requirements.txt

#
# This file is autogenerated by pip-compile with Python 3.9
# by the following command:
#
#    pip-compile --all-extras --output-file=requirements.txt
#
accessible-pygments==0.0.5
    # via pydata-sphinx-theme
alabaster==0.7.16
    # via sphinx
babel==2.17.0
    # via
    #   pydata-sphinx-theme
    #   sphinx
beautifulsoup4==4.13.4
    # via pydata-sphinx-theme
black==25.9.0
    # via pyprophet (setup.py)
certifi==2025.4.26
    # via requests
charset-normalizer==3.4.2
    # via requests
click==8.1.8
    # via
    #   black
    #   pyprophet
    #   pyprophet (setup.py)
    #   sphinx-click
contourpy==1.3.0
    # via matplotlib
cycler==0.12.1
    # via matplotlib
cython==3.2.4
    # via
    #   pyprophet
    #   pyprophet (setup.py)
docutils==0.21.2
    # via
    #   pydata-sphinx-theme
    #   sphinx
    #   sphinx-click
    #   sphinx-rtd-theme
duckdb==1.3.0
    # via
    #   duckdb-extension-sqlite-scanner
    #   duckdb-extensions
    #   pyprophet
    #   pyprophet (setup.py)
duckdb-extension-sqlite-scanner==1.3.0
    # via
    #   pyprophet
    #   pyprophet (setup.py)
duckdb-extensions==1.3.0
    # via
    #   pyprophet
    #   pyprophet (setup.py)
exceptiongroup==1.3.0
    # via pytest
execnet==2.1.1
    # via pytest-xdist
fonttools==4.60.2
    # via matplotlib
idna==3.10
    # via requests
imagesize==1.4.1
    # via sphinx
importlib-metadata==8.7.0
    # via sphinx
importlib-resources==6.5.2
    # via matplotlib
iniconfig==2.1.0
    # via pytest
jinja2==3.1.6
    # via sphinx
joblib==1.5.1
    # via scikit-learn
kiwisolver==1.4.7
    # via matplotlib
loguru==0.7.3
    # via
    #   pyprophet
    #   pyprophet (setup.py)
lxml==6.0.2
    # via
    #   pyprophet
    #   pyprophet (setup.py)
markupsafe==3.0.2
    # via jinja2
matplotlib==3.9.4
    # via
    #   pyopenms
    #   pyprophet
    #   pyprophet (setup.py)
mypy==1.18.2
    # via pyprophet (setup.py)
mypy-extensions==1.1.0
    # via
    #   black
    #   mypy
numpy==2.0.2
    # via
    #   contourpy
    #   matplotlib
    #   pandas
    #   pyopenms
    #   pyprophet
    #   pyprophet (setup.py)
    #   scikit-learn
    #   scipy
    #   xgboost-cpu
packaging==25.0
    # via
    #   black
    #   matplotlib
    #   pyprophet
    #   pyprophet (setup.py)
    #   pytest
    #   sphinx
pandas==2.2.3
    # via
    #   pyopenms
    #   pyprophet
    #   pyprophet (setup.py)
pathspec==0.12.1
    # via
    #   black
    #   mypy
pillow==11.3.0
    # via matplotlib
platformdirs==4.4.0
    # via black
pluggy==1.6.0
    # via pytest
polars==1.30.0
    # via
    #   pyprophet
    #   pyprophet (setup.py)
psutil==7.0.0
    # via
    #   pyprophet
    #   pyprophet (setup.py)
pyarrow==20.0.0
    # via
    #   pyprophet
    #   pyprophet (setup.py)
pydata-sphinx-theme==0.16.1
    # via
    #   pyprophet
    #   pyprophet (setup.py)
pygments==2.19.1
    # via
    #   accessible-pygments
    #   pydata-sphinx-theme
    #   pytest
    #   sphinx
pyopenms==3.4.0
    # via
    #   pyprophet
    #   pyprophet (setup.py)
pyparsing==3.2.3
    # via matplotlib
pypdf==6.4.0
    # via
    #   pyprophet
    #   pyprophet (setup.py)
pytest==8.4.0
    # via
    #   pyprophet
    #   pyprophet (setup.py)
    #   pytest-regtest
    #   pytest-xdist
pytest-regtest==2.3.3
    # via
    #   pyprophet
    #   pyprophet (setup.py)
pytest-xdist==3.7.0
    # via
    #   pyprophet
    #   pyprophet (setup.py)
python-dateutil==2.9.0.post0
    # via
    #   matplotlib
    #   pandas
pytokens==0.2.0
    # via black
pytz==2025.2
    # via pandas
requests==2.32.4
    # via sphinx
ruff==0.14.1
    # via pyprophet (setup.py)
scikit-learn==1.6.1
    # via
    #   pyprophet
    #   pyprophet (setup.py)
scipy==1.13.1
    # via
    #   pyprophet
    #   pyprophet (setup.py)
    #   scikit-learn
    #   xgboost-cpu
six==1.17.0
    # via python-dateutil
snowballstemmer==3.0.1
    # via sphinx
soupsieve==2.7
    # via beautifulsoup4
sphinx==7.4.7
    # via
    #   pydata-sphinx-theme
    #   pyprophet
    #   pyprophet (setup.py)
    #   sphinx-click
    #   sphinx-copybutton
    #   sphinx-rtd-theme
    #   sphinxcontrib-jquery
sphinx-click==6.0.0
    # via
    #   pyprophet
    #   pyprophet (setup.py)
sphinx-copybutton==0.5.2
    # via
    #   pyprophet
    #   pyprophet (setup.py)
sphinx-rtd-theme==3.0.2
    # via
    #   pyprophet
    #   pyprophet (setup.py)
sphinxcontrib-applehelp==2.0.0
    # via sphinx
sphinxcontrib-devhelp==2.0.0
    # via sphinx
sphinxcontrib-htmlhelp==2.1.0
    # via sphinx
sphinxcontrib-jquery==4.1
    # via sphinx-rtd-theme
sphinxcontrib-jsmath==1.0.1
    # via sphinx
sphinxcontrib-qthelp==2.0.0
    # via sphinx
sphinxcontrib-serializinghtml==2.0.0
    # via sphinx
threadpoolctl==3.6.0
    # via scikit-learn
tomli==2.2.1
    # via
    #   black
    #   mypy
    #   pytest
    #   sphinx
typing-extensions==4.14.0
    # via
    #   beautifulsoup4
    #   black
    #   exceptiongroup
    #   mypy
    #   pydata-sphinx-theme
    #   pypdf
tzdata==2025.2
    # via pandas
urllib3==2.6.0
    # via requests
xgboost-cpu==2.1.4
    # via
    #   pyprophet
    #   pyprophet (setup.py)
zipp==3.22.0
    # via
    #   importlib-metadata
    #   importlib-resources