Merge pull request #3256 from blnicho/finalize-release-6.7.2

Finalize 6.7.2 release

Author: mrmundt

.coin-or/projDesc.xml

@@ -227,8 +227,8 @@ Carl D. Laird, Chair, Pyomo Management Committee, claird at andrew dot cmu dot e
 			     Use explicit overrides to disable use of automated
 			     version reporting.
 			-->
-			<stableVersionNumber>6.7.1</stableVersionNumber>
-			<releaseNumber>6.7.1</releaseNumber>
+			<stableVersionNumber>6.7.2</stableVersionNumber>
+			<releaseNumber>6.7.2</releaseNumber>
 
 		</developmentStatus>
 

CHANGELOG.md

@@ -2,6 +2,81 @@ Pyomo CHANGELOG
 ===============
 
 
+-------------------------------------------------------------------------------
+Pyomo 6.7.2   (9 May 2024)
+-------------------------------------------------------------------------------
+
+- General
+  - Support config domains with either method or attribute domain_name (#3159)
+  - Automate TPL callback registrations (#3167)
+  - Fix type registrations for ExternalFunction arguments (#3168)
+  - Only modify module path and spec for deferred import modules (#3176)
+  - Add "mixed" standard form representation (#3201)
+  - Support "default" dispatchers in `ExitNodeDispatcher` (#3194)
+  - Redefine objective sense as a proper `IntEnum` (#3224)
+  - Fix division-by-0 bug in linear walker (#3246)
+- Core
+  - Allow `Var` objects in `LinearExpression.args` (#3189)
+  - Add type hints to components (#3173)
+  - Simplify expressions generated by `TemplateSumExpression` (#3196)
+  - Make component data public classes (#3221, #3253)
+  - Exploit repeated named expressions in `identify_variables` (#3190)
+- Documentation
+  - NFC: Add link to the HOMOWP companion notebooks (#3195)
+  - Update installation documentation to include Cython instructions (#3208)
+  - Add links to the Pyomo Book Springer page (#3211)
+- Solver Interfaces
+  - Fix division by zero error in linear presolve (#3161)
+  - Subprocess timeout update (#3183)
+  - Solver Refactor - Bug fixes for various components (#3181, #3214, #3228)
+  - NLv2: handle presolved independent linear subsystems (#3193)
+  - Update `LegacySolverWrapper` compatibility with the `pyomo` script (#3202)
+  - Fix mosek_direct to use putqconk instead of putqcon (#3199)
+  - Check _skip_trivial_constraints before the constraint body (#3226)
+  - Fix AMPL solver duplicate funcadd (#3206)
+  - Disable the use of universal newlines in the ipopt_v2 NL file (#3231)
+  - NLv2: fix reporting numbers of nonlinear discrete variables (#3238)
+  - Fix: Get SCIP solving time considering float number with some text (#3234)
+  - Solver Refactor - Add `gurobi_direct` implementation (#3225)
+- Testing
+  - Update TPL package list due to `contrib.solver` (#3164)
+  - Set maxDiff=None on the base TestCase class (#3171)
+  - Testing infrastructure updates (#3175)
+  - Typos update for March 2024 (#3219)
+  - Add openmpi to testing environment to resolve issue in mpi4py (#3236, #3239)
+  - Skip black 24.4.1 due to a bug in the parser (#3247)
+  - Skip tests on draft and WIP pull requests (#3223)
+  - Update GHA to grab gurobipy from PyPI (#3254)
+- GDP
+  - Use private_data for all original / transformed component mappings (#3166)
+  - Fix a bug in gdp.bigm transformation for nested GDPs (#3213)
+- Contributed Packages
+  - APPSI: cmodel: handle non-mutable params in var / constraint bounds (#3182)
+  - APPSI: Allow APPSI FBBT to handle nested named Expressions (#3185)
+  - APPSI: Add MAiNGO solver interface (#3165)
+  - CP: Add SequenceVar and other logical expressions for scheduling (#3227)
+  - DoE: Bug fixes (#3245)
+  - iis: Add minimal intractable system infeasibility diagnostics (#3172)
+  - incidence_analysis: Improve `solve_strongly_connected_components` 
+    performance for models with named expressions (#3186)
+  - incidence_analysis: Add function to plot incidence graph in
+    Dulmage-Mendelsohn order (#3207)
+  - incidence_analysis: Require variables and constraints to be specified
+    separately in `IncidenceGraphInterface.remove_nodes` (#3212)
+  - latex_printer: bugfix for set operations / multidimensional sets (#3177)
+  - MindtPy: Add HiGHS support (#2971)
+  - MindtPy: Add call_before_subproblem_solve callback (#3251)
+  - Parmest: New UI using experiment lists (#3160)
+  - piecewise: Add piecewise linear transformations (#3036)
+  - preprocessing: bugfix: intersect domains in variable aggregator (#3241)
+  - PyNumero: Allow CyIpopt to solve problems without objectives (#3163)
+  - PyNumero: Work around bug in CyIpopt 1.4.0 (#3222)
+  - PyNumero: Include "inventory" in readme (#3248)
+  - PyROS: Simplify custom domain validators (#3169)
+  - PyROS: Fix iteration logging for edge case involving discrete sets  (#3170)
+  - PyROS: Update solver timing system (#3198)
+  - simplification: expression simplification using GiNaC or SymPy (#3088)
+
 -------------------------------------------------------------------------------
 Pyomo 6.7.1   (21 Feb 2024)
 -------------------------------------------------------------------------------

RELEASE.md

@@ -1,4 +1,4 @@
-We are pleased to announce the release of Pyomo 6.7.1.
+We are pleased to announce the release of Pyomo 6.7.2.
 
 Pyomo is a collection of Python software packages that supports a
 diverse set of optimization capabilities for formulating and analyzing
@@ -10,9 +10,14 @@ The following are highlights of the 6.7 release series:
  - Removed support for Python 3.7
  - New writer for converting linear models to matrix form
  - Improved handling of nested GDPs
+ - Redesigned user API for parameter estimation
  - New packages:
-    - latex_printer (print Pyomo models to a LaTeX compatible format)
+    - iis: new capability for identifying minimal intractable systems
+    - latex_printer: print Pyomo models to a LaTeX compatible format
     - contrib.solver: preview of redesigned solver interfaces
+    - simplification: simplify Pyomo expressions
+ - New solver interfaces
+    - MAiNGO: Mixed-integer nonlinear global optimization
  - ...and of course numerous minor bug fixes and performance enhancements
 
 A full list of updates and changes is available in the

pyomo/common/dependencies.py

@@ -611,7 +611,7 @@ def attempt_import(
         want to import/return the first one that is available.
 
     defer_check: bool, optional
-        DEPRECATED: renamed to ``defer_import`` (deprecated in version 6.7.2.dev0)
+        DEPRECATED: renamed to ``defer_import`` (deprecated in version 6.7.2)
 
     defer_import: bool, optional
         If True, then the attempted import is deferred until the first
@@ -674,7 +674,7 @@ def attempt_import(
     if defer_check is not None:
         deprecation_warning(
             'defer_check=%s is deprecated.  Please use defer_import' % (defer_check,),
-            version='6.7.2.dev0',
+            version='6.7.2',
         )
         assert defer_import is None
         defer_import = defer_check
@@ -787,7 +787,7 @@ def _perform_import(
 @deprecated(
     "``declare_deferred_modules_as_importable()`` is deprecated.  "
     "Use the :py:class:`declare_modules_as_importable` context manager.",
-    version='6.7.2.dev0',
+    version='6.7.2',
 )
 def declare_deferred_modules_as_importable(globals_dict):
     """Make all :py:class:`DeferredImportModules` in ``globals_dict`` importable

pyomo/common/numeric_types.py

@@ -64,7 +64,7 @@
 relocated_module_attribute(
     'pyomo_constant_types',
     'pyomo.common.numeric_types._pyomo_constant_types',
-    version='6.7.2.dev0',
+    version='6.7.2',
     msg="The pyomo_constant_types set will be removed in the future: the set "
     "contained only NumericConstant and _PythonCallbackFunctionID, and provided "
     "no meaningful value to clients or walkers.  Users should likely handle "

pyomo/contrib/incidence_analysis/interface.py

@@ -891,9 +891,9 @@ def remove_nodes(self, variables=None, constraints=None):
 
         .. note::
 
-           **Deprecation in Pyomo v6.7.2.dev0**
+           **Deprecation in Pyomo v6.7.2**
 
-           The pre-6.7.2.dev0 implementation of ``remove_nodes`` allowed variables and
+           The pre-6.7.2 implementation of ``remove_nodes`` allowed variables and
            constraints to remove to be specified in a single list. This made
            error checking difficult, and indeed, if invalid components were
            provided, we carried on silently instead of throwing an error or
@@ -923,7 +923,7 @@ def remove_nodes(self, variables=None, constraints=None):
         if any(var in self._con_index_map for var in variables) or any(
             con in self._var_index_map for con in constraints
         ):
-            deprecation_warning(depr_msg, version="6.7.2.dev0")
+            deprecation_warning(depr_msg, version="6.7.2")
         # If we received variables/constraints in the same list, sort them.
         # Any unrecognized objects will be caught by _validate_input.
         for var in variables:

pyomo/contrib/parmest/parmest.py

@@ -68,8 +68,6 @@
 from pyomo.common.deprecation import deprecated
 from pyomo.common.deprecation import deprecation_warning
 
-DEPRECATION_VERSION = '6.7.2.dev0'
-
 parmest_available = numpy_available & pandas_available & scipy_available
 
 inverse_reduced_hessian, inverse_reduced_hessian_available = attempt_import(
@@ -338,7 +336,7 @@ def _deprecated_init(
             "You're using the deprecated parmest interface (model_function, "
             "data, theta_names). This interface will be removed in a future release, "
             "please update to the new parmest interface using experiment lists.",
-            version=DEPRECATION_VERSION,
+            version='6.7.2',
         )
         self.pest_deprecated = _DeprecatedEstimator(
             model_function,
@@ -1386,7 +1384,7 @@ def confidence_region_test(
 ################################
 
 
-@deprecated(version=DEPRECATION_VERSION)
+@deprecated(version='6.7.2')
 def group_data(data, groupby_column_name, use_mean=None):
     """
     Group data by scenario

pyomo/core/base/__init__.py

@@ -163,13 +163,13 @@
 )
 # Historically, only a subset of "private" component data classes were imported here
 relocated_module_attribute(
-    f'_GeneralVarData', f'pyomo.core.base.VarData', version='6.7.2.dev0'
+    f'_GeneralVarData', f'pyomo.core.base.VarData', version='6.7.2'
 )
 relocated_module_attribute(
-    f'_GeneralBooleanVarData', f'pyomo.core.base.BooleanVarData', version='6.7.2.dev0'
+    f'_GeneralBooleanVarData', f'pyomo.core.base.BooleanVarData', version='6.7.2'
 )
 relocated_module_attribute(
-    f'_ExpressionData', f'pyomo.core.base.NamedExpressionData', version='6.7.2.dev0'
+    f'_ExpressionData', f'pyomo.core.base.NamedExpressionData', version='6.7.2'
 )
 for _cdata in (
     'ConstraintData',
@@ -179,7 +179,7 @@
     'ObjectiveData',
 ):
     relocated_module_attribute(
-        f'_{_cdata}', f'pyomo.core.base.{_cdata}', version='6.7.2.dev0'
+        f'_{_cdata}', f'pyomo.core.base.{_cdata}', version='6.7.2'
     )
 del _cdata
 del relocated_module_attribute

pyomo/core/base/block.py

@@ -1983,7 +1983,7 @@ def private_data(self, scope=None):
 
 class _BlockData(metaclass=RenamedClass):
     __renamed__new_class__ = BlockData
-    __renamed__version__ = '6.7.2.dev0'
+    __renamed__version__ = '6.7.2'
 
 
 @ModelComponentFactory.register(

pyomo/core/base/boolean_var.py

@@ -252,12 +252,12 @@ def free(self):
 
 class _BooleanVarData(metaclass=RenamedClass):
     __renamed__new_class__ = BooleanVarData
-    __renamed__version__ = '6.7.2.dev0'
+    __renamed__version__ = '6.7.2'
 
 
 class _GeneralBooleanVarData(metaclass=RenamedClass):
     __renamed__new_class__ = BooleanVarData
-    __renamed__version__ = '6.7.2.dev0'
+    __renamed__version__ = '6.7.2'
 
 
 @ModelComponentFactory.register("Logical decision variables.")

pyomo/core/base/component.py

@@ -477,7 +477,7 @@ def _pprint_base_impl(
 
 class _ComponentBase(metaclass=RenamedClass):
     __renamed__new_class__ = ComponentBase
-    __renamed__version__ = '6.7.2.dev0'
+    __renamed__version__ = '6.7.2'
 
 
 class Component(ComponentBase):
@@ -663,7 +663,7 @@ def getname(self, fully_qualified=False, name_buffer=None, relative_to=None):
                 "use of this argument poses risks if the buffer contains "
                 "names relative to different Blocks in the model hierarchy or "
                 "a mixture of local and fully_qualified names.",
-                version='TODO',
+                version='6.4.1',
             )
             name_buffer[id(self)] = ans
         return ans
@@ -922,7 +922,7 @@ def getname(self, fully_qualified=False, name_buffer=None, relative_to=None):
                 "use of this argument poses risks if the buffer contains "
                 "names relative to different Blocks in the model hierarchy or "
                 "a mixture of local and fully_qualified names.",
-                version='TODO',
+                version='6.4.1',
             )
             if id(self) in name_buffer:
                 # Return the name if it is in the buffer

pyomo/core/base/connector.py

@@ -107,7 +107,7 @@ def _iter_vars(self):
 
 class _ConnectorData(metaclass=RenamedClass):
     __renamed__new_class__ = ConnectorData
-    __renamed__version__ = '6.7.2.dev0'
+    __renamed__version__ = '6.7.2'
 
 
 @ModelComponentFactory.register(

pyomo/core/base/constraint.py

@@ -577,12 +577,12 @@ def slack(self):
 
 class _ConstraintData(metaclass=RenamedClass):
     __renamed__new_class__ = ConstraintData
-    __renamed__version__ = '6.7.2.dev0'
+    __renamed__version__ = '6.7.2'
 
 
 class _GeneralConstraintData(metaclass=RenamedClass):
     __renamed__new_class__ = ConstraintData
-    __renamed__version__ = '6.7.2.dev0'
+    __renamed__version__ = '6.7.2'
 
 
 @ModelComponentFactory.register("General constraint expressions.")

pyomo/core/base/expression.py

@@ -198,12 +198,12 @@ def __ipow__(self, other):
 
 class _ExpressionData(metaclass=RenamedClass):
     __renamed__new_class__ = NamedExpressionData
-    __renamed__version__ = '6.7.2.dev0'
+    __renamed__version__ = '6.7.2'
 
 
 class _GeneralExpressionDataImpl(metaclass=RenamedClass):
     __renamed__new_class__ = NamedExpressionData
-    __renamed__version__ = '6.7.2.dev0'
+    __renamed__version__ = '6.7.2'
 
 
 class ExpressionData(NamedExpressionData, ComponentData):
@@ -231,7 +231,7 @@ def __init__(self, expr=None, component=None):
 
 class _GeneralExpressionData(metaclass=RenamedClass):
     __renamed__new_class__ = ExpressionData
-    __renamed__version__ = '6.7.2.dev0'
+    __renamed__version__ = '6.7.2'
 
 
 @ModelComponentFactory.register(

pyomo/core/base/logical_constraint.py

@@ -124,12 +124,12 @@ def get_value(self):
 
 class _LogicalConstraintData(metaclass=RenamedClass):
     __renamed__new_class__ = LogicalConstraintData
-    __renamed__version__ = '6.7.2.dev0'
+    __renamed__version__ = '6.7.2'
 
 
 class _GeneralLogicalConstraintData(metaclass=RenamedClass):
     __renamed__new_class__ = LogicalConstraintData
-    __renamed__version__ = '6.7.2.dev0'
+    __renamed__version__ = '6.7.2'
 
 
 @ModelComponentFactory.register("General logical constraints.")

pyomo/core/base/objective.py

@@ -145,12 +145,12 @@ def set_sense(self, sense):
 
 class _ObjectiveData(metaclass=RenamedClass):
     __renamed__new_class__ = ObjectiveData
-    __renamed__version__ = '6.7.2.dev0'
+    __renamed__version__ = '6.7.2'
 
 
 class _GeneralObjectiveData(metaclass=RenamedClass):
     __renamed__new_class__ = ObjectiveData
-    __renamed__version__ = '6.7.2.dev0'
+    __renamed__version__ = '6.7.2'
 
 
 @ModelComponentFactory.register("Expressions that are minimized or maximized.")

pyomo/core/base/param.py

@@ -254,7 +254,7 @@ def _compute_polynomial_degree(self, result):
 
 class _ParamData(metaclass=RenamedClass):
     __renamed__new_class__ = ParamData
-    __renamed__version__ = '6.7.2.dev0'
+    __renamed__version__ = '6.7.2'
 
 
 @ModelComponentFactory.register(

pyomo/core/base/piecewise.py

@@ -274,7 +274,7 @@ def __call__(self, x):
 
 class _PiecewiseData(metaclass=RenamedClass):
     __renamed__new_class__ = PiecewiseData
-    __renamed__version__ = '6.7.2.dev0'
+    __renamed__version__ = '6.7.2'
 
 
 class _SimpleSinglePiecewise(object):