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Update Python in CI #1764

Update Python in CI

Update Python in CI #1764

Triggered via pull request December 18, 2025 08:19
Status Failure
Total duration 1m 48s
Artifacts

pytest.yml

on: pull_request
Matrix: test
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44 errors and 13 warnings
Test ubuntu-latest-3.14-obabel-all
The process '/home/runner/miniconda3/condabin/mamba' failed with exit code 1
Test macos-latest-3.12-rdkit-all
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test macos-latest-3.11-rdkit-all
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test macos-latest-3.14-obabel-all
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test ubuntu-latest-3.11-rdkit-all
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test ubuntu-latest-3.11-rdkit-all
The operation was canceled.
Test ubuntu-latest-3.12-obabel-all
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test ubuntu-latest-3.12-obabel-all
The operation was canceled.
Test ubuntu-latest-3.14-rdkit-all
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test ubuntu-latest-3.14-rdkit-all
The operation was canceled.
Test ubuntu-latest-3.11-obabel-all
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test ubuntu-latest-3.11-obabel-all
The operation was canceled.
Test ubuntu-latest-3.13-obabel-all
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test ubuntu-latest-3.13-obabel-all
The operation was canceled.
Test macos-latest-3.12-obabel-all
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test macos-latest-3.12-obabel-all
The operation was canceled.
Test macos-latest-3.14-rdkit-all
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test macos-latest-3.14-rdkit-all
The operation was canceled.
Test macos-latest-3.13-obabel-all
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test macos-latest-3.13-obabel-all
The operation was canceled.
Test windows-latest-3.14-rdkit-nogt
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test windows-latest-3.14-rdkit-nogt
The operation was canceled.
Test windows-latest-3.13-rdkit-nogt
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test windows-latest-3.13-rdkit-nogt
The operation was canceled.
Test windows-latest-3.13-obabel-nogt
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test windows-latest-3.13-obabel-nogt
The operation was canceled.
Test windows-latest-3.11-obabel-nogt
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test windows-latest-3.11-obabel-nogt
The operation was canceled.
Test windows-latest-3.12-rdkit-nogt
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test windows-latest-3.12-rdkit-nogt
The operation was canceled.
Test windows-latest-3.11-rdkit-nogt
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test windows-latest-3.11-rdkit-nogt
The operation was canceled.
Test windows-latest-3.12-obabel-nogt
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test windows-latest-3.12-obabel-nogt
The operation was canceled.
Test ubuntu-latest-3.13-rdkit-all
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test ubuntu-latest-3.13-rdkit-all
A task was canceled.
Test windows-latest-3.14-obabel-nogt
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test windows-latest-3.14-obabel-nogt
The operation was canceled.
Test macos-latest-3.13-rdkit-all
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test macos-latest-3.13-rdkit-all
A task was canceled.
Test ubuntu-latest-3.12-rdkit-all
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test ubuntu-latest-3.12-rdkit-all
The request was canceled due to the configured HttpClient.Timeout of 100 seconds elapsing.
Test macos-latest-3.11-obabel-all
The strategy configuration was canceled because "test.ubuntu-latest_3_14_obabel" failed
Test macos-latest-3.11-obabel-all
A task was canceled.
Test ubuntu-latest-3.14-obabel-all
critical libmamba Could not solve for environment specs
Test ubuntu-latest-3.14-obabel-all
error libmamba Could not solve for environment specs The following packages are incompatible β”œβ”€ graph-tool =* * is installable with the potential options β”‚ β”œβ”€ graph-tool [2.44|2.45|...|2.98] would require β”‚ β”‚ └─ python_abi =3.10 *_cp310, which can be installed; β”‚ β”œβ”€ graph-tool [2.45|2.46|...|2.98] would require β”‚ β”‚ └─ python_abi =3.11 *_cp311, which can be installed; β”‚ β”œβ”€ graph-tool [2.29|2.30|...|2.77] would require β”‚ β”‚ └─ python_abi =3.8 *_cp38, which can be installed; β”‚ β”œβ”€ graph-tool [2.35|2.37|...|2.97] would require β”‚ β”‚ └─ python_abi =3.9 *_cp39, which can be installed; β”‚ β”œβ”€ graph-tool [2.58|2.59|...|2.98] would require β”‚ β”‚ └─ python_abi =3.12 *_cp312, which can be installed; β”‚ β”œβ”€ graph-tool [2.68|2.69|...|2.98] would require β”‚ β”‚ └─ graph-tool-base [==2.68 py310h0426dbd_1301|==2.68 py310h0bbe0f5_1401|...|==2.98 py314he2ce303_401], which requires β”‚ β”‚ └─ _x86_64-microarch-level [=4 *|>=4 *] but there are no viable options β”‚ β”‚ β”œβ”€ _x86_64-microarch-level 4 would require β”‚ β”‚ β”‚ └─ __archspec ==1 cascadelake, which is missing on the system; β”‚ β”‚ β”œβ”€ _x86_64-microarch-level 4 would require β”‚ β”‚ β”‚ └─ __archspec ==1 icelake, which is missing on the system; β”‚ β”‚ β”œβ”€ _x86_64-microarch-level 4 would require β”‚ β”‚ β”‚ └─ __archspec ==1 skylake_avx512, which is missing on the system; β”‚ β”‚ β”œβ”€ _x86_64-microarch-level 4 would require β”‚ β”‚ β”‚ └─ __archspec ==1 x86_64_v4, which is missing on the system; β”‚ β”‚ β”œβ”€ _x86_64-microarch-level 4 would require β”‚ β”‚ β”‚ └─ __archspec ==1 zen4, which is missing on the system; β”‚ β”‚ β”œβ”€ _x86_64-microarch-level 4 would require β”‚ β”‚ β”‚ └─ __archspec ==1 sapphirerapids, which is missing on the system; β”‚ β”‚ β”œβ”€ _x86_64-microarch-level 4 would require β”‚ β”‚ β”‚ └─ __archspec ==1 zen5, which is missing on the system; β”‚ β”‚ β”œβ”€ _x86_64-microarch-level 4 would require β”‚ β”‚ β”‚ └─ __archspec =1 cascadelake, which is missing on the system; β”‚ β”‚ β”œβ”€ _x86_64-microarch-level 4 would require β”‚ β”‚ β”‚ └─ __archspec =1 icelake, which is missing on the system; β”‚ β”‚ β”œβ”€ _x86_64-microarch-level 4 would require β”‚ β”‚ β”‚ └─ __archspec =1 sapphirerapids, which is missing on the system; β”‚ β”‚ β”œβ”€ _x86_64-microarch-level 4 would require β”‚ β”‚ β”‚ └─ __archspec =1 skylake_avx512, which is missing on the system; β”‚ β”‚ β”œβ”€ _x86_64-microarch-level 4 would require β”‚ β”‚ β”‚ └─ __archspec =1 x86_64_v4, which is missing on the system; β”‚ β”‚ β”œβ”€ _x86_64-microarch-level 4 would require β”‚ β”‚ β”‚ └─ __archspec =1 zen4, which is missing on the system; β”‚ β”‚ └─ _x86_64-microarch-level 4 would require β”‚ β”‚ └─ __archspec =1 zen5, which is missing on the system; β”‚ β”œβ”€ graph-tool [2.84|2.85|...|2.98] would require β”‚ β”‚ β”œβ”€ graph-tool-base ==2.98 py313h5a3f8bc_301, which requires β”‚ β”‚ β”‚ └─ python_abi =3.13 *_cp313, which can be installed; β”‚ β”‚ └─ python_abi =3.13 *_cp313, which can be installed; β”‚ β”œβ”€ graph-tool 2.98 would require β”‚ β”‚ └─ python_abi =3.14 *_cp314, which requires β”‚ β”‚ └─ python =3.14 *_cp314, which can be installed; β”‚ β”œβ”€ graph-tool 2.29 conflicts with any installable versions previously reported; β”‚ β”œβ”€ graph-tool 2.29 would require β”‚ β”‚ └─ python_abi =2.7 *_cp27mu, which can be installed; β”‚ β”œβ”€ graph-tool [2.29|2.30|...|2.43] would require β”‚ β”‚ └─ python_abi =3.6 *_cp36m, whi
Test ubuntu-latest-3.14-obabel-all
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
Test ubuntu-latest-3.11-rdkit-all
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
Test ubuntu-latest-3.12-obabel-all
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
Test ubuntu-latest-3.14-rdkit-all
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
Test ubuntu-latest-3.11-obabel-all
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
Test ubuntu-latest-3.13-obabel-all
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
Test macos-latest-3.12-obabel-all
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
Test macos-latest-3.14-rdkit-all
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
Test macos-latest-3.13-obabel-all
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
Test macos-latest-3.11-obabel-all
Back off 23.87 seconds before retry.
Test macos-latest-3.11-obabel-all
Failed to download action 'https://api.github.com/repos/actions/github-script/tarball/60a0d83039c74a4aee543508d2ffcb1c3799cdea'. Error: Operation timed out (api.github.com:443)