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Merge pull request #32 from PumasAI-Labs/dw/schedule_sa
Update schedule for SA workshop
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‎ThreeDays.md‎

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- ☕ Breaks
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- 🍽️ Lunch Break
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## Day 1: Julia Fundamentals, Data Handling & PopPK Modeling
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## Day 1: PopPK Modeling and Julia Fundamentals
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| Time | Duration | Activity |
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|---------------|----------|--------------------------------------------------------|
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| 09:00 - 09:30 | 30m | Welcome and Environment Setup |
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| 09:30 - 10:45 | 75m | Introduction to Julia |
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| 09:30 - 10:45 | 75m | PopPK Modeling I |
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| 10:45 - 11:00 | 15m | ☕ Morning Break |
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| 11:00 - 11:45 | 45m | Working With Data in Julia |
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| 11:45 - 12:30 | 45m | 🔨 Julia Programming Hands-on |
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| 11:00 - 11:45 | 45m | PopPK Modeling II |
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| 11:45 - 12:30 | 45m | Introduction to Julia |
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| 12:30 - 13:30 | 60m | 🍽️ Lunch Break |
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| 13:30 - 14:15 | 45m | PopPK Modeling I |
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| 13:30 - 14:15 | 45m | Hands-on I |
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| 14:15 - 14:30 | 15m | ☕ Afternoon Break |
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| 14:30 - 15:15 | 45m | PopPK Modeling II |
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| 15:15 - 16:30 | 75m | 🔨 PopPK Modeling Hands-on |
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| 14:30 - 16:30 | 120m | Hands-On II |
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### Teaching Material
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1. [Variables](./TeachingMaterial/variables)
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2. [Syntax](./TeachingMaterial/syntax)
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3. [Functions](./TeachingMaterial/functions)
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4. [Functional programming](./TeachingMaterial/functional_programming)
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5. [Data reading and wrangling](./TeachingMaterial/data_read_wrangle)
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6. [Population PK](./TeachingMaterial/population_pk)
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1. [Data reading and wrangling](./TeachingMaterial/data_read_wrangle)
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2. [Population PK](./TeachingMaterial/population_pk)
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3. [Variables](./TeachingMaterial/variables)
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4. [Syntax](./TeachingMaterial/syntax)
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5. [Functions](./TeachingMaterial/functions)
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6. [Functional programming](./TeachingMaterial/functional_programming)
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### Exercises
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1. [Data reading](./Exercises/05-data_reading_exercise.jl) - [Solution](./Solutions/05-data_reading_solution.jl)
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2. [Data wrangling](./Exercises/06_data_wrangling_exercise.jl) - [Solution](./Solutions/06_data_wrangling_solution.jl)
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3. [Population PK](./Exercises/07-pk_model_exercise.jl) - [Solution](./Solutions/07-pk_model_solution.jl)
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### Optional Exercises
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1. [Variables](./Exercises/01-variables_exercise.jl) - [Solution](./Solutions/01-variables_solution.jl)
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2. [Syntax](./Exercises/02-syntax_exercise.jl) - [Solution](./Solutions/02-syntax_solution.jl)
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3. [Functions](./Exercises/03-functions_exercise.jl) - [Solution](./Solutions/03-functions_solution.jl)
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4. [Functional programming](./Exercises/04-functional_exercise.jl) - [Solution](./Solutions/04-functional_solution.jl)
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5. [Data reading](./Exercises/05-data_reading_exercise.jl) - [Solution](./Solutions/05-data_reading_solution.jl)
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5. [Data wrangling](./Exercises/06_data_wrangling_exercise.jl) - [Solution](./Solutions/06_data_wrangling_solution.jl)
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6. [Population PK](./Exercises/07-pk_model_exercise.jl) - [Solution](./Solutions/07-pk_model_solution.jl)
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## Day 2: Simulations & PopPK/PD Modeling
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| Time | Duration | Activity |
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|---------------|----------|---------------------------------------------------------|
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| 09:00 - 09:45 | 45m | Uncertainty Estimation and Model Diagnostics |
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| 09:45 - 10:45 | 60m | 🔨 Uncertainty Estimation and Model Diagnostics Hands-on |
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| 09:00 - 10:00 | 60m | Uncertainty Estimation and Model Diagnostics |
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| 10:00 - 10:45 | 45m | PopPK and Exposure Simulation |
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| 10:45 - 11:00 | 15m | ☕ Morning Break |
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| 11:00 - 11:45 | 45m | PopPK and Exposure Simulation |
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| 11:45 - 12:30 | 45m | 🔨 PopPK and Exposure Simulation Hands-on |
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| 11:00 - 11:45 | 45m | PopPK/PD Modeling |
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| 11:45 - 12:30 | 45m | PopPK/PD Model Simulation |
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| 12:30 - 13:30 | 60m | 🍽️ Lunch Break |
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| 13:30 - 14:15 | 45m | PopPK/PD Modeling |
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| 13:30 - 14:15 | 45m | Hands-on I |
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| 14:15 - 14:30 | 15m | ☕ Afternoon Break |
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| 14:30 - 15:15 | 45m | PopPK/PD Model Simulation |
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| 15:15 - 16:30 | 75m | 🔨 PopPK/PD Model Simulation Hands-on |
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| 14:30 - 16:30 | 120m | Hands-On II |
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### Teaching Material
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1. [Population PK, continued](./TeachingMaterial/population_pk_continued)
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2. [Population PKPK](./TeachingMaterial/population_pkpk)
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2. [Population PKPD](./TeachingMaterial/population_pkpd)
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3. [Covariate modeling](./TeachingMaterial/covariates)
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4. [Time-to-event modeling](./TeachingMaterial/TimeToEvent)
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| Time | Duration | Activity |
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|---------------|----------|--------------------------------------------------------|
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| 09:00 - 09:45 | 45m | Quarto and Non-Gaussian Random Effects Modeling |
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| 09:00 - 09:45 | 45m | Working with BLQ data |
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| 09:45 - 10:45 | 60m | 🔨 Non-Gaussian Random Effects Modeling |
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| 10:45 - 11:00 | 15m | ☕ Morning Break |
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| 11:00 - 11:45 | 45m | A viral model |
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| 14:30 - 15:15 | 45m | Discrete error models |
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| 15:15 - 16:30 | 75m | Q&A and Wrap-up |
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### Teaching Material
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1. [DeepPumas introduction](./Day3/DeepPumas)
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## Notes
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1. Each day includes 2+ hours of hands-on work
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2. Content follows the actual structure of provided materials
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3. Julia basics (Day 1) provide foundation for PopPK/PD modeling
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4. Progressive complexity from basic concepts to advanced applications
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5. Each topic is tied to specific example files for reference
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3. Progressive complexity from basic concepts to advanced applications
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4. Each topic is tied to specific example files for reference

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