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## Datasets
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The datasets are included in the [dataset](datasets/) folder.
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## Benchmark
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The benchmark is defined in the [benchmark](benchmark/) folder, where there exist two games: supervised and zero-shot.
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The datasets are included in the [dataset](datasets/) folder, where each dataset goes into a subfolder.
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In order to build the archived file for each dataset, [pg2-dataset](https://github.com/ProteinGym2/pg2-dataset) is used.
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You can reference [this guide](https://github.com/ProteinGym2/pg2-dataset?tab=readme-ov-file#archive-data) to build the archived dataset.
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## Benchmark
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The benchmark is defined in the [benchmark](benchmark/) folder, where there exist two games: supervised and zero-shot.
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### Local environment
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There are two games to benchmark: supervised and zero-shot. Each game has its selected list of models and datasets defined in `dvc.yaml`.
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uv run pg2-benchmark dataset generate-dummy-data supervised/data/dummy/charge_ladder.csv --n-rows 5 --sequence-length 100
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```
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