making up to 44% of total fats. 
synonym: "hexadecanoic acid (exact)" EXACT []
is_a: TO:0001170 ! fatty acid content trait
created_by: Laurel_Cooper
creation_date: 2020-09-16T12:00:00Z

[Typedef]
id: evaluation_location
name: evaluation location

[Typedef]
id: from_country
name: from country

[Typedef]
id: has_absolute_phenotype
name: has absolute phenotype

[Typedef]
id: has_dividend_entity
name: has dividend entity

[Typedef]
id: has_dividend_quality
name: has dividend quality

[Typedef]
id: has_divisor_entity
name: has divisor entity

[Typedef]
id: has_divisor_quality
name: has divisor quality

[Typedef]
id: has_part
name: has part
xref: BFO:0000051

[Typedef]
id: has_phenotype_score
name: has phenotype score

[Typedef]
id: has_phenotype_variable
name: has phenotype variable

[Typedef]
id: has_ratio_quality
name: has ratio quality

[Typedef]
id: has_relative_phenotype
name: has relative phenotype

[Typedef]
id: inheres_in
name: inheres in
xref: RO:0000052

[Typedef]
id: occurs_in
name: occurs in
xref: BFO:0000066

[Typedef]
id: part_of
name: part of
xref: BFO:0000050

[Typedef]
id: relative_to
name: relative to