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Update docs for final release (#835)
* Update docs for final release Signed-off-by: SACHIDANAND ALLE <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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README.md

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### [Current/Stable Version](https://pypi.org/project/monailabel/#history)
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```bash
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pip install "monailabel>=0.4*" -U
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pip install monailabel -U
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```
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### Development version

docs/images/DSAPerf1.png

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docs/images/DSAPerf2.png

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docs/images/DSAPerf3.png

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plugins/dsa/README.md

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Upload new Task (under Slicer CLI Web Tasks) using the above docker image. This will add/enable MONAILabel under
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Analysis Page.
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![image](https://user-images.githubusercontent.com/7339051/157100606-a281e038-5923-43a8-bb82-8fccae51fcff.png)
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![image](../../docs/images/dsa.jpg)
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> **NOTE::** Provide

sample-apps/pathology/README.md

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# Pathology Use Case
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> _This App is currently under active development._
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### Overview
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This is a reference app to run infer + train tasks to segment Nuclei. It comes with following 2 pre-trained
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pip install -r requirements.txt
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```
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> Install [Openslide](https://openslide.org/) binaries manually and make sure .dll or .so files for openslide are in system load path. For windows, make sure **&lt;openslide_folder&gt;**/bin is added in PATH environment.
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> For ubuntu: `apt install openslide-tools`
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> Install [Openslide](https://openslide.org/) binaries manually and make sure .dll or .so files for openslide are in system load path.
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> - For windows, make sure **&lt;openslide_folder&gt;**/bin is added in PATH environment.
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> - For ubuntu: `apt install openslide-tools`
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#### FileSystem as Datastore
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```bash
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# download sample wsi image (skip this if you already have some)
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mkdir sample_wsi
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cd sample_wsi
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wget https://demo.kitware.com/histomicstk/api/v1/item/5d5c07539114c049342b66fb/download
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cd -
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# run server
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./monailabel/scripts/monailabel start_server --app sample-apps/pathology --studies datasets/wsi
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# download sample wsi image (skip this if you already have some)
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mkdir sample_wsi
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cd sample_wsi
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wget https://demo.kitware.com/histomicstk/api/v1/item/5d5c07539114c049342b66fb/download
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cd -
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# run server
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./monailabel/scripts/monailabel start_server --app sample-apps/pathology --studies datasets/wsi
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```
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###### QuPath
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![image](https://user-images.githubusercontent.com/7339051/157100606-a281e038-5923-43a8-bb82-8fccae51fcff.png)
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### Performance Benchmarking
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The performance benchmarking is done using MONAILabel server and DSA client. All the details are
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captured [here](https://docs.google.com/spreadsheets/d/1TeSOGzcTeeIThEvd_eflJNx0hhZiELNGBiYzwKyYEFg/edit?usp=sharing).
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Following is summary of the same:
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- NucleiDetection (CPU Based DSA Algorithm)
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- Segmentation/DeepEdit (MONAILabel models)
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<table>
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<tr>
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<td colspan="2"><img src="../../docs/images/DSAPerf1.png"/></td>
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</tr>
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<tr>
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<td><img src="../../docs/images/DSAPerf2.png"/></td>
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<td><img src="../../docs/images/DSAPerf3.png"/></td>
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</tr>
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</table>

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