cicd:experiment #397
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| name: ci | |
| # Version 1.0.0 | |
| # This workflow is triggered on push events to the repository | |
| # Please find readme.md for the usage of this workflow | |
| on: | |
| push: | |
| branches: | |
| - 'cicd*' | |
| jobs: | |
| PREPARE-job: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| # Job Output Variables: | |
| # - proceed_valid: Whether to proceed with build (true/false, e.g., "true") | |
| # - dockerfile_path: Path to the modified Dockerfile (e.g., "x86/ex1.dockerfile") | |
| # - version: Semver version from Dockerfile (e.g., "0.0.5") | |
| # - devmode: Development mode flag (true/false, e.g., "true") | |
| # - noscan: Skip security scan flag (true/false, e.g., "false") | |
| # - files: List of changed files for debugging (e.g., "x86/ex1.dockerfile") | |
| # - dockerhub_available: Whether Docker Hub credentials are available (true/false) | |
| # - quayio_available: Whether Quay.io credentials are available (true/false) | |
| proceed_valid: ${{ steps.set_proceed_flag.outputs.proceed_valid }} | |
| dockerfile_path: ${{ steps.set_proceed_flag.outputs.dockerfile_path }} | |
| version: ${{ steps.set_proceed_flag.outputs.version }} | |
| devmode: ${{ steps.set_proceed_flag.outputs.devmode }} | |
| noscan: ${{ steps.set_proceed_flag.outputs.noscan }} | |
| files: ${{ steps.changed_files.outputs.files }} | |
| date: ${{ steps.date.outputs.date }} | |
| dockerhub_available: ${{ steps.check_vars_secrets.outputs.dockerhub_available }} | |
| quayio_available: ${{ steps.check_vars_secrets.outputs.quayio_available }} | |
| setonixreg_available: ${{ steps.check_vars_secrets.outputs.setonixreg_available }} | |
| steps: | |
| - name: Initialize runner configuration | |
| id: set_default_runner_label | |
| run: | | |
| echo "runner_label=ubuntu-latest" >> $GITHUB_OUTPUT | |
| - name: Validate environment credentials | |
| id: check_vars_secrets | |
| run: | | |
| missing_vars=() | |
| missing_secrets=() | |
| # check Variables | |
| if [ -z "${{ vars.DOCKERHUB_USERNAME }}" ]; then | |
| missing_vars+=("DOCKERHUB_USERNAME") | |
| fi | |
| if [ -z "${{ vars.QUAYIO_USERNAME }}" ]; then | |
| missing_vars+=("QUAYIO_USERNAME") | |
| fi | |
| if [ -z "${{ vars.SETONIXREG_USERNAME }}" ]; then | |
| missing_vars+=("SETONIXREG_USERNAME") | |
| fi | |
| if [ -z "${{ vars.ACACIA_BUCKETNAME }}" ]; then | |
| missing_vars+=("ACACIA_BUCKETNAME") | |
| fi | |
| # check Secrets | |
| if [ -z "${{ secrets.PAT_TOKEN }}" ]; then | |
| missing_secrets+=("PAT_TOKEN") | |
| fi | |
| if [ -z "${{ secrets.DOCKERHUB_TOKEN }}" ]; then | |
| missing_secrets+=("DOCKERHUB_TOKEN") | |
| fi | |
| if [ -z "${{ secrets.QUAYIO_TOKEN }}" ]; then | |
| missing_secrets+=("QUAYIO_TOKEN") | |
| fi | |
| if [ -z "${{ secrets.SETONIXREG_PASS }}" ]; then | |
| missing_secrets+=("SETONIXREG_PASS") | |
| fi | |
| if [ -z "${{ secrets.ACACIA_ACCESS_KEY_ID }}" ]; then | |
| missing_secrets+=("ACACIA_ACCESS_KEY_ID") | |
| fi | |
| if [ -z "${{ secrets.ACACIA_SECRET_ACCESS_KEY }}" ]; then | |
| missing_secrets+=("ACACIA_SECRET_ACCESS_KEY") | |
| fi | |
| # Log status of variables and secrets | |
| if [ ${#missing_vars[@]} -ne 0 ]; then | |
| echo "Missing Variables: ${missing_vars[@]}" | |
| else | |
| echo "All required variables are set." | |
| fi | |
| if [ ${#missing_secrets[@]} -ne 0 ]; then | |
| echo "Missing Secrets: ${missing_secrets[@]}" | |
| else | |
| echo "All required secrets are set." | |
| fi | |
| # Set output flags for conditional job execution | |
| dockerhub_available=$( [ -n "${{ vars.DOCKERHUB_USERNAME }}" ] && [ -n "${{ secrets.DOCKERHUB_TOKEN }}" ] && echo 'true' || echo 'false' ) | |
| quayio_available=$( [ -n "${{ vars.QUAYIO_USERNAME }}" ] && [ -n "${{ secrets.QUAYIO_TOKEN }}" ] && echo 'true' || echo 'false' ) | |
| setonixreg_available=$( [ -n "${{ vars.SETONIXREG_USERNAME }}" ] && [ -n "${{ secrets.SETONIXREG_PASS }}" ] && echo 'true' || echo 'false' ) | |
| echo "dockerhub_available=$dockerhub_available" >> $GITHUB_OUTPUT | |
| echo "quayio_available=$quayio_available" >> $GITHUB_OUTPUT | |
| echo "setonixreg_available=$setonixreg_available" >> $GITHUB_OUTPUT | |
| # Log registry availability status | |
| echo "" | |
| echo "=== Registry Credentials Check ===" | |
| if [ "$dockerhub_available" = "true" ]; then | |
| echo "[✓] Docker Hub: Credentials available" | |
| else | |
| echo "[✗] Docker Hub: Missing credentials (DOCKERHUB_USERNAME or DOCKERHUB_TOKEN)" | |
| fi | |
| if [ "$quayio_available" = "true" ]; then | |
| echo "[✓] Quay.io: Credentials available" | |
| else | |
| echo "[✗] Quay.io: Missing credentials (QUAYIO_USERNAME or QUAYIO_TOKEN)" | |
| fi | |
| if [ "$setonixreg_available" = "true" ]; then | |
| echo "[✓] Setonix Registry: Credentials available" | |
| else | |
| echo "[✗] Setonix Registry: Missing credentials (SETONIXREG_USERNAME or SETONIXREG_PASS)" | |
| fi | |
| echo "===================================" | |
| - name: Checkout source code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 2 # Ensure enough history is available | |
| - name: Validate git history access | |
| run: | | |
| # Check if we have enough history for git diff | |
| if [ -z "${{ github.event.before }}" ]; then | |
| echo "Error: github.event.before is empty. Cannot perform git diff operation." | |
| echo "This usually means the repository history is not available or fetch-depth is insufficient." | |
| exit 1 | |
| fi | |
| # Verify that we can access the previous commit | |
| if ! git rev-parse --verify ${{ github.event.before }} >/dev/null 2>&1; then | |
| echo "Error: Cannot access previous commit ${{ github.event.before }}" | |
| echo "This indicates that fetch-depth: 2 is not sufficient or the history is not available." | |
| exit 1 | |
| fi | |
| echo "Git history verification passed. Previous commit ${{ github.event.before }} is accessible." | |
| - name: Detect modified Dockerfiles | |
| id: changed_files | |
| run: | | |
| # Get all Dockerfile variants (case-insensitive) | |
| files=$(git diff --name-only ${{ github.event.before }} ${{ github.sha }} | grep -i '\.dockerfile$' || true) | |
| if [ -z "$files" ]; then | |
| echo "No Dockerfile changes detected. This workflow only processes Dockerfile modifications." | |
| echo "files=" >> $GITHUB_OUTPUT | |
| echo "proceed_valid=false" >> $GITHUB_OUTPUT | |
| exit 0 | |
| fi | |
| # Count the number of changed files | |
| file_count=$(echo "$files" | wc -l) | |
| if [ "$file_count" -gt 1 ]; then | |
| echo "Multiple Dockerfiles changed ($file_count files). This workflow only processes single file changes." | |
| echo "files<<EOF" >> $GITHUB_OUTPUT | |
| echo "$files" >> $GITHUB_OUTPUT | |
| echo "EOF" >> $GITHUB_OUTPUT | |
| echo "proceed_valid=false" >> $GITHUB_OUTPUT | |
| exit 0 | |
| fi | |
| echo "Single Dockerfile changed: $files" | |
| echo "files<<EOF" >> $GITHUB_OUTPUT | |
| echo "$files" >> $GITHUB_OUTPUT | |
| echo "EOF" >> $GITHUB_OUTPUT | |
| echo "proceed_valid=true" >> $GITHUB_OUTPUT | |
| - name: Debug changed files output | |
| run: | | |
| echo "Files from output: ${{ steps.changed_files.outputs.files }}" | |
| - name: Validate single file modification | |
| id: validate_changes | |
| if: steps.changed_files.outputs.proceed_valid == 'true' | |
| run: | | |
| changed_files="${{ steps.changed_files.outputs.files }}" | |
| echo "Processing single file: $changed_files" | |
| echo "valid=true" >> $GITHUB_OUTPUT | |
| echo "dockerfile_path=$changed_files" >> $GITHUB_OUTPUT | |
| - name: Extract and validate version | |
| id: validate_version | |
| if: steps.validate_changes.outputs.valid == 'true' | |
| run: | | |
| file="${{ steps.validate_changes.outputs.dockerfile_path }}" | |
| if grep -q -E '^[^#]*LABEL\s+org\.opencontainers\.image\.version\s*=' "$file"; then | |
| version=$(grep -E '^[^#]*LABEL\s+org\.opencontainers\.image\.version\s*=' "$file" | sed -E 's/^[^#]*LABEL\s+org\.opencontainers\.image\.version\s*=\s*"?([^"]*)"?.*/\1/') | |
| if echo "$version" | grep -qE '^[0-9]+\.[0-9]+\.[0-9]+$'; then | |
| echo "Version: $version ✓" | |
| echo "valid=true" >> $GITHUB_OUTPUT | |
| echo "version=$version" >> $GITHUB_OUTPUT | |
| else | |
| echo "Version: $version ✗ (invalid semver)" | |
| echo "valid=false" >> $GITHUB_OUTPUT | |
| echo "message=Invalid version: $version" >> $GITHUB_OUTPUT | |
| fi | |
| else | |
| echo "Version: missing ✗" | |
| echo "valid=false" >> $GITHUB_OUTPUT | |
| echo "message=Missing version label" >> $GITHUB_OUTPUT | |
| fi | |
| - name: Parse build configuration flags | |
| id: parse_settings | |
| if: steps.validate_changes.outputs.valid == 'true' | |
| run: | | |
| file="${{ steps.validate_changes.outputs.dockerfile_path }}" | |
| # Dev mode | |
| if grep -q -E '^[^#]*LABEL\s+org\.opencontainers\.image\.devmode\s*=\s*true' "$file"; then | |
| echo "DevMode: enabled" | |
| echo "devmode=true" >> $GITHUB_OUTPUT | |
| else | |
| echo "DevMode: disabled" | |
| echo "devmode=false" >> $GITHUB_OUTPUT | |
| fi | |
| # Scan settings | |
| if grep -q -E '^[^#]*LABEL\s+org\.opencontainers\.image\.noscan\s*=\s*true' "$file"; then | |
| if grep -q -E '^[^#]*LABEL\s+org\.opencontainers\.image\.noscanreason\s*' "$file"; then | |
| reason=$(grep -E '^[^#]*LABEL\s+org\.opencontainers\.image\.noscanreason\s*' "$file") | |
| echo "Scan: disabled ($reason)" | |
| echo "noscan=true" >> $GITHUB_OUTPUT | |
| echo "noscanreason=$reason" >> $GITHUB_OUTPUT | |
| else | |
| echo "Scan: disabled but no reason provided" | |
| echo "noscan=false" >> $GITHUB_OUTPUT | |
| fi | |
| else | |
| echo "Scan: enabled" | |
| echo "noscan=false" >> $GITHUB_OUTPUT | |
| fi | |
| - name: Determine workflow execution status | |
| id: set_proceed_flag | |
| run: | | |
| files_proceed="${{ steps.changed_files.outputs.proceed_valid }}" | |
| changes_valid="${{ steps.validate_changes.outputs.valid }}" | |
| version_valid="${{ steps.validate_version.outputs.valid }}" | |
| # If files check failed, exit early | |
| if [ "$files_proceed" != "true" ]; then | |
| echo "(FAILED) File change validation failed" | |
| echo "proceed_valid=false" >> $GITHUB_OUTPUT | |
| echo "devmode=false" >> $GITHUB_OUTPUT | |
| echo "noscan=false" >> $GITHUB_OUTPUT | |
| exit 0 | |
| fi | |
| # Check version validation | |
| if [ "$version_valid" = "true" ]; then | |
| echo "(PASSED) All validations passed" | |
| echo "proceed_valid=true" >> $GITHUB_OUTPUT | |
| else | |
| echo "(FAILED) Version validation: ${{ steps.validate_version.outputs.message }}" | |
| echo "proceed_valid=false" >> $GITHUB_OUTPUT | |
| fi | |
| # Pass through outputs | |
| echo "dockerfile_path=${{ steps.validate_changes.outputs.dockerfile_path }}" >> $GITHUB_OUTPUT | |
| echo "version=${{ steps.validate_version.outputs.version }}" >> $GITHUB_OUTPUT | |
| echo "devmode=${{ steps.parse_settings.outputs.devmode || 'false' }}" >> $GITHUB_OUTPUT | |
| echo "noscan=${{ steps.parse_settings.outputs.noscan || 'false' }}" >> $GITHUB_OUTPUT | |
| - name: Generate date tag | |
| if: steps.set_proceed_flag.outputs.proceed_valid == 'true' | |
| id: date | |
| run: | | |
| date_tag=$(date +'%m-%d') | |
| echo "Date tag: $date_tag" | |
| echo "date=$date_tag" >> $GITHUB_OUTPUT | |
| BUILD-job: | |
| needs: PREPARE-job | |
| runs-on: setonix-podman02 | |
| if: needs.PREPARE-job.outputs.proceed_valid == 'true' | |
| outputs: | |
| image_tag: ${{ steps.build_container.outputs.image_tag }} | |
| dockerfile_name: ${{ steps.build_container.outputs.dockerfile_name }} | |
| steps: | |
| - name: Display build environment | |
| run: | | |
| echo "Hostname: $(hostname)" | |
| - name: Checkout source code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 # As the runs-on machine maybe different from Build, re-checkout source code. Only the current commit is needed | |
| - name: Configure podman environment | |
| id: setup_env | |
| run: | | |
| echo "Setting up container environment variables..." | |
| # Export environment variables | |
| export XDG_DATA_HOME=/container/${USER}/data | |
| export XDG_RUNTIME_DIR=/container/${USER}/runtime | |
| export TMPDIR=/container/${USER}/tmp/ | |
| # Create required directories | |
| mkdir -p ${XDG_DATA_HOME} | |
| mkdir -p ${XDG_RUNTIME_DIR} | |
| mkdir -p ${TMPDIR} | |
| # Verify directories and output status | |
| echo "Environment setup completed:" | |
| echo "USER: ${USER}" | |
| echo "XDG_DATA_HOME: ${XDG_DATA_HOME}" | |
| echo "XDG_RUNTIME_DIR: ${XDG_RUNTIME_DIR}" | |
| echo "TMPDIR: ${TMPDIR}" | |
| # Check if directories exist | |
| for dir in "${XDG_DATA_HOME}" "${XDG_RUNTIME_DIR}" "${TMPDIR}"; do | |
| if [ -d "$dir" ]; then | |
| echo "✓ Podman Directory exists: $dir" | |
| else | |
| echo "✗ Podman Directory missing: $dir" | |
| exit 1 | |
| fi | |
| done | |
| # Set environment variables for subsequent steps | |
| echo "XDG_DATA_HOME=${XDG_DATA_HOME}" >> $GITHUB_ENV | |
| echo "XDG_RUNTIME_DIR=${XDG_RUNTIME_DIR}" >> $GITHUB_ENV | |
| echo "TMPDIR=${TMPDIR}" >> $GITHUB_ENV | |
| - name: Initialize build cache | |
| id: setup_cache | |
| run: | | |
| # Setup podman cache directory | |
| CACHE_DIR="/container/${USER}/podman-cache" | |
| mkdir -p "$CACHE_DIR" | |
| echo "[CACHE SETUP]:" | |
| echo " Cache directory: $CACHE_DIR" | |
| # Configure podman to use cache | |
| export TMPDIR="${TMPDIR:-/tmp}" | |
| # Check cache size if exists | |
| if [ -d "$CACHE_DIR" ]; then | |
| cache_size=$(du -sh "$CACHE_DIR" 2>/dev/null | cut -f1 || echo "0") | |
| echo " Current cache size: $cache_size" | |
| else | |
| echo " Cache directory created (empty)" | |
| fi | |
| echo "CACHE_DIR=$CACHE_DIR" >> $GITHUB_ENV | |
| - name: Build container image | |
| id: build_container | |
| run: | | |
| # Get variables from PREPARE-job | |
| dockerfile_path="${{ needs.PREPARE-job.outputs.dockerfile_path }}" | |
| version="${{ needs.PREPARE-job.outputs.version }}" | |
| # Extract filename without extension for tag | |
| dockerfile_name=$(basename "$dockerfile_path" .dockerfile) | |
| echo "Building container with podman..." | |
| echo "Dockerfile: $dockerfile_path" | |
| echo "Tag: ${dockerfile_name}:${version}" | |
| # Build with layer caching enabled | |
| podman build --format=docker \ | |
| --layers \ | |
| -f "$dockerfile_path" \ | |
| -t "${dockerfile_name}:${version}" \ | |
| $(dirname "$dockerfile_path") | |
| # Verify the image was built | |
| if podman images | grep -q "${dockerfile_name}"; then | |
| echo "✓ Image built successfully: ${dockerfile_name}:${version}" | |
| # Show caching information | |
| echo "[LAYER CACHE]: Podman layer caching enabled" | |
| echo "[OPTIMIZATION]: Subsequent builds will reuse unchanged layers" | |
| echo "[NOTE]: APT cache within container is cleaned as per Dockerfile" | |
| # Show all images to see layer reuse | |
| echo "[ALL IMAGES]:" | |
| podman images | head -10 | |
| else | |
| echo "✗ Failed to build image: ${dockerfile_name}:${version}" | |
| exit 1 | |
| fi | |
| # Set outputs for next step | |
| # Output Variables: | |
| # - image_tag: Complete image tag with version (e.g., "ex1:0.0.5") | |
| # - dockerfile_name: Base name without extension (e.g., "ex1") | |
| echo "image_tag=${dockerfile_name}:${version}" >> $GITHUB_OUTPUT | |
| echo "dockerfile_name=${dockerfile_name}" >> $GITHUB_OUTPUT | |
| - name: Export image to archive | |
| id: save_container | |
| run: | | |
| # Get variables from previous step | |
| image_tag="${{ steps.build_container.outputs.image_tag }}" | |
| dockerfile_name="${{ steps.build_container.outputs.dockerfile_name }}" | |
| version="${{ needs.PREPARE-job.outputs.version }}" | |
| # Define output file | |
| output_file="${dockerfile_name}_${version}.tar" | |
| echo "Saving container to Docker archive..." | |
| echo "Image: $image_tag" | |
| echo "Output: $output_file" | |
| # Save with podman using Docker archive format (compatible with Trivy) | |
| podman save --format docker-archive "$image_tag" -o "$output_file" | |
| # Verify the file was created | |
| if [ -f "$output_file" ]; then | |
| file_size=$(ls -lh "$output_file" | awk '{print $5}') | |
| echo "✓ Archive saved successfully: $output_file (Size: $file_size)" | |
| else | |
| echo "✗ Failed to save archive: $output_file" | |
| exit 1 | |
| fi | |
| # Set outputs | |
| # Output Variables: | |
| # - archive_file: Archive filename only (e.g., "ex1_0.0.5.tar") | |
| # - archive_path: Full path to archive (e.g., "/home/runner/work/repo/ex1_0.0.5.tar") | |
| echo "archive_file=$output_file" >> $GITHUB_OUTPUT | |
| echo "archive_path=${PWD}/$output_file" >> $GITHUB_OUTPUT | |
| - name: Configure S3 upload client | |
| uses: ./.github/actions/setup-rclone | |
| with: | |
| access_key_id: ${{ secrets.ACACIA_ACCESS_KEY_ID }} | |
| secret_access_key: ${{ secrets.ACACIA_SECRET_ACCESS_KEY }} | |
| endpoint: https://projects.pawsey.org.au | |
| bucket: ${{ vars.ACACIA_BUCKETNAME }} | |
| destination_path: ${{ steps.save_container.outputs.archive_file }} | |
| - name: Upload archive to S3 storage | |
| id: s3_upload | |
| run: | | |
| # Get variables | |
| archive_file="${{ steps.save_container.outputs.archive_file }}" | |
| dockerfile_name="${{ steps.build_container.outputs.dockerfile_name }}" | |
| version="${{ needs.PREPARE-job.outputs.version }}" | |
| bucket="${{ vars.ACACIA_BUCKETNAME }}" | |
| echo "Uploading directly to S3 (no local storage)..." | |
| echo "Archive: $archive_file" | |
| echo "Bucket: $bucket" | |
| echo "S3 path: $archive_file" | |
| # Calculate file size for optimization | |
| FILE_SIZE=$(wc -c < "$archive_file") | |
| echo "File size: $FILE_SIZE bytes" | |
| # Set rclone parameters based on file size | |
| if [ "$FILE_SIZE" -lt $((1024 * 1024 * 500)) ]; then | |
| # < 500MB | |
| S3_CHUNK_SIZE="16M" | |
| S3_UPLOAD_CONCURRENCY=4 | |
| MULTI_THREAD_STREAMS=2 | |
| elif [ "$FILE_SIZE" -lt $((1024 * 1024 * 5000)) ]; then | |
| # 500MB - 5GB | |
| S3_CHUNK_SIZE="64M" | |
| S3_UPLOAD_CONCURRENCY=8 | |
| MULTI_THREAD_STREAMS=4 | |
| else | |
| # > 5GB | |
| S3_CHUNK_SIZE="128M" | |
| S3_UPLOAD_CONCURRENCY=16 | |
| MULTI_THREAD_STREAMS=8 | |
| fi | |
| echo "Optimized settings:" | |
| echo " S3 chunk size: $S3_CHUNK_SIZE" | |
| echo " Upload concurrency: $S3_UPLOAD_CONCURRENCY" | |
| echo " Multi-thread streams: $MULTI_THREAD_STREAMS" | |
| # Upload to S3 | |
| ./rclone copy "$archive_file" pawsey0012:"$bucket/" \ | |
| --multi-thread-streams=$MULTI_THREAD_STREAMS \ | |
| --s3-chunk-size=$S3_CHUNK_SIZE \ | |
| --s3-upload-concurrency=$S3_UPLOAD_CONCURRENCY \ | |
| --progress | |
| # Verify upload | |
| if ./rclone lsf pawsey0012:"$bucket/" | grep -q "^$archive_file$"; then | |
| echo "✓ Archive successfully uploaded to S3" | |
| echo " [BUCKET]: $bucket" | |
| echo " [S3 PATH]: $archive_file" | |
| echo " [SIZE]: $(ls -lh "$archive_file" | awk '{print $5}')" | |
| else | |
| echo "✗ Failed to verify S3 upload" | |
| exit 1 | |
| fi | |
| # Set outputs | |
| echo "s3_bucket=$bucket" >> $GITHUB_OUTPUT | |
| echo "s3_path=$archive_file" >> $GITHUB_OUTPUT | |
| - name: Load Singularity module and generate SIF file | |
| id: build_sif | |
| run: | | |
| # Get variables | |
| archive_file="${{ steps.save_container.outputs.archive_file }}" | |
| dockerfile_name="${{ steps.build_container.outputs.dockerfile_name }}" | |
| version="${{ needs.PREPARE-job.outputs.version }}" | |
| # Define SIF output file | |
| sif_file="${dockerfile_name}_${version}.sif" | |
| echo "Loading Singularity module and generating SIF file..." | |
| echo "Source: docker-archive://$archive_file" | |
| echo "Output: $sif_file" | |
| # Load Singularity module | |
| echo "Loading Singularity module..." | |
| if module load singularity/4.1.0; then | |
| echo "✓ Singularity module loaded successfully" | |
| else | |
| echo "✗ Failed to load Singularity module" | |
| exit 1 | |
| fi | |
| # Verify Singularity is available | |
| singularity --version | |
| # Build SIF file from Docker archive using Singularity | |
| echo "Building SIF file from Docker archive..." | |
| if singularity build "$sif_file" "docker-archive://$archive_file"; then | |
| if [ -f "$sif_file" ]; then | |
| file_size=$(ls -lh "$sif_file" | awk '{print $5}') | |
| echo "✓ SIF file generated successfully: $sif_file (Size: $file_size)" | |
| else | |
| echo "✗ SIF file generation failed - file not found" | |
| exit 1 | |
| fi | |
| else | |
| echo "✗ Failed to generate SIF file" | |
| exit 1 | |
| fi | |
| # Set outputs | |
| echo "sif_file=$sif_file" >> $GITHUB_OUTPUT | |
| echo "sif_path=${PWD}/$sif_file" >> $GITHUB_OUTPUT | |
| - name: Configure S3 upload for SIF file | |
| uses: ./.github/actions/setup-rclone | |
| with: | |
| access_key_id: ${{ secrets.ACACIA_ACCESS_KEY_ID }} | |
| secret_access_key: ${{ secrets.ACACIA_SECRET_ACCESS_KEY }} | |
| endpoint: https://projects.pawsey.org.au | |
| bucket: ${{ vars.ACACIA_SIF_BUCKETNAME }} | |
| destination_path: ${{ steps.build_sif.outputs.sif_file }} | |
| - name: Upload SIF file to S3 storage | |
| id: s3_sif_upload | |
| run: | | |
| # Get variables | |
| sif_file="${{ steps.build_sif.outputs.sif_file }}" | |
| dockerfile_name="${{ steps.build_container.outputs.dockerfile_name }}" | |
| version="${{ needs.PREPARE-job.outputs.version }}" | |
| sif_bucket="${{ vars.ACACIA_SIF_BUCKETNAME }}" | |
| echo "Uploading SIF file to S3..." | |
| echo "SIF file: $sif_file" | |
| echo "Bucket: $sif_bucket" | |
| echo "S3 path: $sif_file" | |
| # Calculate file size for optimization | |
| FILE_SIZE=$(wc -c < "$sif_file") | |
| echo "File size: $FILE_SIZE bytes" | |
| # Set rclone parameters based on file size | |
| if [ "$FILE_SIZE" -lt $((1024 * 1024 * 500)) ]; then | |
| # < 500MB | |
| S3_CHUNK_SIZE="16M" | |
| S3_UPLOAD_CONCURRENCY=4 | |
| MULTI_THREAD_STREAMS=2 | |
| elif [ "$FILE_SIZE" -lt $((1024 * 1024 * 5000)) ]; then | |
| # 500MB - 5GB | |
| S3_CHUNK_SIZE="64M" | |
| S3_UPLOAD_CONCURRENCY=8 | |
| MULTI_THREAD_STREAMS=4 | |
| else | |
| # > 5GB | |
| S3_CHUNK_SIZE="128M" | |
| S3_UPLOAD_CONCURRENCY=16 | |
| MULTI_THREAD_STREAMS=8 | |
| fi | |
| echo "Optimized settings for SIF upload:" | |
| echo " S3 chunk size: $S3_CHUNK_SIZE" | |
| echo " Upload concurrency: $S3_UPLOAD_CONCURRENCY" | |
| echo " Multi-thread streams: $MULTI_THREAD_STREAMS" | |
| # Upload SIF to S3 | |
| ./rclone copy "$sif_file" pawsey0012:"$sif_bucket/" \ | |
| --multi-thread-streams=$MULTI_THREAD_STREAMS \ | |
| --s3-chunk-size=$S3_CHUNK_SIZE \ | |
| --s3-upload-concurrency=$S3_UPLOAD_CONCURRENCY \ | |
| --progress | |
| # Verify upload | |
| if ./rclone lsf pawsey0012:"$sif_bucket/" | grep -q "^$sif_file$"; then | |
| echo "✓ SIF file successfully uploaded to S3" | |
| echo " [BUCKET]: $sif_bucket" | |
| echo " [S3 PATH]: $sif_file" | |
| echo " [SIZE]: $(ls -lh "$sif_file" | awk '{print $5}')" | |
| else | |
| echo "✗ Failed to verify SIF S3 upload" | |
| exit 1 | |
| fi | |
| # Set outputs | |
| echo "s3_sif_bucket=$sif_bucket" >> $GITHUB_OUTPUT | |
| echo "s3_sif_path=$sif_file" >> $GITHUB_OUTPUT | |
| SCAN-AND-REPORT-job: | |
| needs: [BUILD-job, PREPARE-job] | |
| runs-on: setonix-podman02 | |
| if: needs.PREPARE-job.outputs.proceed_valid == 'true' && needs.PREPARE-job.outputs.noscan != 'true' | |
| env: | |
| DOCKERFILE_NAME: ${{ needs.BUILD-job.outputs.dockerfile_name }} | |
| VERSION: ${{ needs.PREPARE-job.outputs.version }} | |
| REPORT_DIR: ./trivy-reports | |
| steps: | |
| - name: Display scan environment | |
| run: | | |
| echo "Hostname: $(hostname)" | |
| - name: Download archive from S3 | |
| id: locate | |
| uses: ./.github/actions/setup-rclone | |
| with: | |
| access_key_id: ${{ secrets.ACACIA_ACCESS_KEY_ID }} | |
| secret_access_key: ${{ secrets.ACACIA_SECRET_ACCESS_KEY }} | |
| endpoint: https://projects.pawsey.org.au | |
| bucket: ${{ vars.ACACIA_BUCKETNAME }} | |
| destination_path: ${{ env.DOCKERFILE_NAME }}_${{ env.VERSION }}.tar | |
| download_mode: true | |
| dockerfile_name: ${{ env.DOCKERFILE_NAME }} | |
| version: ${{ env.VERSION }} | |
| load_to_podman: false | |
| - name: Initialize scan workspace | |
| run: | | |
| mkdir -p "${REPORT_DIR}" | |
| echo "Report directory created: ${REPORT_DIR}" | |
| # Generate JSON report first | |
| - name: Run vulnerability scan (JSON) | |
| uses: aquasecurity/trivy-action@master | |
| with: | |
| scan-type: image | |
| input: ./${{ steps.locate.outputs.archive_name }} | |
| format: json | |
| output: ${{ env.REPORT_DIR }}/scan-results.json | |
| severity: CRITICAL,HIGH,MEDIUM,LOW,UNKNOWN | |
| ignore-unfixed: true | |
| vuln-type: os,library | |
| exit-code: '0' | |
| hide-progress: true | |
| cache: true | |
| env: | |
| TRIVY_SKIP_DB_UPDATE: false | |
| TRIVY_SKIP_JAVA_DB_UPDATE: false | |
| # Process JSON to create readable summary | |
| - name: Process scan results to summary | |
| run: | | |
| python3 -c " | |
| import json | |
| import sys | |
| import os | |
| json_file = '${REPORT_DIR}/scan-results.json' | |
| output_file = '${REPORT_DIR}/summary.md' | |
| try: | |
| with open(json_file, 'r') as f: | |
| data = json.load(f) | |
| # Initialize counters | |
| counts = {'CRITICAL': 0, 'HIGH': 0, 'MEDIUM': 0, 'LOW': 0, 'UNKNOWN': 0} | |
| vulnerabilities = [] | |
| # Process results | |
| if 'Results' in data and data['Results']: | |
| for result in data['Results']: | |
| if 'Vulnerabilities' in result and result['Vulnerabilities']: | |
| for vuln in result['Vulnerabilities']: | |
| severity = vuln.get('Severity', 'UNKNOWN') | |
| if severity in counts: | |
| counts[severity] += 1 | |
| vulnerabilities.append(vuln) | |
| # Generate summary | |
| with open(output_file, 'w') as f: | |
| artifact_name = data.get('ArtifactName', 'Unknown') | |
| f.write(f'## Trivy Scan Summary — {artifact_name}\n\n') | |
| f.write(f'**Target:** {artifact_name}\n') | |
| f.write(f'**Total Vulnerabilities:** {sum(counts.values())}\n\n') | |
| f.write('### Severity Counts\n') | |
| for severity, count in counts.items(): | |
| if count > 0: | |
| f.write(f'- **{severity}:** {count}\n') | |
| else: | |
| f.write(f'- {severity}: {count}\n') | |
| f.write('\n') | |
| # Show critical and high details | |
| critical_high = [v for v in vulnerabilities if v.get('Severity') in ['CRITICAL', 'HIGH']] | |
| if critical_high: | |
| f.write('### Critical & High Severity Vulnerabilities\n\n') | |
| f.write('| Severity | CVE ID | Package | Installed | Fixed |\n') | |
| f.write('|----------|--------|---------|-----------|-------|\n') | |
| for vuln in critical_high[:15]: # Limit to first 15 | |
| severity = vuln.get('Severity', 'N/A') | |
| cve_id = vuln.get('VulnerabilityID', 'N/A') | |
| pkg = vuln.get('PkgName', 'N/A') | |
| installed = vuln.get('InstalledVersion', 'N/A') | |
| fixed = vuln.get('FixedVersion', 'N/A') or '❌' | |
| f.write(f'| {severity} | {cve_id} | {pkg} | {installed} | {fixed} |\n') | |
| if len(critical_high) > 15: | |
| f.write(f'\n*... and {len(critical_high) - 15} more critical/high vulnerabilities.*\n') | |
| elif sum(counts.values()) > 0: | |
| f.write('### Good News! 🎉\n\n') | |
| f.write('No CRITICAL or HIGH severity vulnerabilities found.\n') | |
| if counts['MEDIUM'] > 0: | |
| f.write(f'Only {counts[\"MEDIUM\"]} MEDIUM severity issues detected.\n') | |
| else: | |
| f.write('### Excellent! ✅\n\n') | |
| f.write('No vulnerabilities found in this image.\n') | |
| print(f'Successfully generated summary: {output_file}') | |
| except Exception as e: | |
| with open(output_file, 'w') as f: | |
| f.write(f'### ❌ Error Processing Scan Results\n\n') | |
| f.write(f'**Error:** {str(e)}\n\n') | |
| f.write(f'**JSON file:** {json_file}\n') | |
| f.write(f'**File exists:** {os.path.exists(json_file)}\n') | |
| print(f'Error: {e}', file=sys.stderr) | |
| " | |
| - name: Debug scan output | |
| run: | | |
| echo "=== Trivy output file exists? ===" | |
| ls -la "${REPORT_DIR}/summary.md" || echo "Summary file not found" | |
| echo "" | |
| echo "=== Trivy output content ===" | |
| cat "${REPORT_DIR}/summary.md" || echo "Cannot read summary file" | |
| echo "" | |
| echo "=== Report directory contents ===" | |
| ls -la "${REPORT_DIR}/" || echo "Report directory not found" | |
| - name: Publish scan report to workflow summary | |
| run: | | |
| { | |
| echo "## Trivy Scan Report for \`${{ env.DOCKERFILE_NAME }}\`" | |
| echo "" | |
| echo "- **Scan target**: \`${{ steps.locate.outputs.archive_name }}\`" | |
| echo "- **Archive source**: \`${{ steps.locate.outputs.archive_path }}\`" | |
| echo "- **Version**: \`${{ env.VERSION }}\`" | |
| echo "" | |
| # Check if summary file exists and has content | |
| if [ -f "${REPORT_DIR}/summary.md" ] && [ -s "${REPORT_DIR}/summary.md" ]; then | |
| echo "### Scan Results" | |
| cat "${REPORT_DIR}/summary.md" | |
| else | |
| echo "### ⚠️ Scan Results" | |
| echo "" | |
| echo "**Status:** Summary file not generated or empty" | |
| echo "" | |
| echo "**Possible causes:**" | |
| echo "- Trivy template processing failed" | |
| echo "- Archive file format issue" | |
| echo "- Trivy action configuration problem" | |
| echo "" | |
| echo "**Debug info:**" | |
| echo "- Template file: \`.github/trivy-summary.tpl\`" | |
| echo "- Expected output: \`${REPORT_DIR}/summary.md\`" | |
| echo "" | |
| echo "Check the debug steps above for more details." | |
| fi | |
| } >> "$GITHUB_STEP_SUMMARY" | |
| # Generate SARIF report for GitHub Security | |
| - name: Generate security report (SARIF) | |
| uses: aquasecurity/trivy-action@master | |
| if: always() | |
| with: | |
| scan-type: image | |
| input: ./${{ steps.locate.outputs.archive_name }} | |
| format: sarif | |
| output: ${{ env.REPORT_DIR }}/trivy-results.sarif | |
| severity: CRITICAL,HIGH,MEDIUM | |
| ignore-unfixed: true | |
| vuln-type: os,library | |
| exit-code: '0' | |
| hide-progress: true | |
| cache: true | |
| env: | |
| TRIVY_SKIP_DB_UPDATE: true | |
| TRIVY_SKIP_JAVA_DB_UPDATE: true | |
| - name: Upload security findings to GitHub | |
| uses: github/codeql-action/upload-sarif@v3 | |
| if: always() | |
| with: | |
| sarif_file: ${{ env.REPORT_DIR }}/trivy-results.sarif | |
| - name: Archive scan reports | |
| uses: actions/upload-artifact@v4 | |
| if: always() | |
| with: | |
| name: trivy-reports-${{ env.DOCKERFILE_NAME }}-${{ env.VERSION }} | |
| path: ${{ env.REPORT_DIR }}/ | |
| retention-days: 30 | |
| PUSH-PRIV-job: | |
| needs: [BUILD-job, PREPARE-job] | |
| runs-on: setonix-podman02 | |
| if: needs.PREPARE-job.outputs.proceed_valid == 'true' | |
| env: | |
| DOCKERFILE_NAME: ${{ needs.BUILD-job.outputs.dockerfile_name }} | |
| VERSION: ${{ needs.PREPARE-job.outputs.version }} | |
| BUCKET: ${{ vars.ACACIA_BUCKETNAME }} | |
| steps: | |
| - name: Display registry environment | |
| run: | | |
| echo "Hostname: $(hostname)" | |
| - name: Download archive from S3 | |
| id: locate_archive | |
| uses: ./.github/actions/setup-rclone | |
| with: | |
| access_key_id: ${{ secrets.ACACIA_ACCESS_KEY_ID }} | |
| secret_access_key: ${{ secrets.ACACIA_SECRET_ACCESS_KEY }} | |
| endpoint: https://projects.pawsey.org.au | |
| bucket: ${{ env.BUCKET }} | |
| destination_path: ${{ env.DOCKERFILE_NAME }}_${{ env.VERSION }}.tar | |
| download_mode: true | |
| dockerfile_name: ${{ env.DOCKERFILE_NAME }} | |
| version: ${{ env.VERSION }} | |
| load_to_podman: false | |
| - name: Push to Setonix private registry | |
| if: needs.PREPARE-job.outputs.setonixreg_available == 'true' | |
| continue-on-error: true | |
| run: | | |
| set +e # Don't exit on errors to allow independent execution | |
| echo "==========================================" | |
| echo " Setonix Registry Push Process" | |
| echo "==========================================" | |
| # Load image from archive first | |
| echo "📦 Loading image from archive..." | |
| archive_file="${{ steps.locate_archive.outputs.archive_name }}" | |
| if podman load -i "$archive_file"; then | |
| echo "✓ Image loaded successfully from archive" | |
| else | |
| echo "✗ Failed to load image from archive" | |
| exit 1 | |
| fi | |
| # Login to Setonix Registry | |
| echo "🔐 Logging into Setonix Registry..." | |
| if podman login https://setonix-registry.pawsey.org.au -u "${{ vars.SETONIXREG_USERNAME }}" -p "${{ secrets.SETONIXREG_PASS }}"; then | |
| echo "✓ Setonix Registry login successful" | |
| else | |
| echo "✗ Setonix Registry login failed" | |
| exit 1 | |
| fi | |
| # Tag and push | |
| image_tag="${DOCKERFILE_NAME}:${VERSION}" | |
| setonix_tag="setonix-registry.pawsey.org.au/${{ vars.SETONIXREG_USERNAME }}/${DOCKERFILE_NAME}:${VERSION}" | |
| echo "" | |
| echo "🏷️ Tagging image for Setonix Registry:" | |
| echo " Source: $image_tag" | |
| echo " Target: $setonix_tag" | |
| if podman tag "$image_tag" "$setonix_tag"; then | |
| echo "✓ Image tagged successfully" | |
| else | |
| echo "✗ Image tagging failed" | |
| exit 1 | |
| fi | |
| echo "" | |
| echo "📤 Pushing to Setonix Registry..." | |
| if podman push "$setonix_tag"; then | |
| echo "✅ Successfully pushed to Setonix Registry: $setonix_tag" | |
| else | |
| echo "❌ Failed to push to Setonix Registry" | |
| exit 1 | |
| fi | |
| # Cleanup local tagged image | |
| echo "" | |
| echo "🧹 Cleaning up local Setonix tagged image..." | |
| podman rmi "$setonix_tag" 2>/dev/null || echo " (Setonix tag already removed or not found)" | |
| podman rmi "$image_tag" 2>/dev/null || echo " (Base image already removed or not found)" | |
| PUSH-PUBLIC-job: | |
| needs: [BUILD-job, PREPARE-job, PUSH-PRIV-job] | |
| runs-on: setonix-podman02 | |
| if: needs.PREPARE-job.outputs.proceed_valid == 'true' | |
| environment: | |
| name: manual_approval | |
| env: | |
| DOCKERFILE_NAME: ${{ needs.BUILD-job.outputs.dockerfile_name }} | |
| VERSION: ${{ needs.PREPARE-job.outputs.version }} | |
| steps: | |
| - name: Display public registry push plan | |
| run: | | |
| echo "Hostname: $(hostname)" | |
| echo "" | |
| echo "=== Public Registry Push Plan ===" | |
| echo "Registry credentials were checked in PREPARE-job:" | |
| echo "" | |
| # Show Docker Hub push plan | |
| if [ "${{ needs.PREPARE-job.outputs.dockerhub_available }}" = "true" ]; then | |
| echo "[✓] Docker Hub: Will push to ${{ vars.DOCKERHUB_USERNAME }}/${DOCKERFILE_NAME}:${VERSION}" | |
| else | |
| echo "[skip] Docker Hub: Skipping (credentials not available)" | |
| fi | |
| # Show Quay.io push plan | |
| if [ "${{ needs.PREPARE-job.outputs.quayio_available }}" = "true" ]; then | |
| echo "[✓] Quay.io: Will push to quay.io/${{ vars.QUAYIO_USERNAME }}/${DOCKERFILE_NAME}:${VERSION}" | |
| else | |
| echo "[skip] Quay.io: Skipping (credentials not available)" | |
| fi | |
| # Show Setonix Registry status | |
| if [ "${{ needs.PREPARE-job.outputs.setonixreg_available }}" = "true" ]; then | |
| echo "[✓] Setonix Private Registry: Already pushed in PUSH-PRIV-job" | |
| echo "[✓] Setonix Public Registry: Will push to setonix-registry.pawsey.org.au/pawsey/${DOCKERFILE_NAME}:${VERSION}" | |
| else | |
| echo "[skip] Setonix Registries: Skipped (credentials not available)" | |
| fi | |
| # Check if any public registry is available | |
| if [ "${{ needs.PREPARE-job.outputs.dockerhub_available }}" != "true" ] && [ "${{ needs.PREPARE-job.outputs.quayio_available }}" != "true" ] && [ "${{ needs.PREPARE-job.outputs.setonixreg_available }}" != "true" ]; then | |
| echo "" | |
| echo "[INFO] No public registry pushes will be performed in this job." | |
| echo "Note: All registry credentials are not available." | |
| fi | |
| echo "" | |
| - name: Download archive and load to podman | |
| id: locate_and_load | |
| if: needs.PREPARE-job.outputs.dockerhub_available == 'true' || needs.PREPARE-job.outputs.quayio_available == 'true' || needs.PREPARE-job.outputs.setonixreg_available == 'true' | |
| uses: ./.github/actions/setup-rclone | |
| with: | |
| access_key_id: ${{ secrets.ACACIA_ACCESS_KEY_ID }} | |
| secret_access_key: ${{ secrets.ACACIA_SECRET_ACCESS_KEY }} | |
| endpoint: https://projects.pawsey.org.au | |
| bucket: ${{ vars.ACACIA_BUCKETNAME }} | |
| destination_path: ${{ env.DOCKERFILE_NAME }}_${{ env.VERSION }}.tar | |
| download_mode: true | |
| dockerfile_name: ${{ env.DOCKERFILE_NAME }} | |
| version: ${{ env.VERSION }} | |
| load_to_podman: true | |
| - name: Display skip message for missing credentials | |
| if: needs.PREPARE-job.outputs.dockerhub_available != 'true' && needs.PREPARE-job.outputs.quayio_available != 'true' && needs.PREPARE-job.outputs.setonixreg_available != 'true' | |
| run: | | |
| echo "" | |
| echo "==========================================" | |
| echo " Public Registry Push: SKIPPED" | |
| echo "==========================================" | |
| echo "" | |
| echo "No public registry credentials were found." | |
| echo "The workflow will complete successfully without pushing to public registries." | |
| echo "" | |
| echo "This is normal behavior when:" | |
| echo "• You only want to use private storage (S3)" | |
| echo "• Credentials are not yet configured" | |
| echo "• Testing the build pipeline" | |
| echo "" | |
| echo "To enable public registry pushes in the future, configure:" | |
| echo "• Docker Hub: Set DOCKERHUB_USERNAME (repo variable) and DOCKERHUB_TOKEN (repo secret)" | |
| echo "• Quay.io: Set QUAYIO_USERNAME (repo variable) and QUAYIO_TOKEN (repo secret)" | |
| echo "" | |
| echo "[✓] Job completed successfully (no action required)" | |
| echo "" | |
| - name: Initialize Docker configuration | |
| if: needs.PREPARE-job.outputs.dockerhub_available == 'true' || needs.PREPARE-job.outputs.quayio_available == 'true' || needs.PREPARE-job.outputs.setonixreg_available == 'true' | |
| run: | | |
| mkdir -p ~/.docker | |
| echo "Created Docker config directory: ~/.docker" | |
| # ============================================ | |
| # Docker Hub Push (Independent Operation) | |
| # ============================================ | |
| - name: Push to Docker Hub public registry | |
| if: needs.PREPARE-job.outputs.dockerhub_available == 'true' | |
| continue-on-error: true | |
| run: | | |
| set +e # Don't exit on errors to allow independent execution | |
| echo "==========================================" | |
| echo " Docker Hub Push Process" | |
| echo "==========================================" | |
| # Login to Docker Hub | |
| echo "🔐 Logging into Docker Hub..." | |
| if podman login docker.io -u "${{ vars.DOCKERHUB_USERNAME }}" -p "${{ secrets.DOCKERHUB_TOKEN }}"; then | |
| echo "✓ Docker Hub login successful" | |
| else | |
| echo "✗ Docker Hub login failed" | |
| exit 1 | |
| fi | |
| # Tag and push | |
| image_tag="${{ steps.locate_and_load.outputs.image_tag }}" | |
| dockerhub_tag="${{ vars.DOCKERHUB_USERNAME }}/${DOCKERFILE_NAME}:${VERSION}" | |
| echo "" | |
| echo "🏷️ Tagging image for Docker Hub:" | |
| echo " Source: $image_tag" | |
| echo " Target: $dockerhub_tag" | |
| if podman tag "$image_tag" "$dockerhub_tag"; then | |
| echo "✓ Image tagged successfully" | |
| else | |
| echo "✗ Image tagging failed" | |
| exit 1 | |
| fi | |
| echo "" | |
| echo "📤 Pushing to Docker Hub..." | |
| if podman push "$dockerhub_tag"; then | |
| echo "✅ Successfully pushed to Docker Hub: $dockerhub_tag" | |
| else | |
| echo "❌ Failed to push to Docker Hub" | |
| exit 1 | |
| fi | |
| # ============================================ | |
| # Quay.io Push (Independent Operation) | |
| # ============================================ | |
| - name: Push to Quay.io public registry | |
| if: needs.PREPARE-job.outputs.quayio_available == 'true' | |
| continue-on-error: true | |
| run: | | |
| set +e # Don't exit on errors to allow independent execution | |
| echo "==========================================" | |
| echo " Quay.io Push Process" | |
| echo "==========================================" | |
| # Login to Quay.io | |
| echo "🔐 Logging into Quay.io..." | |
| if podman login quay.io -u "${{ vars.QUAYIO_USERNAME }}" -p "${{ secrets.QUAYIO_TOKEN }}"; then | |
| echo "✓ Quay.io login successful" | |
| else | |
| echo "✗ Quay.io login failed" | |
| exit 1 | |
| fi | |
| # Tag and push | |
| image_tag="${{ steps.locate_and_load.outputs.image_tag }}" | |
| quayio_tag="quay.io/${{ vars.QUAYIO_USERNAME }}/${DOCKERFILE_NAME}:${VERSION}" | |
| echo "" | |
| echo "🏷️ Tagging image for Quay.io:" | |
| echo " Source: $image_tag" | |
| echo " Target: $quayio_tag" | |
| if podman tag "$image_tag" "$quayio_tag"; then | |
| echo "✓ Image tagged successfully" | |
| else | |
| echo "✗ Image tagging failed" | |
| exit 1 | |
| fi | |
| echo "" | |
| echo "📤 Pushing to Quay.io..." | |
| if podman push "$quayio_tag"; then | |
| echo "✅ Successfully pushed to Quay.io: $quayio_tag" | |
| else | |
| echo "❌ Failed to push to Quay.io" | |
| exit 1 | |
| fi | |
| # ============================================ | |
| # Setonix Public Registry Push (Independent Operation) | |
| # ============================================ | |
| - name: Push to Setonix public registry | |
| if: needs.PREPARE-job.outputs.setonixreg_available == 'true' | |
| continue-on-error: true | |
| run: | | |
| set +e # Don't exit on errors to allow independent execution | |
| echo "==========================================" | |
| echo " Setonix Public Registry Push Process" | |
| echo "==========================================" | |
| # Login to Setonix Registry | |
| echo "🔐 Logging into Setonix Registry..." | |
| if podman login https://setonix-registry.pawsey.org.au -u "${{ vars.SETONIXREG_USERNAME }}" -p "${{ secrets.SETONIXREG_PASS }}"; then | |
| echo "✓ Setonix Registry login successful" | |
| else | |
| echo "✗ Setonix Registry login failed" | |
| exit 1 | |
| fi | |
| # Tag and push to public channel | |
| image_tag="${{ steps.locate_and_load.outputs.image_tag }}" | |
| setonix_public_tag="setonix-registry.pawsey.org.au/pawsey/${DOCKERFILE_NAME}:${VERSION}" | |
| echo "" | |
| echo "🏷️ Tagging image for Setonix Public Registry:" | |
| echo " Source: $image_tag" | |
| echo " Target: $setonix_public_tag" | |
| if podman tag "$image_tag" "$setonix_public_tag"; then | |
| echo "✓ Image tagged successfully" | |
| else | |
| echo "✗ Image tagging failed" | |
| exit 1 | |
| fi | |
| echo "" | |
| echo "📤 Pushing to Setonix Public Registry..." | |
| if podman push "$setonix_public_tag"; then | |
| echo "✅ Successfully pushed to Setonix Public Registry: $setonix_public_tag" | |
| else | |
| echo "❌ Failed to push to Setonix Public Registry" | |
| exit 1 | |
| fi | |
| - name: Clean up podman images | |
| if: always() && (needs.PREPARE-job.outputs.dockerhub_available == 'true' || needs.PREPARE-job.outputs.quayio_available == 'true' || needs.PREPARE-job.outputs.setonixreg_available == 'true') | |
| run: | | |
| echo "🧹 Cleaning up local images..." | |
| image_tag="${{ steps.locate_and_load.outputs.image_tag }}" | |
| # Remove original image | |
| echo "Removing base image: $image_tag" | |
| podman rmi "$image_tag" 2>/dev/null || echo " (Base image already removed or not found)" | |
| # Remove Docker Hub tagged image if it was created | |
| if [ "${{ needs.PREPARE-job.outputs.dockerhub_available }}" = "true" ]; then | |
| dockerhub_tag="${{ vars.DOCKERHUB_USERNAME }}/${DOCKERFILE_NAME}:${VERSION}" | |
| echo "Removing Docker Hub tag: $dockerhub_tag" | |
| podman rmi "$dockerhub_tag" 2>/dev/null || echo " (Docker Hub tag already removed or not found)" | |
| fi | |
| # Remove Quay.io tagged image if it was created | |
| if [ "${{ needs.PREPARE-job.outputs.quayio_available }}" = "true" ]; then | |
| quayio_tag="quay.io/${{ vars.QUAYIO_USERNAME }}/${DOCKERFILE_NAME}:${VERSION}" | |
| echo "Removing Quay.io tag: $quayio_tag" | |
| podman rmi "$quayio_tag" 2>/dev/null || echo " (Quay.io tag already removed or not found)" | |
| fi | |
| # Remove Setonix Public Registry tagged image if it was created | |
| if [ "${{ needs.PREPARE-job.outputs.setonixreg_available }}" = "true" ]; then | |
| setonix_public_tag="setonix-registry.pawsey.org.au/pawsey/${DOCKERFILE_NAME}:${VERSION}" | |
| echo "Removing Setonix Public tag: $setonix_public_tag" | |
| podman rmi "$setonix_public_tag" 2>/dev/null || echo " (Setonix Public tag already removed or not found)" | |
| fi | |
| echo "✅ Local image cleanup completed" | |
| SUMMARY-job: | |
| needs: [BUILD-job, PREPARE-job, PUSH-PRIV-job, PUSH-PUBLIC-job] | |
| runs-on: ubuntu-latest | |
| if: always() && needs.PREPARE-job.outputs.proceed_valid == 'true' | |
| env: | |
| DOCKERFILE_NAME: ${{ needs.BUILD-job.outputs.dockerfile_name }} | |
| VERSION: ${{ needs.PREPARE-job.outputs.version }} | |
| steps: | |
| - name: Generate deployment summary | |
| run: | | |
| { | |
| echo "# 🚀 Container Build and Deployment Summary" | |
| echo "" | |
| echo "**Image:** \`${{ env.DOCKERFILE_NAME }}:${{ env.VERSION }}\`" | |
| echo "**Build Status:** ✅ Completed" | |
| echo "**Timestamp:** $(date '+%Y-%m-%d %H:%M:%S UTC')" | |
| echo "" | |
| echo "## 📦 Archive Storage" | |
| echo "" | |
| echo "| Location | Address | Status |" | |
| echo "|----------|---------|--------|" | |
| # S3 Docker Archive Storage | |
| if [ "${{ needs.BUILD-job.result }}" = "success" ]; then | |
| echo "| S3 Docker Archive | \`s3://pawsey0012:${{ vars.ACACIA_BUCKETNAME }}/${{ env.DOCKERFILE_NAME }}_${{ env.VERSION }}.tar\` | ✅ Uploaded |" | |
| else | |
| echo "| S3 Docker Archive | \`s3://pawsey0012:${{ vars.ACACIA_BUCKETNAME }}/${{ env.DOCKERFILE_NAME }}_${{ env.VERSION }}.tar\` | ❌ Failed |" | |
| fi | |
| # S3 Singularity SIF Storage | |
| if [ "${{ needs.BUILD-job.result }}" = "success" ]; then | |
| echo "| S3 Singularity SIF | \`s3://pawsey0012:${{ vars.ACACIA_SIF_BUCKETNAME }}/${{ env.DOCKERFILE_NAME }}_${{ env.VERSION }}.sif\` | ✅ Uploaded |" | |
| else | |
| echo "| S3 Singularity SIF | \`s3://pawsey0012:${{ vars.ACACIA_SIF_BUCKETNAME }}/${{ env.DOCKERFILE_NAME }}_${{ env.VERSION }}.sif\` | ❌ Failed |" | |
| fi | |
| echo "" | |
| echo "## 🏗️ Container Registry Deployments" | |
| echo "" | |
| echo "| Registry | Address | Status |" | |
| echo "|----------|---------|--------|" | |
| # Setonix Private Registry | |
| if [ "${{ needs.PREPARE-job.outputs.setonixreg_available }}" = "true" ] && [ "${{ needs.PUSH-PRIV-job.result }}" = "success" ]; then | |
| echo "| Setonix Private | \`setonix-registry.pawsey.org.au/${{ vars.SETONIXREG_USERNAME }}/${{ env.DOCKERFILE_NAME }}:${{ env.VERSION }}\` | ✅ Pushed |" | |
| elif [ "${{ needs.PREPARE-job.outputs.setonixreg_available }}" = "true" ]; then | |
| echo "| Setonix Private | \`setonix-registry.pawsey.org.au/${{ vars.SETONIXREG_USERNAME }}/${{ env.DOCKERFILE_NAME }}:${{ env.VERSION }}\` | ❌ Failed |" | |
| else | |
| echo "| Setonix Private | \`setonix-registry.pawsey.org.au/${{ vars.SETONIXREG_USERNAME }}/${{ env.DOCKERFILE_NAME }}:${{ env.VERSION }}\` | ⏭️ Skipped (No credentials) |" | |
| fi | |
| # Setonix Public Registry | |
| if [ "${{ needs.PREPARE-job.outputs.setonixreg_available }}" = "true" ] && [ "${{ needs.PUSH-PUBLIC-job.result }}" = "success" ]; then | |
| echo "| Setonix Public | \`setonix-registry.pawsey.org.au/pawsey/${{ env.DOCKERFILE_NAME }}:${{ env.VERSION }}\` | ✅ Pushed |" | |
| elif [ "${{ needs.PREPARE-job.outputs.setonixreg_available }}" = "true" ]; then | |
| echo "| Setonix Public | \`setonix-registry.pawsey.org.au/pawsey/${{ env.DOCKERFILE_NAME }}:${{ env.VERSION }}\` | ❌ Failed |" | |
| else | |
| echo "| Setonix Public | \`setonix-registry.pawsey.org.au/pawsey/${{ env.DOCKERFILE_NAME }}:${{ env.VERSION }}\` | ⏭️ Skipped (No credentials) |" | |
| fi | |
| # Docker Hub | |
| if [ "${{ needs.PREPARE-job.outputs.dockerhub_available }}" = "true" ] && [ "${{ needs.PUSH-PUBLIC-job.result }}" = "success" ]; then | |
| echo "| Docker Hub | \`docker.io/${{ vars.DOCKERHUB_USERNAME }}/${{ env.DOCKERFILE_NAME }}:${{ env.VERSION }}\` | ✅ Pushed |" | |
| elif [ "${{ needs.PREPARE-job.outputs.dockerhub_available }}" = "true" ]; then | |
| echo "| Docker Hub | \`docker.io/${{ vars.DOCKERHUB_USERNAME }}/${{ env.DOCKERFILE_NAME }}:${{ env.VERSION }}\` | ❌ Failed |" | |
| else | |
| echo "| Docker Hub | \`docker.io/${{ vars.DOCKERHUB_USERNAME }}/${{ env.DOCKERFILE_NAME }}:${{ env.VERSION }}\` | ⏭️ Skipped (No credentials) |" | |
| fi | |
| # Quay.io | |
| if [ "${{ needs.PREPARE-job.outputs.quayio_available }}" = "true" ] && [ "${{ needs.PUSH-PUBLIC-job.result }}" = "success" ]; then | |
| echo "| Quay.io | \`quay.io/${{ vars.QUAYIO_USERNAME }}/${{ env.DOCKERFILE_NAME }}:${{ env.VERSION }}\` | ✅ Pushed |" | |
| elif [ "${{ needs.PREPARE-job.outputs.quayio_available }}" = "true" ]; then | |
| echo "| Quay.io | \`quay.io/${{ vars.QUAYIO_USERNAME }}/${{ env.DOCKERFILE_NAME }}:${{ env.VERSION }}\` | ❌ Failed |" | |
| else | |
| echo "| Quay.io | \`quay.io/${{ vars.QUAYIO_USERNAME }}/${{ env.DOCKERFILE_NAME }}:${{ env.VERSION }}\` | ⏭️ Skipped (No credentials) |" | |
| fi | |
| echo "" | |
| echo "## 🔧 Container Usage Commands" | |
| echo "" | |
| echo "### Singularity Usage" | |
| echo "" | |
| echo "Download and use the SIF file directly:" | |
| echo "\`\`\`bash" | |
| echo "# Download SIF file from S3 (requires rclone configuration)" | |
| echo "rclone copy pawsey0012:${{ vars.ACACIA_SIF_BUCKETNAME }}/${{ env.DOCKERFILE_NAME }}_${{ env.VERSION }}.sif ./" | |
| echo "" | |
| echo "# Run with Singularity" | |
| echo "singularity exec ${{ env.DOCKERFILE_NAME }}_${{ env.VERSION }}.sif <command>" | |
| echo "# or" | |
| echo "singularity run ${{ env.DOCKERFILE_NAME }}_${{ env.VERSION }}.sif" | |
| echo "\`\`\`" | |
| echo "" | |
| echo "### Container Engine Pull Commands" | |
| echo "" | |
| echo "Use the following commands to pull the container image:" | |
| echo "" | |
| # Generate pull commands for successful pushes | |
| if [ "${{ needs.PREPARE-job.outputs.setonixreg_available }}" = "true" ] && [ "${{ needs.PUSH-PRIV-job.result }}" = "success" ]; then | |
| echo "### Setonix Private Registry" | |
| echo "\`\`\`bash" | |
| echo "podman pull setonix-registry.pawsey.org.au/${{ vars.SETONIXREG_USERNAME }}/${{ env.DOCKERFILE_NAME }}:${{ env.VERSION }}" | |
| echo "\`\`\`" | |
| echo "" | |
| fi | |
| if [ "${{ needs.PREPARE-job.outputs.setonixreg_available }}" = "true" ] && [ "${{ needs.PUSH-PUBLIC-job.result }}" = "success" ]; then | |
| echo "### Setonix Public Registry" | |
| echo "\`\`\`bash" | |
| echo "podman pull setonix-registry.pawsey.org.au/pawsey/${{ env.DOCKERFILE_NAME }}:${{ env.VERSION }}" | |
| echo "\`\`\`" | |
| echo "" | |
| fi | |
| if [ "${{ needs.PREPARE-job.outputs.dockerhub_available }}" = "true" ] && [ "${{ needs.PUSH-PUBLIC-job.result }}" = "success" ]; then | |
| echo "### Docker Hub" | |
| echo "\`\`\`bash" | |
| echo "docker pull ${{ vars.DOCKERHUB_USERNAME }}/${{ env.DOCKERFILE_NAME }}:${{ env.VERSION }}" | |
| echo "# or" | |
| echo "podman pull docker.io/${{ vars.DOCKERHUB_USERNAME }}/${{ env.DOCKERFILE_NAME }}:${{ env.VERSION }}" | |
| echo "\`\`\`" | |
| echo "" | |
| fi | |
| if [ "${{ needs.PREPARE-job.outputs.quayio_available }}" = "true" ] && [ "${{ needs.PUSH-PUBLIC-job.result }}" = "success" ]; then | |
| echo "### Quay.io" | |
| echo "\`\`\`bash" | |
| echo "podman pull quay.io/${{ vars.QUAYIO_USERNAME }}/${{ env.DOCKERFILE_NAME }}:${{ env.VERSION }}" | |
| echo "\`\`\`" | |
| echo "" | |
| fi | |
| echo "## 📊 Job Results" | |
| echo "" | |
| echo "| Job | Status |" | |
| echo "|-----|--------|" | |
| echo "| PREPARE | ${{ needs.PREPARE-job.result == 'success' && '✅ Success' || '❌ Failed' }} |" | |
| echo "| BUILD | ${{ needs.BUILD-job.result == 'success' && '✅ Success' || '❌ Failed' }} |" | |
| echo "| SCAN-AND-REPORT | ${{ needs['SCAN-AND-REPORT-job'].result == 'success' && '✅ Success' || (needs['SCAN-AND-REPORT-job'].result == 'skipped' && '⏭️ Skipped') || '❌ Failed' }} |" | |
| echo "| PUSH-PRIV | ${{ needs.PUSH-PRIV-job.result == 'success' && '✅ Success' || '❌ Failed' }} |" | |
| echo "| PUSH-PUBLIC | ${{ needs.PUSH-PUBLIC-job.result == 'success' && '✅ Success' || '❌ Failed' }} |" | |
| } >> "$GITHUB_STEP_SUMMARY" | |
| # CLEANUP-job: | |
| # needs: [APPROVE-PUSH-PUB-job,PUSH-PRIV-job, SCAN-AND-REPORT-job, BUILD-job, PREPARE-job] | |
| # if: always() | |
| # runs-on: ${{ needs.PREPARE-job.outputs.runner_label }} | |
| # steps: | |
| # - name: Clean-up | |
| # run: | | |
| # sudo rm -rf $HOME/runner/artifacts/${{ needs.PREPARE-job.outputs.dockerfile_name }}-${{ needs.PREPARE-job.outputs.platform_tag }} | |
| # DEPLOY-job: | |
| # needs: [PUSH-PRIV-job,PREPARE-job] | |
| # runs-on: Ella | |
| # if: needs.PREPARE-job.outputs.platform_tag == 'arm' | |
| # env: | |
| # BUCKET: ${{ vars.ACACIA_BUCKETNAME }} # BYO or pawsey0001-image-compilation if compile for project | |
| # DESTINATION_PATH: ${{ needs.PREPARE-job.outputs.dockerfile_name }}-${{ needs.PREPARE-job.outputs.platform_tag }}/${{ needs.PREPARE-job.outputs.date }} | |
| # #environment: | |
| # # name: manual_approval | |
| # steps: | |
| # - name: Checkout repository | |
| # uses: actions/checkout@v4 | |
| # with: | |
| # fetch-depth: 1 # As the runs-on machine maybe different from Build, re-checkout source code. Only the current commit is needed | |
| # - name: Setup rclone | |
| # uses: ./.github/actions/setup-rclone | |
| # with: | |
| # access_key_id: ${{ secrets.ACACIA_ACCESS_KEY_ID }} | |
| # secret_access_key: ${{ secrets.ACACIA_SECRET_ACCESS_KEY }} | |
| # endpoint: https://projects.pawsey.org.au | |
| # bucket: ${{ env.BUCKET }} | |
| # destination_path: ${{ env.DESTINATION_PATH }} | |
| # - name: Deploy ARM image to Ella | |
| # run: | | |
| # echo "Deploying ARM image to Ella" | |
| # echo "Hostname: $(hostname)" | |
| # echo "Deploying image: ${{ needs.PREPARE-job.outputs.dockerfile_name }}-${{ needs.PREPARE-job.outputs.platform_tag }}:${{ needs.PREPARE-job.outputs.date }}" to Ella | |
| # mkdir -p $MYSCRATCH/image/${{ needs.PREPARE-job.outputs.dockerfile_name }}/ | |
| # rclone copy pawsey0001:"${{ env.BUCKET }}/${{ env.DESTINATION_PATH }}/image.tar" $MYSCRATCH/image/${{ needs.PREPARE-job.outputs.dockerfile_name }}/ | |
| # - name: Convert to Singularity File | |
| # run: | | |
| # echo "Converting to Singularity File" | |
| # echo "Converting image: ${{ needs.PREPARE-job.outputs.dockerfile_name }}-${{ needs.PREPARE-job.outputs.platform_tag }}:${{ needs.PREPARE-job.outputs.date }}" to Singularity | |
| # source ~/.bashrc | |
| # singularity build --force $MYSCRATCH/image/${{ needs.PREPARE-job.outputs.dockerfile_name }}/${{ needs.PREPARE-job.outputs.dockerfile_name }}-${{ needs.PREPARE-job.outputs.platform_tag }}.sif docker-archive://$MYSCRATCH/image/${{ needs.PREPARE-job.outputs.dockerfile_name }}/image.tar | |