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spelling + dependency cleanup
Signed-off-by: bluna301 <[email protected]>
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examples/apps/cchmc_ped_abd_ct_seg_app/README.md

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MONGODB_IP_DOCKER=172.17.0.1 # default Docker bridge network IP
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```
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Prior to packaging into a MAP, the MongoDB credentials should be harcoded into the `MongoDBWriterOperator`.
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Prior to packaging into a MAP, the MongoDB credentials should be hardcoded into the `MongoDBWriterOperator`.
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The MONAI Deploy Express MongoDB Docker container (`mdl-mongodb`) needs to be connected to the Docker bridge network in order for the MongoDB write to be successful. Executing the following command in a MONAI Deploy Express terminal will establish this connection:
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examples/apps/cchmc_ped_abd_ct_seg_app/app.py

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# series selection rule in JSON, which selects for axial CT series; flexible ST choices:
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# StudyDescription: matches any value
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# Modality: matches "CT" value (case-insensitive); filters out non-CT modalities
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# ImageType: matches value that conatins "PRIMARY", "ORIGINAL", and "AXIAL"; filters out most cor and sag views
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# ImageType: matches value that contains "PRIMARY", "ORIGINAL", and "AXIAL"; filters out most cor and sag views
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# SeriesDescription: matches any values that do not contain "cor" or "sag" (case-insensitive); filters out cor and sag views
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# SliceThickness: supports list, string, and numerical matching:
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# [3, 5]: matches ST values beween 3 and 5
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# [3, 5]: matches ST values between 3 and 5
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# "^(5(\\\\.0+)?|5)$": RegEx; matches ST values of 5, 5.0, 5.00, etc.
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# 5: matches ST values of 5, 5.0, 5.00, etc.
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# all valid series will be selected; downstream operators only perform inference and write outputs for 1st selected series

examples/apps/cchmc_ped_abd_ct_seg_app/requirements.txt

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# pytz for MongoDB Timestamp
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pytz>=2024.1
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# holoscan installation; python 3.8-3.11 is required to install V2.0.0
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holoscan==2.0.0
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# MONAI Deploy App SDK package installation
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monai-deploy-app-sdk

requirements-examples.txt

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scikit-image>=0.17.2
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pydicom>=2.3.0
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PyPDF2>=2.11.1
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types-pytz>=2024.1.0.20240203
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highdicom>=0.18.2
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SimpleITK>=2.0.0
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Pillow>=8.4.0

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