Remove yq

Author: tintinrevient

.github/workflows/cml.yaml

@@ -24,12 +24,12 @@ jobs:
       - name: Generate datasets and models
         run: |
           # Supervised game: Generate datasets and models
-          uv run proteingym-base list-datasets datasets | jq 'map(select(.name == "charge_ladder" or .name == "NEIME_2019")) | map({name: .name, input_filename: .input_filename})' | yq -p json -o json '. = {"datasets": .}' > benchmark/supervised/local/datasets.json
-          uv run proteingym-base list-models models | jq 'map(select(.name == "pls")) | map({name: .name, input_filename: .input_filename})' | yq -p json -o json '. = {"models": .}' > benchmark/supervised/local/models.json
+          uv run proteingym-base list-datasets datasets | jq 'map(select(.name == "charge_ladder" or .name == "NEIME_2019")) | map({name: .name, input_filename: .input_filename}) | . = {"datasets": .}' > benchmark/supervised/local/datasets.json
+          uv run proteingym-base list-models models | jq 'map(select(.name == "pls")) | map({name: .name, input_filename: .input_filename}) | . = {"models": .}' > benchmark/supervised/local/models.json
           
           # Zero-shot game: Generate datasets and models
-          uv run proteingym-base list-datasets datasets | jq 'map(select(.name == "ranganathan")) | map({name: .name, input_filename: .input_filename})' | yq -p json -o json '. = {"datasets": .}' > benchmark/zero_shot/local/datasets.json
-          uv run proteingym-base list-models models | jq 'map(select(.name == "esm")) | map({name: .name, input_filename: .input_filename})' | yq -p json -o json '. = {"models": .}' > benchmark/zero_shot/local/models.json
+          uv run proteingym-base list-datasets datasets | jq 'map(select(.name == "ranganathan")) | map({name: .name, input_filename: .input_filename}) | . = {"datasets": .}' > benchmark/zero_shot/local/datasets.json
+          uv run proteingym-base list-models models | jq 'map(select(.name == "esm")) | map({name: .name, input_filename: .input_filename}) | . = {"models": .}' > benchmark/zero_shot/local/models.json
           
       - name: Run model validation
         env: