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2020
2121## Datasets
2222
23- The datasets are included in the [ dataset] ( datasets/ ) folder.
24-
25- ## Benchmark
26-
27- The benchmark is defined in the [ benchmark] ( benchmark/ ) folder, where there exist two games: supervised and zero-shot.
23+ The datasets are included in the [ dataset] ( datasets/ ) folder, where each dataset goes into a subfolder.
2824
2925In order to build the archived file for each dataset, [ pg2-dataset] ( https://github.com/ProteinGym2/pg2-dataset ) is used.
3026
3127You can reference [ this guide] ( https://github.com/ProteinGym2/pg2-dataset?tab=readme-ov-file#archive-data ) to build the archived dataset.
3228
29+ ## Benchmark
30+
31+ The benchmark is defined in the [ benchmark] ( benchmark/ ) folder, where there exist two games: supervised and zero-shot.
32+
3333### Local environment
3434
3535There are two games to benchmark: supervised and zero-shot. Each game has its selected list of models and datasets defined in ` dvc.yaml ` .
@@ -109,3 +109,4 @@ You can generate dummy data by the following command:
109109uv run pg2-benchmark dataset generate-dummy-data supervised/data/dummy/charge_ladder.csv --n-rows 5 --sequence-length 100
110110```
111111
112+
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