Merge pull request #123 from ProteinGym/feat/create-benchmark #108

	name: CI pipeline

	on:
	workflow_dispatch:
	pull_request:
	merge_group:

	push:
	branches:
	- main
	tags:
	- v*

	permissions:
	contents: read

	jobs:
	lint:
	name: lint
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4

	# In order to install the private repo: proteingym-base, PAT is needed for now.
	- name: Configure git credentials with PAT
	run: git config --global url."https://x-access-token:${{ secrets.PERSONAL_ACCESS_TOKEN }}@github.com/".insteadOf "https://github.com/"

	- name: Install uv
	uses: astral-sh/setup-uv@v5

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version-file: ".python-version"

	- name: Install the project
	run: uv sync --all-extras --dev

	- name: Ruff check
	run: uv run ruff check src tests

	test:
	name: test
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4

	- name: Install uv
	uses: astral-sh/setup-uv@v5

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version-file: ".python-version"

	- name: Install the project
	run: uv sync --all-extras --dev

	- name: Run tests
	run: uv run pytest tests

	- name: Upload coverage reports to Codecov
	uses: codecov/codecov-action@v5
	with:
	token: ${{ secrets.CODECOV_TOKEN }}

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