Merge pull request #160 from PolicyEngine/maria/ssi_policy_tests #146
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| push: | |
| branches: [ main ] | |
| jobs: | |
| Test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.12", "3.13"] | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v5 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install R and dependencies (Python 3.13 only) | |
| if: matrix.python-version == '3.13' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y r-base r-base-dev libtirpc-dev | |
| - name: Install R packages (Python 3.13 only) | |
| if: matrix.python-version == '3.13' | |
| run: | | |
| sudo Rscript -e 'install.packages("StatMatch", repos="https://cloud.r-project.org")' | |
| sudo Rscript -e 'install.packages("clue", repos="https://cloud.r-project.org")' | |
| - name: Install full dependencies (Python 3.13) | |
| if: matrix.python-version == '3.13' | |
| run: | | |
| uv pip install -e ".[dev,docs,matching,mdn,images]" --system | |
| - name: Install minimal dependencies (Python 3.12) | |
| if: matrix.python-version == '3.12' | |
| run: | | |
| uv pip install -e ".[dev]" --system | |
| - name: Run full tests with coverage (Python 3.13) | |
| if: matrix.python-version == '3.13' | |
| run: make test | |
| - name: Run smoke test only (Python 3.12) | |
| if: matrix.python-version == '3.12' | |
| run: | | |
| python -m pytest tests/test_smoke_qrf.py -v | |
| python -m pytest tests/test_basic.py -v | |
| - name: Run pipeline example | |
| if: matrix.python-version == '3.13' | |
| run: | | |
| python examples/pipeline.py | |
| - name: Upload microimputation results | |
| if: always() && matrix.python-version == '3.13' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: microimputation-results-${{ github.sha }} | |
| path: microimputation-dashboard/public/microimputation_results.csv | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| file: ./coverage.xml | |
| fail_ci_if_error: false | |
| verbose: true |