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259 lines (259 loc) · 12.6 KB
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{
"id": "FragPipe_20250621_141134",
"software_name": "FragPipe",
"software_version": "23.0",
"search_engine": "MSFragger",
"search_engine_version": "4.2",
"ident_fdr_psm": 0.01,
"ident_fdr_peptide": "",
"ident_fdr_protein": 0.01,
"enable_match_between_runs": true,
"precursor_mass_tolerance": "[-20 ppm, 20 ppm]",
"fragment_mass_tolerance": "[-20 ppm, 20 ppm]",
"enzyme": "Trypsin/P",
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"is_temporary": false,
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"CV_median": 0.15670231763673428,
"CV_q75": 0.28874504354940633,
"CV_q90": 0.4590499101944253,
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},
"median_abs_epsilon_global": 0.21089000101121513,
"mean_abs_epsilon_global": 0.350477009629788,
"median_abs_epsilon_eq_species": 0.24936521432141193,
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"mean_abs_epsilon_precision_global": 0.34876261217585264,
"median_abs_epsilon_precision_eq_species": 0.25312582816036056,
"mean_abs_epsilon_precision_eq_species": 0.4376048991311796,
"nr_feature": 96672,
"comments": "",
"proteobench_version": "0.17.0",
"old_new": "new",
"semi_enzymatic": false,
"fixed_mods": "C[Carbamidomethyl]",
"variable_mods": "M[Oxidation], N-term[Acetyl]",
"max_mods": 3,
"min_precursor_charge": 1,
"max_precursor_charge": NaN,
"quantification_method": "IonQuant",
"protein_inference": "ProteinProphet: --maxppmdiff 2000000",
"abundance_normalization_ions": 1,
"postprocessing_performed": false,
"postprocessing_description": NaN,
"min_precursor_mz": NaN,
"max_precursor_mz": 5000,
"min_fragment_mz": NaN,
"max_fragment_mz": NaN,
"submission_comments": "\n\n ### Parameter changes detected:\n- **ident_fdr_peptide**: `0.01` \u2192 ``\n- **quantification_method**: `nan` \u2192 `IonQuant`\n- **abundance_normalization_ions**: `nan` \u2192 `1`\n\nDataset URL: https://proteobench.cubimed.rub.de/datasets/c8041832abc601c03d5d021e0f0df6f48ae08428/"
}