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Merge pull request #541 from QIICR/dcmqi_labelmap_background #268

Merge pull request #541 from QIICR/dcmqi_labelmap_background

Merge pull request #541 from QIICR/dcmqi_labelmap_background #268

Workflow file for this run

name: C/C++ CI Linux
on:
push:
branches: [ "master" ]
pull_request:
branches: [ "master" ]
release:
types: [ published ]
workflow_dispatch:
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
permissions:
deployments: write
packages: write
jobs:
build-linux:
runs-on: ubuntu-latest
timeout-minutes: 40
permissions:
contents: write
actions: write
packages: write
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- uses: actions/setup-python@v5
with:
python-version: '3.10.11'
- name: "Install jsondiff"
run: pip install jsondiff
- name: "Install cmake"
run: |
sudo apt-get update
sudo apt-get install rsync
sudo apt-get install cmake
# Set up Docker Buildx for better caching support
- name: Set up Docker Buildx
uses: docker/setup-buildx-action@v3
# Cache the build directory containing all external dependencies
- name: Cache build directory
id: cache-build-dir
uses: actions/cache@v4
env:
cache-name: cache-build-artifacts
with:
path: |
build/
/tmp/dockcross
# Cache key includes hash of CMakeExternals files and Makefile
# to invalidate when dependencies or build process changes
key: ${{ runner.os }}-${{ env.cache-name }}-${{ hashFiles('CMakeExternals/DCMTK.cmake', 'CMakeExternals/ITK.cmake', 'CMakeExternals/zlib.cmake', 'docker/Makefile') }}
restore-keys: |
${{ runner.os }}-${{ env.cache-name }}-
# Report cache status
- name: Report cache status
run: |
if [ "${{ steps.cache-build-dir.outputs.cache-hit }}" == "true" ]; then
echo "✓ Cache hit! Using cached build artifacts"
echo "Cache key: ${{ steps.cache-build-dir.outputs.cache-primary-key }}"
if [ -d build ]; then
echo "Build directory size:"
du -sh build/ 2>/dev/null || true
echo "Build directory contents:"
ls -lh build/ 2>/dev/null || true
fi
if [ -f /tmp/dockcross ]; then
echo "✓ Dockcross script cached"
fi
else
echo "✗ Cache miss. Will build all dependencies from source"
fi
- name: "Build dcmqi"
run: |
cd docker && make dcmqi
- name: "Test dcmqi"
run: |
cd docker && make dcmqi.test
- name: "Publish docker image"
# Only run if the event is not a pull request and the repository owner is QIICR.
# The latter is to prevent forks from publishing packages even if the owner's token
# would have sufficient privileges.
if: ${{ (github.event_name != 'pull_request') && (github.repository_owner == 'QIICR')}}
run: |
docker login -u ${{ secrets.DOCKER_USER }} -p ${{ secrets.DOCKER_PASS }} && \
docker push qiicr/dcmqi:`git describe --tags --exact-match 2> /dev/null || echo "latest"` \
|| echo "skipping docker push"
- name: "Upload package as artifact"
id: upload-artifact
uses: actions/upload-artifact@v4
continue-on-error: true
with:
name: dcmqi-linux-package
path: build/dcmqi-build/dcmqi-*-linux*.tar.gz
- name: "Upload package as artifact (retry)"
if: steps.upload-artifact.outcome == 'failure'
uses: actions/upload-artifact@v4
with:
name: dcmqi-linux-package
path: build/dcmqi-build/dcmqi-*-linux*.tar.gz
- name: "Publish linux package"
# Only run if the event is not a pull request and the repository owner is QIICR.
# The latter is to prevent forks from publishing packages even if the owner's token
# would have sufficient privileges.
if: ${{ (github.event_name != 'pull_request') && (github.repository_owner == 'QIICR')}}
env:
GH_TOKEN: ${{ secrets.GA_TOKEN }}
run: |
TAG=$(git describe --tags --exact-match 2>/dev/null || echo "")
if [ -n "$TAG" ]; then
gh release upload "$TAG" \
build/dcmqi-build/dcmqi-*-linux.tar.gz \
--clobber
else
gh release view latest --json assets --jq '.assets[].name' 2>/dev/null \
| grep "dcmqi-.*-linux-" \
| xargs -I{} gh release delete-asset latest "{}" --yes || true
gh release upload latest \
build/dcmqi-build/dcmqi-*-linux*.tar.gz \
--clobber
gh release edit latest --target $(git rev-parse HEAD)
fi