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Signed-off-by: Wenqi Li <[email protected]>
part of #5626
### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.
Signed-off-by: Wenqi Li <[email protected]>
Copy file name to clipboardExpand all lines: docs/source/whatsnew_1_1.md
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## Digital pathology workflows
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Hover-Net is a model for simultaneous segmentation and classification of nuclei in multi-tissue histology images (Graham et al. Medical Image Analysis, 2019).
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We have added support for this model in MONAI by implementing several new components, enhancing existing ones and providing pipelines and examples for training, validation and inference.
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## Experiment management for MONAI bundle
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In this release, experiment management features are integrated with MONAI bundle.
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It provides essential APIs for managing the end-to-end model bundle lifecycle.
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Users can start tracking experiments by, for example, appending `--tracking "mlflow"` to the training or inference commands to enable the MLFlow-based management.
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running Auto3DSeg on the HECKTOR22 challenge dataset is available in MONAI
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Tutorials. The tutorial is based on [the HECKTOR22 challenge 1st place solution](https://arxiv.org/abs/2209.10809).
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- A new improved version of `Segresnet` Algo is now available in `AutoRunner`.
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In this version, data caching is more efficient and the preprocessing transforms are more flexible.
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The workflow progresses including the timings of steps are written to console output as well as a YAML file.
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- Automatic customization and optimization of the model training configuration
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can be achieved according to the GPU devices used. The feature
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focuses on determining parameters including batch size of model
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- The `mednist_reg` model demonstrates how to build image registration workflows in MONAI bundle
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format. The model uses a ResNet and spatial transformer for hand X-ray image registration based on
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