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@article{Barker:2022aa,
	abstract = {Research software is a fundamental and vital part of research, yet significant challenges to discoverability, productivity, quality, reproducibility, and sustainability exist. Improving the practice of scholarship is a common goal of the open science, open source, and FAIR (Findable, Accessible, Interoperable and Reusable) communities and research software is now being understood as a type of digital object to which FAIR should be applied. This emergence reflects a maturation of the research community to better understand the crucial role of FAIR research software in maximising research value. The FAIR for Research Software (FAIR4RS) Working Group has adapted the FAIR Guiding Principles to create the FAIR Principles for Research Software (FAIR4RS Principles). The contents and context of the FAIR4RS Principles are summarised here to provide the basis for discussion of their adoption. Examples of implementation by organisations are provided to share information on how to maximise the value of research outputs, and to encourage others to amplify the importance and impact of this work.},
	author = {Barker, Michelle and Chue Hong, Neil P. and Katz, Daniel S. and Lamprecht, Anna-Lena and Martinez-Ortiz, Carlos and Psomopoulos, Fotis and Harrow, Jennifer and Castro, Leyla Jael and Gruenpeter, Morane and Martinez, Paula Andrea and Honeyman, Tom},
	doi = {10.1038/s41597-022-01710-x},
	isbn = {2052-4463},
	journal = {Scientific Data},
	number = {1},
	pages = {622},
	title = {Introducing the FAIR Principles for research software},
	url = {https://doi.org/10.1038/s41597-022-01710-x},
	volume = {9},
	year = {2022},
	bdsk-url-1 = {https://doi.org/10.1038/s41597-022-01710-x}}

@article{Matplotlib_2007,
	author = {Hunter, John D.},
	doi = {10.1109/MCSE.2007.55},
	journal = {Computing in Science & Engineering},
	keywords = {Graphics;Interpolation;Equations;Graphical user interfaces;Packaging;Image generation;User interfaces;Operating systems;Computer languages;Programming profession;Python;scripting languages;application development;scientific programming},
	number = {3},
	pages = {90-95},
	title = {Matplotlib: A 2D Graphics Environment},
	volume = {9},
	year = {2007},
	bdsk-url-1 = {https://doi.org/10.1109/MCSE.2007.55}}

@inproceedings{McKinney-2010,
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	booktitle = {{P}roceedings of the 9th {P}ython in {S}cience {C}onference},
	doi = {10.25080/Majora-92bf1922-00a},
	editor = {{S}t\'efan van der {W}alt and {J}arrod {M}illman},
	pages = {56 - 61},
	title = {{D}ata {S}tructures for {S}tatistical {C}omputing in {P}ython},
	year = {2010},
	bdsk-url-1 = {https://doi.org/10.25080/Majora-92bf1922-00a}}

@inproceedings{binder-2018,
	author = {{Project Jupyter} and {M}atthias {B}ussonnier and {J}essica {F}orde and {J}eremy {F}reeman and {B}rian {G}ranger and {T}im {H}ead and {C}hris {H}oldgraf and {K}yle {K}elley and {G}ladys {N}alvarte and {A}ndrew {O}sheroff and {M} {P}acer and {Y}uvi {P}anda and {F}ernando {P}erez and {B}enjamin {R}agan-{K}elley and {C}arol {W}illing},
	booktitle = {{P}roceedings of the 17th {P}ython in {S}cience {C}onference},
	doi = {10.25080/Majora-4af1f417-011},
	editor = {{F}atih {A}kici and {D}avid {L}ippa and {D}illon {N}iederhut and {M} {P}acer},
	pages = {113 - 120},
	title = {{B}inder 2.0 - {R}eproducible, interactive, sharable environments for science at scale},
	year = {2018},
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@inproceedings{boerner_access_2023,
	address = {New York, NY, USA},
	author = {Boerner, Timothy J. and Deems, Stephen and Furlani, Thomas R. and Knuth, Shelley L. and Towns, John},
	booktitle = {Practice and {Experience} in {Advanced} {Research} {Computing} 2023: {Computing} for the {Common} {Good}},
	doi = {10.1145/3569951.3597559},
	isbn = {978-1-4503-9985-2},
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	pages = {173--176},
	publisher = {Association for Computing Machinery},
	series = {{PEARC} '23},
	shorttitle = {{ACCESS}},
	title = {{ACCESS}: {Advancing} {Innovation}: {NSF}'s {Advanced} {Cyberinfrastructure} {Coordination} {Ecosystem}: {Services} \& {Support}},
	url = {https://dl.acm.org/doi/10.1145/3569951.3597559},
	urldate = {2025-03-08},
	year = {2023},
	bdsk-url-1 = {https://dl.acm.org/doi/10.1145/3569951.3597559},
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	address = {New York, NY, USA},
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	booktitle = {Practice and {Experience} in {Advanced} {Research} {Computing} 2021: {Evolution} {Across} {All} {Dimensions}},
	doi = {10.1145/3437359.3465565},
	isbn = {978-1-4503-8292-2},
	month = jul,
	pages = {1--8},
	publisher = {Association for Computing Machinery},
	series = {{PEARC} '21},
	shorttitle = {Jetstream2},
	title = {Jetstream2: {Accelerating} cloud computing via {Jetstream}},
	url = {https://dl.acm.org/doi/10.1145/3437359.3465565},
	urldate = {2025-03-08},
	year = {2021},
	bdsk-url-1 = {https://dl.acm.org/doi/10.1145/3437359.3465565},
	bdsk-url-2 = {https://doi.org/10.1145/3437359.3465565}}

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	author = {Cockett, Rowan and Purves, Steve and Koch, Franklin and Morrison, Mike},
	doi = {10.25080/NKVC9349},
	issn = {2575-9752},
	journal = {scipy},
	language = {en},
	month = jun,
	pages = {121--136},
	title = {Continuous {Tools} for {Scientific} {Publishing}},
	url = {https://proceedings.scipy.org/articles/NKVC9349},
	urldate = {2025-02-06},
	year = {2024},
	bdsk-url-1 = {https://proceedings.scipy.org/articles/NKVC9349},
	bdsk-url-2 = {https://doi.org/10.25080/NKVC9349}}

@misc{mystmd_2025,
	author = {Rowan Cockett and Franklin Koch and Steve Purves and Angus Hollands and Yuxi Wang and Dylan Grandmont and Chris Holdgraf and Andrea and Jan-Hendrik M{\"u}ller and Spencer Lyon and Cristian Le and Jim Madge and wwx and Sugan Reden and Yuanhao Geng and Ryan Lovett and Mikkel Roald-Arb{\o}l and Matt McKay and Matthew Brett and M Bussonnier and Mridul Seth and Nicolas M. Thi{\'e}ry and Raniere Silva and Sarah Brown and Sinan Bekar and Tavin Cole and Thad Guidry and Toby Driscoll},
	copyright = {MIT License},
	doi = {10.5281/ZENODO.14805610},
	month = feb,
	publisher = {Zenodo},
	shorttitle = {jupyter-book/mystmd},
	title = {mystmd v1.4.0},
	url = {https://zenodo.org/doi/10.5281/zenodo.14805610},
	urldate = {2025-03-08},
	year = {2025},
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@misc{jupyterbook_2020,
	author = {{Executable Books Community}},
	copyright = {Open Access},
	doi = {10.5281/ZENODO.2561065},
	keywords = {data science, jupyter, publishing, scholarship},
	month = feb,
	publisher = {Zenodo},
	title = {Jupyter {Book}},
	url = {https://zenodo.org/record/2561065},
	urldate = {2025-03-08},
	year = {2020},
	bdsk-url-1 = {https://zenodo.org/record/2561065},
	bdsk-url-2 = {https://doi.org/10.5281/ZENODO.2561065}}

@misc{atmoscol2023,
	author = {Alfonso Ladino and Nicole Rivera and Max Grover},
	copyright = {Creative Commons Attribution 4.0 International},
	doi = {10.5281/ZENODO.8316796},
	month = oct,
	publisher = {Zenodo},
	shorttitle = {aladinor/{Atmoscol2023}},
	title = {aladinor/{Atmoscol2023}: {Steable} version 0.1.0-{Beta}},
	url = {https://zenodo.org/doi/10.5281/zenodo.8316796},
	urldate = {2025-06-09},
	year = {2023},
	bdsk-url-1 = {https://zenodo.org/doi/10.5281/zenodo.8316796},
	bdsk-url-2 = {https://doi.org/10.5281/ZENODO.8316796}}

@misc{ladino_erad_2024,
	author = {Ladino, Alfonso and del Moral M{\'e}ndez, Anna and Javornik, Brenda and Michelson, Daniel and Wolfensberger, Daniel and Ghiggi, Gionata and DeHart, Jen and Figueras i Ventura, Jordi and Giles, Julian and M{\"u}hlbauer, Kai and Grover, Maxwell and Dixon, Mike and Jackson, Robert and Collis, Scott and Cha, Ting-Yu and contributors, ERAD2024 Open Radar Science Shortcourse},
	doi = {10.5281/zenodo.13694511},
	month = sep,
	publisher = {Zenodo},
	title = {{ERAD} 2024 {Open} {Radar} {Science} {Shortcourse}},
	url = {https://zenodo.org/records/13694511},
	urldate = {2025-03-10},
	year = {2024},
	bdsk-url-1 = {https://zenodo.org/records/13694511},
	bdsk-url-2 = {https://doi.org/10.5281/zenodo.13694511}}

@inproceedings{pimentel_2019,
	author = {Pimentel, Jo{\~a}o Felipe and Murta, Leonardo and Braganholo, Vanessa and Freire, Juliana},
	booktitle = {2019 {IEEE}/{ACM} 16th {International} {Conference} on {Mining} {Software} {Repositories} ({MSR})},
	doi = {10.1109/MSR.2019.00077},
	file = {IEEE Xplore Abstract Record:/Users/brianrose/Zotero/storage/MDAB5D8U/8816763.html:text/html},
	keywords = {Best practices, github, jupyter notebook, Media, Programming, Python, reproducibility, Testing, Tools},
	month = may,
	note = {ISSN: 2574-3864},
	pages = {507--517},
	title = {A {Large}-{Scale} {Study} {About} {Quality} and {Reproducibility} of {Jupyter} {Notebooks}},
	url = {https://ieeexplore.ieee.org/document/8816763},
	urldate = {2025-03-08},
	year = {2019},
	bdsk-url-1 = {https://ieeexplore.ieee.org/document/8816763},
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@article{wilkinson_fair_2016,
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	copyright = {2016 The Author(s)},
	doi = {10.1038/sdata.2016.18},
	file = {Full Text PDF:/Users/brianrose/Zotero/storage/YX8Y3T6Q/Wilkinson et al. - 2016 - The FAIR Guiding Principles for scientific data management and stewardship.pdf:application/pdf},
	issn = {2052-4463},
	journal = {Scientific Data},
	keywords = {Publication characteristics, Research data},
	language = {en},
	month = mar,
	note = {Publisher: Nature Publishing Group},
	number = {1},
	pages = {160018},
	title = {The {FAIR} {Guiding} {Principles} for scientific data management and stewardship},
	url = {https://www.nature.com/articles/sdata201618},
	urldate = {2025-02-06},
	volume = {3},
	year = {2016},
	bdsk-url-1 = {https://www.nature.com/articles/sdata201618},
	bdsk-url-2 = {https://doi.org/10.1038/sdata.2016.18}}

@book{dask_2016,
	author = {{Dask Development Team}},
	title = {Dask: {Library} for dynamic task scheduling},
	url = {https://dask.org},
	year = {2016},
	bdsk-url-1 = {http://dask.pydata.org}}

@article{xarray_2017,
	author = {Hoyer, Stephan and Hamman, Joe},
	doi = {10.5334/jors.148},
	issn = {2049-9647},
	journal = {Journal of Open Research Software},
	language = {en-US},
	month = apr,
	number = {1},
	shorttitle = {xarray},
	title = {xarray: {N}-{D} labeled {Arrays} and {Datasets} in {Python}},
	url = {https://openresearchsoftware.metajnl.com/articles/10.5334/jors.148},
	urldate = {2025-03-08},
	volume = {5},
	year = {2017},
	bdsk-url-1 = {https://openresearchsoftware.metajnl.com/articles/10.5334/jors.148},
	bdsk-url-2 = {https://doi.org/10.5334/jors.148}}

@misc{cartopy_2024,
	author = {Phil Elson and Elliott Sales de Andrade and Greg Lucas and Ryan May and Richard Hattersley and Ed Campbell and Ruth Comer and Andrew Dawson and Bill Little and Stephane Raynaud and scmc72 and Alan D. Snow and lgolston and Byron Blay and Peter Killick and lbdreyer and Patrick Peglar and Nat Wilson and Andrew and Jon Szymaniak and Adrien Berchet and Corinne Bosley and Luke Davis and Filipe and John Krasting and Matthew Bradbury and stephenworsley and Daniel Kirkham},
	copyright = {Creative Commons Attribution 4.0 International},
	doi = {10.5281/ZENODO.1182735},
	month = oct,
	publisher = {Zenodo},
	shorttitle = {{SciTools}/cartopy},
	title = {cartopy v0.24.1},
	url = {https://zenodo.org/doi/10.5281/zenodo.1182735},
	urldate = {2025-03-08},
	year = {2024},
	bdsk-url-1 = {https://zenodo.org/doi/10.5281/zenodo.1182735},
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@misc{pandas,
	annote = {Other
If you use this software, please cite it as below.},
	author = {{Pandas development team}},
	copyright = {BSD 3-Clause "New" or "Revised" License},
	doi = {10.5281/ZENODO.3509134},
	keywords = {data science, python},
	month = sep,
	publisher = {Zenodo},
	shorttitle = {pandas-dev/pandas},
	title = {pandas-dev/pandas: {Pandas}},
	url = {https://zenodo.org/doi/10.5281/zenodo.3509134},
	urldate = {2025-03-08},
	year = {2024},
	bdsk-url-1 = {https://zenodo.org/doi/10.5281/zenodo.3509134},
	bdsk-url-2 = {https://doi.org/10.5281/ZENODO.3509134}}

@article{Harris_array_2020,
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	copyright = {2020 The Author(s)},
	doi = {10.1038/s41586-020-2649-2},
	issn = {1476-4687},
	journal = {Nature},
	keywords = {Computational neuroscience, Computational science, Computer science, Software, Solar physics},
	language = {en},
	month = sep,
	note = {Publisher: Nature Publishing Group},
	number = {7825},
	pages = {357--362},
	title = {Array programming with {NumPy}},
	url = {https://www.nature.com/articles/s41586-020-2649-2},
	urldate = {2025-03-08},
	volume = {585},
	year = {2020},
	bdsk-url-1 = {https://www.nature.com/articles/s41586-020-2649-2},
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@article{Rose_GEO_OSE_2023,
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	doi = {10.5281/zenodo.8184298},
	language = {eng},
	month = jul,
	note = {Publisher: Zenodo},
	shorttitle = {Project Pythia GEO OSE proposal},
	title = {Collaborative {Research}: {GEO} {OSE} {TRACK} 2: {Project} {Pythia} and {Pangeo}: {Building} an inclusive geoscience community through accessible, reusable, and reproducible workflows},
	url = {https://zenodo.org/records/8184298},
	urldate = {2025-02-06},
	year = {2023},
	bdsk-url-1 = {https://zenodo.org/records/8184298},
	bdsk-url-2 = {https://doi.org/10.5281/zenodo.8184298}}

@misc{Foundations,
	author = {Rose, Brian E. J. and Kent, Julia and Tyle, Kevin and Clyne, John and Banihirwe, Anderson and Camron, Drew and May, Ryan and Grover, Maxwell and Ford, Robert R. and Paul, Kevin and Morley, James and Eroglu, Orhan and Kailyn, Lily and Zacharias, Anissa},
	doi = {10.5281/zenodo.14759276},
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	month = jan,
	publisher = {Zenodo},
	title = {Pythia {Foundations}},
	url = {https://zenodo.org/records/14759276},
	urldate = {2025-02-06},
	year = {2025},
	bdsk-url-1 = {https://zenodo.org/records/14759276},
	bdsk-url-2 = {https://doi.org/10.5281/zenodo.14759276}}

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	doi = {10.6084/m9.figshare.5361094.v1},
	language = {en},
	month = aug,
	title = {Pangeo {NSF} {Earthcube} {Proposal}},
	url = {https://figshare.com/articles/journal_contribution/Pangeo_NSF_Earthcube_Proposal/5361094/1},
	urldate = {2025-03-08},
	year = {2017},
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	bdsk-url-2 = {https://doi.org/10.6084/m9.figshare.5361094.v1}}