Update NEWS.md with v1.0.0 changelog entries #4
Annotations
34 errors and 15 warnings
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Packages suggested but not available: 'XGR', 'haploR'
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Error: connect ECONNREFUSED 127.0.0.1:7777
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[Workflow Telemetry] Unable to finish stat collector
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AxiosError: Request failed with status code 403
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macOS-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Memory Usage (MB)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"Used","color":"#377eb899","points":[{"x":1773437192353,"y":2997.921875},{"x":1773437197354,"y":2936.9375},{"x":1773437202352,"y":2948.25},{"x":1773437207353,"y":2952.171875},{"x":1773437212352,"y":2923.53125},{"x":1773437217351,"y":2834.484375},{"x":1773437222351,"y":2823.03125},{"x":1773437227351,"y":2841.5},{"x":1773437232352,"y":2836.140625},{"x":1773437237351,"y":2932.234375},{"x":1773437242352,"y":2624.828125},{"x":1773437247351,"y":2793.53125},{"x":1773437252352,"y":2887.84375},{"x":1773437257351,"y":2911.5},{"x":1773437262352,"y":1446.859375},{"x":1773437267356,"y":1690.265625},{"x":1773437272351,"y":1776.71875},{"x":1773437277351,"y":2046.125},{"x":1773437282353,"y":2114.859375},{"x":1773437287353,"y":2112.640625},{"x":1773437292354,"y":2095.734375},{"x":1773437297368,"y":2018.21875},{"x":1773437302357,"y":2254.421875},{"x":1773437307355,"y":2389.203125},{"x":1773437312352,"y":2416.953125},{"x":1773437317352,"y":2417.6875},{"x":1773437322351,"y":2452.90625},{"x":1773437327354,"y":2451.1875},{"x":1773437332351,"y":2432.5625},{"x":1773437337352,"y":2384.1875},{"x":1773437342354,"y":2379.3125},{"x":1773437347353,"y":1693.421875},{"x":1773437352356,"y":1743.140625},{"x":1773437357353,"y":1777.5625},{"x":1773437362352,"y":1783.5},{"x":1773437367353,"y":1861.875},{"x":1773437372351,"y":1956.484375},{"x":1773437377352,"y":2013.953125},{"x":1773437382354,"y":2040.015625},{"x":1773437387352,"y":2080.953125},{"x":1773437392352,"y":2171.078125},{"x":1773437397352,"y":2136.578125},{"x":1773437402352,"y":2195.15625},{"x":1773437407353,"y":2185.921875},{"x":1773437412352,"y":2210.75},{"x":1773437417353,"y":2319.0625},{"x":1773437422354,"y":2343.765625},{"x":1773437427351,"y":2350.25},{"x":1773437432350,"y":2391.921875},{"x":1773437437352,"y":2436.390625},{"x":1773437442354,"y":2491.109375},{"x":1773437447352,"y":2528.796875},{"x":1773437452352,"y":2598.046875},{"x":1773437457352,"y":2613.15625},{"x":1773437462354,"y":2668.9375},{"x":1773437467353,"y":2684.125},{"x":1773437472352,"y":2437.015625},{"x":1773437477352,"y":2439.625},{"x":1773437482351,"y":2453.859375},{"x":1773437487355,"y":2465.5625},{"x":1773437492353,"y":2472.328125},{"x":1773437497353,"y":2476.0625},{"x":1773437502351,"y":2464.6875},{"x":1773437507352,"y":2403.234375},{"x":1773437512352,"y":2415.296875},{"x":1773437517351,"y":2427.25},{"x":1773437522351,"y":2434.84375},{"x":1773437527351,"y":2422.421875},{"x":1773437532357,"y":2422.671875},{"x":1773437537352,"y":2420.03125},{"x":1773437542352,"y":2396.46875},{"x":1773437547351,"y":2395.546875},{"x":1773437552352,"y":2376.8125},{"x":1773437557353,"y":2072.484375},{"x":1773437562352,"y":2113.484375},{"x":1773437567351,"y":2117.0625},{"x":1773437572353,"y":2116.515625},{"x":1773437577351,"y":2126.890625},{"x":1773437582351,"y":2121.296875},{"x":1773437587352,"y":2123.34375},{"x":1773437592352,"y":2123.59375},{"x":1773437597351,"y":2129.921875},{"x":1773437602352,"y":2133.109375},{"x":1773437607353,"y":2079.140625},{"x":1773437612353,"y":1852.984375},{"x":1773437617351,"y":2110.25},{"x":1773437622352,"y":2274.625},{"x":1773437627353,"y":2315.328125},{"x":1773437632351,"y":2429.953125},{"x":1773437637357,"y":2412.265625},{"x":1773437642359,"y":2483.828125},{"x":1773437647354,"y":2423.1875},{"x":1773437652352,"y":2586.71875},{"x":1773437657352,"y":2530.375},{"x":1773437662352,"y":2592.515625},{"x":1773437667352,"y":2557.78125},{"x":1773437672350,"y":2645.109375},{"x":1773437677354,"y":2595.125},{"x":1773437682353,"y":2454.078125}]},{"label":"Free","color":"#4daf4a99","points":[{"x":1773437192353,"y":4170.078125},{"x":1773437197354,"y":4231.0625},{"x":1773437202352,"y":4219.75},{"x":1773437207353,"y":4215.828125},{"x":1773437212352,"y":4244.46875},{"x":1773437217351,"y":4333.515625},{"x":1773437222351,"y":4344.96875},{"x":1773437227351,"y":4326.5},{"x":1773437232352,"y":4331.859375},{"x":1773437237351,"y":4235.765625},{"x":17734372
|
|
macOS-latest (auto)
AxiosError: Request failed with status code 403
|
|
macOS-latest (auto)
[Workflow Telemetry] AxiosError
|
|
macOS-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"CPU Load (%)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"User Load","color":"#e41a1c99","points":[{"x":1773437192353,"y":31.840071123404044},{"x":1773437197354,"y":39.8936170212766},{"x":1773437202352,"y":37.21552878179384},{"x":1773437207353,"y":32.506702412868634},{"x":1773437212352,"y":36.87374749498998},{"x":1773437217351,"y":48.03202134756505},{"x":1773437222351,"y":53.67156208277704},{"x":1773437227351,"y":59.47930574098799},{"x":1773437232352,"y":56.00801068090788},{"x":1773437237351,"y":34.91005996002665},{"x":1773437242352,"y":27.946127946127948},{"x":1773437247351,"y":35.537742150968604},{"x":1773437252352,"y":36.86666666666667},{"x":1773437257351,"y":45.90273151232512},{"x":1773437262352,"y":42.86671131949096},{"x":1773437267356,"y":38.22548365577052},{"x":1773437272351,"y":47.762191048764194},{"x":1773437277351,"y":51.86915887850467},{"x":1773437282353,"y":42.904730179880076},{"x":1773437287353,"y":42.44843646041251},{"x":1773437292354,"y":48.057932850559574},{"x":1773437297368,"y":47.158322056833555},{"x":1773437302357,"y":32.021347565043364},{"x":1773437307355,"y":25.68745808182428},{"x":1773437312352,"y":23.806321452589106},{"x":1773437317352,"y":16.409912926992632},{"x":1773437322351,"y":21.35728542914172},{"x":1773437327354,"y":22.19215155615697},{"x":1773437332351,"y":18.879252835223483},{"x":1773437337352,"y":21.476510067114095},{"x":1773437342354,"y":23.50971198928332},{"x":1773437347353,"y":14.401076716016151},{"x":1773437352356,"y":16.6},{"x":1773437357353,"y":45.010046885465506},{"x":1773437362352,"y":18.754186202277296},{"x":1773437367353,"y":15.852842809364548},{"x":1773437372351,"y":27.55852842809365},{"x":1773437377352,"y":52.26666666666666},{"x":1773437382354,"y":62.242866622428664},{"x":1773437387352,"y":42.648037258815705},{"x":1773437392352,"y":37.65182186234818},{"x":1773437397352,"y":57.85997357992074},{"x":1773437402352,"y":50.74424898511503},{"x":1773437407353,"y":56.29973474801061},{"x":1773437412352,"y":59.73154362416108},{"x":1773437417353,"y":57.25699067909454},{"x":1773437422354,"y":28.37022132796781},{"x":1773437427351,"y":15.327978580990628},{"x":1773437432350,"y":33.178500331785},{"x":1773437437352,"y":51.30784708249497},{"x":1773437442354,"y":49.73262032085562},{"x":1773437447352,"y":38.00935203740815},{"x":1773437452352,"y":15.81769436997319},{"x":1773437457352,"y":12.382234185733513},{"x":1773437462354,"y":11.281708945260348},{"x":1773437467353,"y":12.348993288590604},{"x":1773437472352,"y":7.718120805369128},{"x":1773437477352,"y":8.25503355704698},{"x":1773437482351,"y":6.572769953051644},{"x":1773437487355,"y":9.919571045576408},{"x":1773437492353,"y":9.25553319919517},{"x":1773437497353,"y":11.342281879194632},{"x":1773437502351,"y":11.823647294589177},{"x":1773437507352,"y":10.7095046854083},{"x":1773437512352,"y":6.178643384822028},{"x":1773437517351,"y":7.30563002680965},{"x":1773437522351,"y":8.02675585284281},{"x":1773437527351,"y":11.388140161725067},{"x":1773437532357,"y":8.366800535475234},{"x":1773437537352,"y":5.540720961281709},{"x":1773437542352,"y":8.739837398373984},{"x":1773437547351,"y":5.874499332443257},{"x":1773437552352,"y":9.664429530201343},{"x":1773437557353,"y":9.899665551839465},{"x":1773437562352,"y":20.187793427230048},{"x":1773437567351,"y":7.511737089201878},{"x":1773437572353,"y":8.327736736064473},{"x":1773437577351,"y":8.417508417508419},{"x":1773437582351,"y":7.702612190221031},{"x":1773437587352,"y":9.01803607214429},{"x":1773437592352,"y":7.422402159244265},{"x":1773437597351,"y":14.189643577673166},{"x":1773437602352,"y":7.4916387959866215},{"x":1773437607353,"y":13.06970509383378},{"x":1773437612353,"y":19.559412550066757},{"x":1773437617351,"y":33.82352941176471},{"x":1773437622352,"y":28.772635814889334},{"x":1773437627353,"y":24.8993288590604},{"x":1773437632351,"y":31.41326188881447},{"x":1773437637357,"y":50.50167224080268},{"x":1773437642359,"y":51.92563081009296},{"x":1773437647354,"y":41.56018829858776
|
|
macOS-latest (auto)
AxiosError: Request failed with status code 403
|
|
macOS-latest (auto)
[Workflow Telemetry] AxiosError
|
|
macOS-latest (auto)
Process completed with exit code 1.
|
|
macOS-latest (auto)
Failed to install 'echoannot' from local:
|
|
macOS-latest (auto)
Process completed with exit code 1.
|
|
macOS-latest (auto)
Failed to install 'echoannot' from local:
|
|
windows-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh37'
|
|
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh37'
|
|
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh37'
|
|
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh38'
|
|
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh38'
|
|
windows-latest (auto)
replacing previous import 'utils::findMatches' by 'S4Vectors::findMatches' when loading 'SNPlocs.Hsapiens.dbSNP144.GRCh38'
|
|
windows-latest (auto)
file 'echoconda/configure' did not have execute permissions: corrected
|
|
windows-latest (auto)
dependencies 'BiocVersion', 'BiocStyle' are not available
|
|
ubuntu-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
macOS-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
macOS-latest (auto)
No files were found with the provided path: check. No artifacts will be uploaded.
|
|
macOS-latest (auto)
dependencies ‘BiocVersion’, ‘BiocStyle’ are not available
|
|
macOS-latest (auto)
fribidi 1.0.16 is already installed and up-to-date.
To reinstall 1.0.16, run:
brew reinstall fribidi
|
|
macOS-latest (auto)
harfbuzz 12.3.2 is already installed and up-to-date.
To reinstall 12.3.2, run:
brew reinstall harfbuzz
|
Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
|
Linux-biocversion-devel-r-auto-results
|
4.26 MB |
sha256:2c10806cef4bb924f867f0c8a0ecbadc498ba4a07f5cbf3a193ba3673a6db78b
|
|
|
Windows-biocversion-release-r-auto-results
|
4.3 MB |
sha256:cb2df366b390494117e69aa0aad7e2f0cedecf506dd3f34bc191c305ad290a2d
|
|