Merge pull request #2495 from blnicho/finalize-release-6.4.2

Finalize release 6.4.2

Author: blnicho

.coin-or/projDesc.xml

@@ -227,8 +227,8 @@ Carl D. Laird, Chair, Pyomo Management Committee, claird at andrew dot cmu dot e
 			     Use explicit overrides to disable use of automated
 			     version reporting.
 			-->
-			<stableVersionNumber>6.4.1</stableVersionNumber>
-			<releaseNumber>6.4.1</releaseNumber>
+			<stableVersionNumber>6.4.2</stableVersionNumber>
+			<releaseNumber>6.4.2</releaseNumber>
 
 		</developmentStatus>
 

CHANGELOG.txt

@@ -2,6 +2,65 @@
 Pyomo CHANGELOG
 ===============
 
+-------------------------------------------------------------------------------
+Pyomo 6.4.2    17 Aug 2022
+-------------------------------------------------------------------------------
+
+- General
+  - Resolve dill incompatibility with attempt_import (#2419)
+  - Speed up book tests and improve import/logging infrastructure (#2449)
+  - Make typing overloads available at runtime (#2471)
+  - Update list of known TPLs to reflect Python 3.10 (#2478)
+  - Add NL writer version 2 but don't activate by default (#2473)
+  - Add deprecation.relocated_module utility (#2492)
+- Core
+  - Support cython functions through Initializer (#2421)
+  - Ensure UnindexedComponent_set is correctly pickled/restored (#2416)
+  - Update as_numeric() to raise an exception on non-is_numeric_type() Pyomo
+    objects (#2444)
+  - replace_expressions: support replacing variables with constants (#2410)
+  - Update component_data_objects and component_data_iterindex to not
+    return duplicate data (#2456)
+  - Fix exception handling logic bug in quicksum (#2458)
+  - Reduce recursion in model clone/deepcopy (#2487)
+  - Resolve exception cloning empty LinearExpression objects (#2489)
+  - Resolve errors from inplace operators on Expression objects (#2493)
+- Documentation
+  - Fix typos and incorrect link (#2420, #2482)
+  - Fix Sphinx warnings in documentation builds (#2434)
+- Solver Interfaces
+  - Add support for SCIP 8.0 (#2409)
+  - Add explicit space to GAMS put statements to support GAMS 39+ (#2450)
+  - Catch exceptions in BARON interface when parsing objective bounds (#2467)
+- Testing
+  - Skip SCIP 8.0 tests on PyPy (#2424)
+  - Force conda to use conda-forge channel in GHA (#2430)
+  - Fix GHA win/3.10 Python version inconsistency (#2433)
+  - Enable Pyomo.DAE Simulator tests on PyPy (#2443)
+  - Abort the Jenkins build if virtualenv creation fails (#2451)
+  - Remove scipy from GHA PyPy builds (#2474)
+  - Move performance testing driver scripts to scripts/performance (#2476)
+  - Improve common.timing test robustness (#2490)
+- Contributed Packages
+  - APPSI: Improve error message in nl writer when all variables fixed (#2407)
+  - APPSI: Fix bug in Gurobi interface when modifying the objective (#2454)
+  - APPSI: Solve blocks that use variables that are not on the block (#2453)
+  - APPSI: Method to release Gurobi license from persistent interface (#2480)
+  - community_detection: Trap exceptions from networkx (#2415)
+  - FBBT: Add tolerances to tests (#2445)
+  - GDPopt: Refactor to improve extensibility and maintainability (#2406)
+  - incidence_analysis: Add method for weakly connected components (#2418)
+  - MindtPy: Fix bug in copying variable values between models (#2432)
+  - MindtPy: Add support for appsi_cplex and appsi_gurobi (#2373)
+  - Parmest: Add utils submodule and support to convert Params to Vars (#2352)
+  - Parmest: Fix use of relocated_module_attribute (#2472)
+  - PyROS: Fixes to ellipsoidal sets (#2425)
+  - PyROS: Account for variable domains (#2426)
+  - PyROS: Fix objective validation (#2371)
+  - PyROS: Avoid master feasibility problem unit consistency checks (#2459)
+  - PyROS: Fix discrete uncertainty set separation (#2469)
+  - PyROS: Update exception handling parsing BARON lower/upper bounds (#2486)
+
 -------------------------------------------------------------------------------
 Pyomo 6.4.1    13 May 2022
 -------------------------------------------------------------------------------
@@ -31,7 +90,7 @@ Pyomo 6.4.1    13 May 2022
 - Contributed Packages
   - APPSI: Minor improvements and generalizations (#2383, #2386, #2389,
     #2391, #2388, #2392)
-  - incidence_analysis: Add option to ignore inequality constraints in 
+  - incidence_analysis: Add option to ignore inequality constraints in
     IncidenceGraphInterface (#2350)
   - MC++: Update interface tests (#2400)
   - MindtPy: Add quadratic_strategy option to pass quadratic constraints
@@ -157,15 +216,15 @@ Pyomo 6.2    17 Nov 2021
   - Remove deprecated calls to warnings.warning (#2106)
   - Add Bool and Integer domain validators (#2110)
   - Overhaul of Pyomo TempfileManager (#2109)
-  - Allow passing tuples and expressions to 
+  - Allow passing tuples and expressions to
     calculate_variable_from_constraint() (#2133)
   - Add external functions to block in create_subsystem_block (#2142)
   - Track changes in pint 0.18 and Xpress 8.13.0 (#2168)
   - Remove code deprecated in Pyomo version 5.6 or older (#1992)
   - Add Linux aarch64 wheel build support (#2076)
   - Update wheel creation GitHub Actions version (#2192)
   - Remove optional_packages from pyomo.environ (#2195)
-  - Ignore bounds/domain when updating variable value in 
+  - Ignore bounds/domain when updating variable value in
     calculate_variable_from_constraint() (#2177)
 - Core
   - Fix Expression.getitem when initialized with Skip (#2136)
@@ -174,7 +233,7 @@ Pyomo 6.2    17 Nov 2021
   - Fix bug in differentiate module related to reused subexpressions (#2148)
   - Rework expression replacement and LinearExpression object (#2143)
   - Add support for custom pint registries (#2153)
-  - Add support for solving blocks and targets in logical_to_linear 
+  - Add support for solving blocks and targets in logical_to_linear
     transformation (#2147)
   - Add support for finding components with a ComponentUID (#2178)
   - Fix bugs with open NumericRanges (#2170, #2179)
@@ -206,16 +265,16 @@ Pyomo 6.2    17 Nov 2021
 - Contributed Packages
   - APPSI: Add support for external functions in NL writer (#2111)
   - APPSI: Improved handling of immutable parameters (#2112)
-  - PyNumero: Pass AMPLFUNC directly to pynumero_ASL and not through 
+  - PyNumero: Pass AMPLFUNC directly to pynumero_ASL and not through
     environment (#2114, #2129)
   - PyNumero: ExternalPyomoModel performance improvements (#2155)
   - PyNumero: Remove exception when variable bounds are equal (#2121)
   - Parmest: Add support for indexed variables (#2108)
-  - incidence_analysis: Simplify extraction of diagonal blocks from a block 
+  - incidence_analysis: Simplify extraction of diagonal blocks from a block
     triangularization (#2128)
   - GDPopt: Make line endings PEP8 compliant (#2173)
   - MindtPy: Add support for MIP solver solution pools (#2164)
-  - MindtPy: Skip specific tests due to failure with Gurobi 9.5.0 on 
+  - MindtPy: Skip specific tests due to failure with Gurobi 9.5.0 on
     Windows (#2183)
   - MindtPy: Fix feasibility pump and fixed variable detection (#2185, #2187)
   - PyROS: Add uncertain variable bounds detection (#2159)

README.md

@@ -4,8 +4,6 @@
 [![Documentation Status](https://readthedocs.org/projects/pyomo/badge/?version=latest)](http://pyomo.readthedocs.org/en/latest/)
 [![GitHub contributors](https://img.shields.io/github/contributors/pyomo/pyomo.svg)](https://github.com/pyomo/pyomo/graphs/contributors)
 [![Merged PRs](https://img.shields.io/github/issues-pr-closed-raw/pyomo/pyomo.svg?label=merged+PRs)](https://github.com/pyomo/pyomo/pulls?q=is:pr+is:merged)
-[![Issue stats](http://isitmaintained.com/badge/resolution/pyomo/pyomo.svg)](http://isitmaintained.com/project/pyomo/pyomo)
-[![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)
 
 [![a COIN-OR project](https://www.coin-or.org/GitHub/coin-or-badge.png)](https://www.coin-or.org)
 

RELEASE.txt

@@ -1,4 +1,4 @@
-We are pleased to announce the release of Pyomo 6.4.1.
+We are pleased to announce the release of Pyomo 6.4.2.
 
 Pyomo is a collection of Python software packages that supports a
 diverse set of optimization capabilities for formulating and analyzing

pyomo/common/timing.py

@@ -235,7 +235,7 @@ class was constructed). Note: timing logged using logger.info
             if args and '%' not in msg:
                 deprecation_warning(
                     "tic(): 'ostream' and 'logger' should be "
-                    "specified as keyword arguments", version='TBD')
+                    "specified as keyword arguments", version='6.4.2')
                 ostream, *args = args
                 if args:
                     logger, *args = args
@@ -275,7 +275,7 @@ class was constructed). Note: timing logged using `level`
         if args and msg is not None and '%' not in msg:
             deprecation_warning(
                 "toc(): 'delta', 'ostream', and 'logger' should be "
-                "specified as keyword arguments", version='TBD')
+                "specified as keyword arguments", version='6.4.2')
             delta, *args = args
             if args:
                 ostream, *args = args

pyomo/contrib/gdpopt/config_options.py

@@ -28,12 +28,12 @@
 
 def _strategy_deprecation(strategy):
     deprecation_warning("The argument 'strategy' has been deprecated "
-                        "in favor of 'algorithm.'", version="TBD")
+                        "in favor of 'algorithm.'", version="6.4.2")
     return In(_supported_algorithms)(strategy)
 
 def _init_strategy_deprecation(strategy):
     deprecation_warning("The argument 'init_strategy' has been deprecated "
-                        "in favor of 'init_algorithm.'", version="TBD")
+                        "in favor of 'init_algorithm.'", version="6.4.2")
     return In(valid_init_strategies)(strategy)
 
 def _get_algorithm_config():

pyomo/contrib/gdpopt/solve_discrete_problem.py

@@ -62,7 +62,7 @@ def solve_MILP_discrete_problem(util_block, solver, config):
         deprecation_warning(
             "The 'call_before_master_solve' argument is deprecated. "
             "Please use the 'call_before_discrete_problem_solve' option "
-            "to specify the callback.", version="TBD")
+            "to specify the callback.", version="6.4.2")
 
     with SuppressInfeasibleWarning():
         mip_args = dict(config.mip_solver_args)
@@ -83,7 +83,7 @@ def solve_MILP_discrete_problem(util_block, solver, config):
         deprecation_warning(
             "The 'call_after_master_solve' argument is deprecated. "
             "Please use the 'call_after_discrete_problem_solve' option to "
-            "specify the callback.", version="TBD")
+            "specify the callback.", version="6.4.2")
 
     terminate_cond = results.solver.termination_condition
     if terminate_cond is tc.infeasibleOrUnbounded:

pyomo/contrib/gdpopt/util.py

@@ -155,7 +155,7 @@ def copy_var_list_values(from_list, to_list, config,
     """
     if ignore_integrality:
         deprecation_warning("The 'ignore_integrality' argument no longer "
-                            "has any functionality.", version="TBD")
+                            "has any functionality.", version="6.4.2")
 
     if len(from_list) != len(to_list):
         raise ValueError('The lengths of from_list and to_list do not match.')

pyomo/contrib/parmest/ipopt_solver_wrapper.py

@@ -9,10 +9,6 @@
 #  This software is distributed under the 3-clause BSD License.
 #  ___________________________________________________________________________
 
-from .utils.ipopt_solver_wrapper import *
-
-from pyomo.common.deprecation import deprecation_warning
-deprecation_warning(
-    'The pyomo.contrib.parmest.ipopt_solver_wrapper module has been moved to '
-    'pyomo.contrib.parmest.utils.ipopt_solver_wrapper. Please update your import',
-    version='TBD')
+from pyomo.common.deprecation import relocated_module
+relocated_module('pyomo.contrib.parmest.utils.ipopt_solver_wrapper',
+                 version='6.4.2')

pyomo/version/info.py

@@ -27,8 +27,8 @@
 major=6
 minor=4
 micro=2
-releaselevel='invalid'
-#releaselevel='final'
+#releaselevel='invalid'
+releaselevel='final'
 serial=0
 
 if releaselevel == 'final':

setup.py

@@ -209,6 +209,7 @@ def _print_deps(self, deplist):
     ],
     extras_require = {
         'tests': [
+            #'codecov', # useful for testing infrastructures, but not required
             'coverage',
             'pytest',
             'pytest-parallel',