image-tools/formats/image-dimension-stacking-tool/plugin.json at 6c3492be1aec0efba52c985a45179c65edc689ef · PolusAI/image-tools · GitHub

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{
  "name": "Image Dimension Stacking",
  "version": "0.2.0-dev0",
  "title": "Stacking of image dimensions (c, z, t) to create a multidimensional image.",
  "description": "Stacking of image dimensions (c, z, t) to create a multidimensional image.",
  "author": "Nick Schaub (nick.schaub@nih.gov), Hamdah Shafqat Abbasi (hamdahshafqat.abbasi@nih.gov)",
  "institution": "National Center for Advancing Translational Sciences, National Institutes of Health",
  "repository": "https://github.com/PolusAI/image-tools",
  "website": "https://ncats.nih.gov/preclinical/core/informatics",
  "containerId": "polusai/image-dimension-stacking-tool:0.2.0-dev0",
  "baseCommand": [
    "python3",
    "-m",
    "polus.images.formats.image_dimension_stacking"
  ],
  "inputs": {
    "inpDir": {
      "type": "collection",
      "title": "Input collection",
      "description": "Input image collection to be processed by this plugin.",
      "required": "True"
    },
    "filePattern": {
      "type": "string",
      "title": "Filename pattern",
      "description": "Filename pattern used to separate data.",
      "required": "True"
    },
    "axis": {
      "type": "string",
      "title": "Axis",
      "description": "Axis to stack. One of 'c', 'z', 't'.",
      "required": "False",
      "default": "z"
    },
    "preview": {
      "type": "boolean",
      "title": "Preview",
      "description": "Generate an output preview.",
      "required": "False"
    }
  },
  "outputs": {
    "outDir": {
      "type": "collection",
      "description": "Output collection."
    }
  },
  "ui": {
    "inpDir": {
      "type": "collection",
      "title": "Input collection",
      "description": "Input image collection to be processed by this plugin.",
      "required": "True"
    },
    "filePattern": {
      "type": "string",
      "title": "Filename pattern",
      "description": "Filename pattern used to separate data.",
      "required": "True"
    },
    "axis": {
      "type": "string",
      "title": "Axis",
      "description": "Axis to stack. One of 'c', 'z', 't'.",
      "required": "False",
      "default": "z"
    },
    "preview": {
      "type": "boolean",
      "title": "Preview example output of this plugin",
      "description": "Generate an output preview.",
      "required": "False"
    }
  }
}