Merge pull request #29 from PumasAI-Labs/an/oneday

Add a one day workshop

Author: andreasnoack

OneDay.md

@@ -0,0 +1,21 @@
+# A one day Pumas workshop
+
+- 🔨 Hands-on Workshop Sessions
+- ☕ Breaks
+- 🍽️ Lunch Break
+
+## Schedule
+
+| Time          | Duration | Activity                                                 | Files |
+|---------------|----------|----------------------------------------------------------|-------|
+| 09:00 - 09:30 | 30m      | Welcome and Environment Setup                            |       |
+| 09:30 - 10:15 | 45m      | Data Wrangling                                           | [lecture files](./TeachingMaterial/data_read_wrangle/) |
+| 10:15 - 10:30 | 15m      | ☕ Morning Break                                          |       |
+| 10:30 - 11:15 | 45m      | PopPK Modeling                                           | [lecture files](./TeachingMaterial/population_pk/) |
+| 11:15 - 12:30 | 75m      | 🔨 Data Wrangling and PopPK Hands-on                     | [data reading](./Exercises/05-data_reading_exercise.jl) ([solutions](./Solutions/05-data_reading_solution.jl)) </br> [data wrangling](./Exercises/06-data_wrangling_exercise.jl) ([solutions](./Solutions/06-data_wrangling_solution.jl)) |
+| 12:30 - 13:30 | 60m      | 🍽️ Lunch Break                                           |       |
+| 13:30 - 14:15 | 45m      | Uncertainty Estimation and Model Diagnostics             | [lecture files](./TeachingMaterial/population_pk/) |
+| 14:15 - 15:15 | 60m      | 🔨 Uncertainty Estimation and Model Diagnostics Hands-on | [PopPK exerices](./Exercises/07-pk_model_exercise.jl) ([solutions](./Solutions/07-pk_model_solutions.jl)) | 
+| 15:15 - 15:30 | 15m      | ☕ Afternoon Break                                        |       |
+| 15:30 - 16:15 | 45m      | PopPK and Exposure Simulation                            | [lecture files](./TeachingMaterial/population_pk_continued/) |
+| 16:15 - 17:00 | 45m      | 🔨 PopPK and Exposure Simulation Hands-on                | Use lecture file |

Pumas_Workshop_March2025.pptx

@@ -1,5 +1,6 @@
-# Pumas-NLME-Handson Workshop
+# Pumas NLME Handson Workshop
 
 Course material for Pumas workshops
 
-A [three days Pumas workshop](ThreeDay.md)
+- [One day Pumas workshop](OneDay.md)
+- [Three days Pumas workshop](ThreeDay.md)

README.md

@@ -29,7 +29,7 @@ using CSV, DataFrames, Logging
 @info "Note: Using missingstring='.' to handle NONMEM-style missing values"
 
 df = CSV.read(
-    joinpath(@__DIR__, "..", "..", "..", "data", "warfarin.csv"),
+    joinpath(@__DIR__, "..", "..", "data", "warfarin.csv"),
     DataFrame;
     missingstring=["."]
 )

TeachingMaterial/data_read_wrangle/01-data_reading.jl

@@ -20,7 +20,7 @@ Required data elements for Pumas Population:
 
 # Import the previous data wrangling example for demonstration
 # This gives us the df_wide DataFrame
-include(joinpath("..","05-data_read_wrangle","03-data_wrangling.jl"))
+include(joinpath("..","data_read_wrangle","03-data_wrangling.jl"))
 
 # Display the dataset:
 vscodedisplay(df_wide)

TeachingMaterial/population_pk/01-read_pumas_data.jl

@@ -5,8 +5,10 @@
 # The simobs function is used to simulate from Pumas models
 
 # Import the previous code that returns the fitted Pumas model
-include(joinpath("..","..", "..", "Day1", "01-TeachingMaterial",
-    "06-population_pk", "03-pk_model_fitting.jl")) 
+include(joinpath("..",
+    "population_pk",
+    "03-pk_model_fitting.jl"
+)) 
 
 # -----------------------------------------------------------------------------
 # 1. PACKAGES FOR SIMULATIONS

TeachingMaterial/population_pk_continued/01-pk_model_simulation.jl

@@ -30,13 +30,13 @@
 
 ### Exercises
 
-1. [Variables](./Exercises/01-variables_exercise.jl) - [Solution](./Solutions/01-variables_exercise.jl)
-2. [Syntax](./Exercises/02-syntax_exercise.jl) - [Solution](./Solutions/02-syntax_exercise.jl)
-3. [Functions](./Exercises/03-functions_exercise.jl) - [Solution](./Solutions/03-functions_exercise.jl)
-4. [Functional programming](./Exercises/04-functional_exercise.jl) - [Solution](./Solutions/04-functional_exercise.jl)
-5. [Data reading](./Exercises/05-data_reading_exercise.jl) - [Solution](./Solutions/05-data_reading_exercise.jl)
-5. [Data wrangling](./Exercises/06_data_wrangling_exercise.jl) - [Solution](./Solutions/06_data_wrangling_exercise.jl)
-6. [Population PK](./Exercises/07-pk_model_exercise.jl) - [Solution](./Solutions/07-pk_model_exercise.jl)
+1. [Variables](./Exercises/01-variables_exercise.jl) - [Solution](./Solutions/01-variables_solution.jl)
+2. [Syntax](./Exercises/02-syntax_exercise.jl) - [Solution](./Solutions/02-syntax_solution.jl)
+3. [Functions](./Exercises/03-functions_exercise.jl) - [Solution](./Solutions/03-functions_solution.jl)
+4. [Functional programming](./Exercises/04-functional_exercise.jl) - [Solution](./Solutions/04-functional_solution.jl)
+5. [Data reading](./Exercises/05-data_reading_exercise.jl) - [Solution](./Solutions/05-data_reading_solution.jl)
+5. [Data wrangling](./Exercises/06_data_wrangling_exercise.jl) - [Solution](./Solutions/06_data_wrangling_solution.jl)
+6. [Population PK](./Exercises/07-pk_model_exercise.jl) - [Solution](./Solutions/07-pk_model_solution.jl)
 
 ## Day 2: Simulations & PopPK/PD Modeling