Update preprint references with published references.

Author: dihm

paper/paper.bib

@@ -50,19 +50,22 @@ @article{keaveney_elecsus_2018
   keywords = {Atom-light interaction,Electric field propagation,Faraday effect,Magneto-optics,Polarimetry,Spectroscopy,Stokes parameters,Voigt effect},
 }
 
-@misc{eckel_pylcp_2020,
-  title = {{{PyLCP}}: {{A}} Python Package for Computing Laser Cooling Physics},
+@article{eckel_pylcp_2022,
+  ids = {eckel_pylcp_2020},
+  title = {{{PyLCP}}: {{A Python}} Package for Computing Laser Cooling Physics},
   shorttitle = {{{PyLCP}}},
-  author = {Eckel, S. and Barker, D. S. and Norrgard, E. B. and Scherschligt, J.},
-  year = {2020},
-  month = nov,
-  number = {arXiv:2011.07979},
+  author = {Eckel, Stephen and Barker, Daniel S. and Norrgard, Eric B. and Scherschligt, Julia},
+  year = {2022},
+  month = jan,
+  journal = {Computer Physics Communications},
+  volume = {270},
   eprint = {2011.07979},
-  primaryclass = {physics, physics:quant-ph},
-  publisher = {{arXiv}},
-  doi = {10.48550/arXiv.2011.07979},
-  urldate = {2023-03-22},
-  keywords = {Physics - Atomic Physics,Physics - Computational Physics,Quantum Physics},
+  pages = {108166},
+  issn = {0010-4655},
+  doi = {10.1016/j.cpc.2021.108166},
+  urldate = {2025-07-29},
+  archiveprefix = {arXiv},
+  keywords = {Atomic physics,Laser cooling,Physics - Atomic Physics,Physics - Computational Physics,Python,Quantum Physics}
 }
 
 @misc{rochester_atomicdensitymatrix_2008,
@@ -134,17 +137,20 @@ @misc{cyrk
 
 # science references
 
-@misc{nagib_exact_2025,
+@article{nagib_exact_2025,
   title = {Exact Steady State of Perturbed Open Quantum Systems},
-  author = {Nagib, Omar and Walker, Thad G.},
+  author = {Nagib, Omar and Walker, T. G.},
   year = {2025},
-  month = jan,
-  number = {arXiv:2501.06134},
+  month = jul,
+  journal = {Physical Review Research},
+  volume = {7},
+  number = {3},
   eprint = {2501.06134},
   primaryclass = {quant-ph},
-  publisher = {arXiv},
-  doi = {10.48550/arXiv.2501.06134},
-  urldate = {2025-01-28},
+  pages = {033076},
+  publisher = {American Physical Society},
+  doi = {10.1103/kgsg-3npp},
+  urldate = {2025-07-29},
   archiveprefix = {arXiv},
   keywords = {Quantum Physics}
 }
@@ -348,44 +354,49 @@ @article{backes_performance_2024
   keywords = {Physics - Atomic Physics,Quantum Physics}
 }
 
-@misc{su_two-photon_2024,
+@article{su_two-photon_2025,
   title = {Two-Photon {{Rydberg EIT}} Resonances in Non-Collinear Beam Configurations},
-  author = {Su, Kevin and Behary, Robert and Aubin, Seth and Mikhailov, Eugeniy and Novikova, Irina},
-  year = {2024},
-  month = dec,
-  number = {18035},
-  eprint = {18035},
-  publisher = {opticaopen},
-  doi = {10.1364/opticaopen.27941730.v1},
-  urldate = {2024-12-17},
-  archiveprefix = {opticaopen}
+  author = {Su, Kevin and Behary, Rob and Aubin, Seth and Mikhailov, Eugeniy E. and Novikova, Irina},
+  year = {2025},
+  month = apr,
+  journal = {JOSA B},
+  volume = {42},
+  number = {4},
+  pages = {757--762},
+  publisher = {Optica Publishing Group},
+  issn = {1520-8540},
+  doi = {10.1364/JOSAB.550937},
+  urldate = {2025-07-29},
+  copyright = {{\copyright} 2025 Optica Publishing Group},
+  langid = {english},
+  keywords = {Laser beam propagation,Laser beams,Laser coupling,Numerical simulation,Spatial resolution,Tunable diode lasers}
 }
 
-@misc{richardson_study_2023,
-  title = {Study of {{Angle}} of {{Arrival Estimation}} with {{Linear Arrays}} of {{Simulated Rydberg Atom Receivers}}},
-  author = {Richardson, Daniel and Dee, James and Kayim, Baran and Sawyer, Brian and Wyllie, Robert and Lee, Richard and Westafer, Ryan},
-  year = {2023},
-  month = oct,
-  publisher = {TechRxiv},
-  doi = {10.36227/techrxiv.24236953.v1},
-  urldate = {2023-10-18},
-  archiveprefix = {TechRxiv},
-  langid = {english}
+@article{richardson_study_2025,
+  title = {Study of Angle of Arrival Estimation with Linear Arrays of Simulated {{Rydberg}} Atom Receivers},
+  author = {Richardson, D. and Dee, J. and Kayim, B. N. and Sawyer, B. C. and Wyllie, R. and Lee, R. T. and Westafer, R. S.},
+  year = {2025},
+  month = feb,
+  journal = {APL Quantum},
+  volume = {2},
+  number = {1},
+  pages = {016123},
+  issn = {2835-0103},
+  doi = {10.1063/5.0240787},
+  urldate = {2025-07-29}
 }
 
-@misc{gokhale_deep_2024,
+@inproceedings{gokhale_deep_2024,
   title = {Deep {{Learning}} for {{Low-Latency}}, {{Quantum-Ready RF Sensing}}},
-  author = {Gokhale, Pranav and Carnahan, Caitlin and Clark, William and Chong, Frederic T.},
+  booktitle = {2024 {{IEEE International Conference}} on {{Quantum Computing}} and {{Engineering}} ({{QCE}})},
+  author = {Gokhale, Pranav and Carnahan, Caitlin and Clark, William and Tomesh, Teague and Chong, Frederic T.},
   year = {2024},
-  month = apr,
-  number = {arXiv:2404.17962},
-  eprint = {2404.17962},
-  primaryclass = {quant-ph},
-  publisher = {arXiv},
-  doi = {10.48550/arXiv.2404.17962},
-  urldate = {2024-12-17},
-  archiveprefix = {arXiv},
-  keywords = {Computer Science - Artificial Intelligence,Computer Science - Machine Learning,Computer Science - Performance,Computer Science - Systems and Control,Electrical Engineering and Systems Science - Systems and Control,Quantum Physics}
+  month = sep,
+  volume = {01},
+  pages = {1324--1335},
+  doi = {10.1109/QCE60285.2024.00158},
+  urldate = {2025-07-29},
+  keywords = {Accuracy,Continuous wavelet transforms,deep learning,Deep learning,Hardware,machine learning,Optimization,quantum sensing,Radio frequency,Real-time systems,Recurrent neural networks,RF sensing,RF signals,Rydberg atoms,Sensors}
 }
 
 @misc{santamaria-botello_comparison_2022,

paper/paper.md

@@ -138,7 +138,7 @@ Experimental support for 1D solves only was released in version 2.0.0, with RydI
 # Related Packages and Work
 
 Modeling quantum systems using the semi-classical Lindblad formalism is a common task that has been implemented by many physicists for their bespoke problems.
-Other tools that implement this type of simulation for specific types of problems include: qubits in QuTiP [@johansson_qutip_2013], atomic magnetometers in ElecSus [@keaveney_elecsus_2018], and laser cooling in PyLCP [@eckel_pylcp_2020].
+Other tools that implement this type of simulation for specific types of problems include: qubits in QuTiP [@johansson_qutip_2013], atomic magnetometers in ElecSus [@keaveney_elecsus_2018], and laser cooling in PyLCP [@eckel_pylcp_2022].
 Ultimately, the goal of RydIQule has not been to develop a new modeling technique,
 but rather to make a common, flexible, and most importantly efficient tool that solves a ubiquitous problem.
 
@@ -149,8 +149,8 @@ And since Mathematica is an interpreted language,
 it can lack the speed that compiled libraries like NumPy enable, especially when exploring a large parameter space.
 
 Since RydIQule version 1 has been publicly released,
-it has been used in several publications to model both general Rydberg atom physics [@backes_performance_2024; @su_two-photon_2024; @glick_warm_2025]
-as well as Rydberg sensor development [@santamaria-botello_comparison_2022; @elgee_satellite_2023; @richardson_study_2023; @gokhale_deep_2024; @cui_realizing_2025].
+it has been used in several publications to model both general Rydberg atom physics [@backes_performance_2024; @su_two-photon_2025; @glick_warm_2025]
+as well as Rydberg sensor development [@santamaria-botello_comparison_2022; @elgee_satellite_2023; @richardson_study_2025; @gokhale_deep_2024; @cui_realizing_2025].
 
 # Acknowledgements