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Enable Miniforge in GHA, wrap conda checks in tryCatch #5

Enable Miniforge in GHA, wrap conda checks in tryCatch

Enable Miniforge in GHA, wrap conda checks in tryCatch #5

Triggered via push March 14, 2026 16:43
Status Failure
Total duration 33m 49s
Artifacts 3

rworkflows.yml

on: push
Matrix: rworkflows
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[Workflow Telemetry] AxiosError
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[Workflow Telemetry] getLineGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Network I/O Read (MB)"},"timeTicks":{"unit":"auto"}},"lines":[{"label":"Read","color":"#be4d25","points":[{"x":1773507174955,"y":0},{"x":1773507179955,"y":65},{"x":1773507184954,"y":0},{"x":1773507189953,"y":251},{"x":1773507194959,"y":47},{"x":1773507199953,"y":0},{"x":1773507204955,"y":69},{"x":1773507209954,"y":0},{"x":1773507214954,"y":0},{"x":1773507219953,"y":0},{"x":1773507224954,"y":0},{"x":1773507229953,"y":101},{"x":1773507234954,"y":1},{"x":1773507239954,"y":22},{"x":1773507244954,"y":0},{"x":1773507249954,"y":9},{"x":1773507254954,"y":1},{"x":1773507259953,"y":0},{"x":1773507264953,"y":14},{"x":1773507269953,"y":59},{"x":1773507274954,"y":114},{"x":1773507279954,"y":214},{"x":1773507284954,"y":492},{"x":1773507289954,"y":961},{"x":1773507294956,"y":295},{"x":1773507299954,"y":0},{"x":1773507304956,"y":0},{"x":1773507309954,"y":0},{"x":1773507314954,"y":0},{"x":1773507319954,"y":0},{"x":1773507324953,"y":0},{"x":1773507329954,"y":0},{"x":1773507334954,"y":0},{"x":1773507339953,"y":0},{"x":1773507344953,"y":0},{"x":1773507349953,"y":1},{"x":1773507354955,"y":2},{"x":1773507359954,"y":4},{"x":1773507364954,"y":7},{"x":1773507369954,"y":0},{"x":1773507374955,"y":0},{"x":1773507379955,"y":0},{"x":1773507384954,"y":0},{"x":1773507389953,"y":0},{"x":1773507394955,"y":0},{"x":1773507399954,"y":0},{"x":1773507404953,"y":0},{"x":1773507409955,"y":0},{"x":1773507414954,"y":0},{"x":1773507419955,"y":0},{"x":1773507424953,"y":0},{"x":1773507429954,"y":0},{"x":1773507434952,"y":0},{"x":1773507439957,"y":0},{"x":1773507444955,"y":2},{"x":1773507449955,"y":0},{"x":1773507454957,"y":0},{"x":1773507459956,"y":0},{"x":1773507464953,"y":0},{"x":1773507469955,"y":0},{"x":1773507474955,"y":0},{"x":1773507479955,"y":0},{"x":1773507484959,"y":0},{"x":1773507489957,"y":0},{"x":1773507494955,"y":0},{"x":1773507499958,"y":108},{"x":1773507504955,"y":0},{"x":1773507509956,"y":0},{"x":1773507514955,"y":0},{"x":1773507519954,"y":4},{"x":1773507524953,"y":80},{"x":1773507529955,"y":0},{"x":1773507534955,"y":126},{"x":1773507539954,"y":10},{"x":1773507544954,"y":0},{"x":1773507549954,"y":0},{"x":1773507554954,"y":0},{"x":1773507559956,"y":3},{"x":1773507564955,"y":0},{"x":1773507569956,"y":0},{"x":1773507574955,"y":0},{"x":1773507579962,"y":0},{"x":1773507584957,"y":0},{"x":1773507589954,"y":0},{"x":1773507594954,"y":10},{"x":1773507599956,"y":0},{"x":1773507604956,"y":0},{"x":1773507609954,"y":0},{"x":1773507614955,"y":0},{"x":1773507619955,"y":2},{"x":1773507624955,"y":55},{"x":1773507629956,"y":0},{"x":1773507634955,"y":0},{"x":1773507639954,"y":0},{"x":1773507644955,"y":0},{"x":1773507649957,"y":0},{"x":1773507654955,"y":28},{"x":1773507659956,"y":19},{"x":1773507664955,"y":186},{"x":1773507669955,"y":21},{"x":1773507674955,"y":0},{"x":1773507679955,"y":0},{"x":1773507684954,"y":0},{"x":1773507689955,"y":0},{"x":1773507694955,"y":0},{"x":1773507699955,"y":0},{"x":1773507704954,"y":0},{"x":1773507709960,"y":0},{"x":1773507714955,"y":0},{"x":1773507719954,"y":0},{"x":1773507724956,"y":0},{"x":1773507729954,"y":0},{"x":1773507734955,"y":1},{"x":1773507739954,"y":0},{"x":1773507744957,"y":0},{"x":1773507749955,"y":0},{"x":1773507754955,"y":0},{"x":1773507759954,"y":0},{"x":1773507764954,"y":0},{"x":1773507769956,"y":0},{"x":1773507774954,"y":0},{"x":1773507779955,"y":0},{"x":1773507784954,"y":0},{"x":1773507789954,"y":0},{"x":1773507794953,"y":0},{"x":1773507799953,"y":0},{"x":1773507804953,"y":0},{"x":1773507809951,"y":0},{"x":1773507814954,"y":0},{"x":1773507819951,"y":0},{"x":1773507824950,"y":0},{"x":1773507829952,"y":0},{"x":1773507834953,"y":0},{"x":1773507839952,"y":0},{"x":1773507844952,"y":0},{"x":1773507849952,"y":0},{"x":1773507854953,"y":0},{"x":1773507859952,"y":0},{"x":1773507864951,"y":0},{"x":1773507869953,"y":0},{"x":1773507874962,"y":0},{"x":1773507879953,"y":0},{"x":1773507884953,"y":0},{"x":1773507889952,"y":0},{"x":1773507894953,"y":0},{"x":1773507899952,"y":0},{"x":1773507904953,"y":0},{"x":1773507909953,"
macOS-latest (auto)
AxiosError: Request failed with status code 403
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Memory Usage (MB)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"Used","color":"#377eb899","points":[{"x":1773507174955,"y":3107.875},{"x":1773507179955,"y":3101},{"x":1773507184954,"y":3025.734375},{"x":1773507189953,"y":3090.875},{"x":1773507194959,"y":3092.71875},{"x":1773507199953,"y":3084.4375},{"x":1773507204955,"y":3034.9375},{"x":1773507209954,"y":2888.375},{"x":1773507214954,"y":2989.609375},{"x":1773507219953,"y":2898.96875},{"x":1773507224954,"y":2945.984375},{"x":1773507229953,"y":2684.4375},{"x":1773507234954,"y":2787.34375},{"x":1773507239954,"y":2986.875},{"x":1773507244954,"y":2945.53125},{"x":1773507249954,"y":1573.09375},{"x":1773507254954,"y":1874.984375},{"x":1773507259953,"y":2105.03125},{"x":1773507264953,"y":2338.15625},{"x":1773507269953,"y":2278.390625},{"x":1773507274954,"y":2359.1875},{"x":1773507279954,"y":2348.4375},{"x":1773507284954,"y":2317.5},{"x":1773507289954,"y":2332.015625},{"x":1773507294956,"y":2918.015625},{"x":1773507299954,"y":2913.3125},{"x":1773507304956,"y":2912.765625},{"x":1773507309954,"y":2904.609375},{"x":1773507314954,"y":2910.203125},{"x":1773507319954,"y":2802.140625},{"x":1773507324953,"y":2800.28125},{"x":1773507329954,"y":1637.796875},{"x":1773507334954,"y":1740.046875},{"x":1773507339953,"y":1759.3125},{"x":1773507344953,"y":1919.8125},{"x":1773507349953,"y":1806.140625},{"x":1773507354955,"y":1840.765625},{"x":1773507359954,"y":2056.359375},{"x":1773507364954,"y":2008.53125},{"x":1773507369954,"y":2062.140625},{"x":1773507374955,"y":2059.75},{"x":1773507379955,"y":2073.234375},{"x":1773507384954,"y":2062.53125},{"x":1773507389953,"y":2070.40625},{"x":1773507394955,"y":2159.78125},{"x":1773507399954,"y":2148.0625},{"x":1773507404953,"y":2160.671875},{"x":1773507409955,"y":2140.890625},{"x":1773507414954,"y":2165.109375},{"x":1773507419955,"y":2171.125},{"x":1773507424953,"y":2277.171875},{"x":1773507429954,"y":2360.296875},{"x":1773507434952,"y":2423.203125},{"x":1773507439957,"y":2427.53125},{"x":1773507444955,"y":2429.40625},{"x":1773507449955,"y":2457.859375},{"x":1773507454957,"y":2492.421875},{"x":1773507459956,"y":2494.015625},{"x":1773507464953,"y":2145.265625},{"x":1773507469955,"y":2239.328125},{"x":1773507474955,"y":2244.1875},{"x":1773507479955,"y":2262.4375},{"x":1773507484959,"y":2268.921875},{"x":1773507489957,"y":2271.765625},{"x":1773507494955,"y":2218.28125},{"x":1773507499958,"y":1987.375},{"x":1773507504955,"y":2303.4375},{"x":1773507509956,"y":2473.4375},{"x":1773507514955,"y":2626.78125},{"x":1773507519954,"y":2646.8125},{"x":1773507524953,"y":2737.6875},{"x":1773507529955,"y":2776.515625},{"x":1773507534955,"y":2805.234375},{"x":1773507539954,"y":2802.40625},{"x":1773507544954,"y":2818.59375},{"x":1773507549954,"y":2869.3125},{"x":1773507554954,"y":2922.421875},{"x":1773507559956,"y":2825.421875},{"x":1773507564955,"y":2915.828125},{"x":1773507569956,"y":2493.875},{"x":1773507574955,"y":2840.1875},{"x":1773507579962,"y":2897.59375},{"x":1773507584957,"y":2375.25},{"x":1773507589954,"y":2631.21875},{"x":1773507594954,"y":2494.453125},{"x":1773507599956,"y":2874.328125},{"x":1773507604956,"y":2540},{"x":1773507609954,"y":2496.625},{"x":1773507614955,"y":2878.96875},{"x":1773507619955,"y":2375.328125},{"x":1773507624955,"y":2599.5625},{"x":1773507629956,"y":2857.90625},{"x":1773507634955,"y":2197.734375},{"x":1773507639954,"y":2485.046875},{"x":1773507644955,"y":2388.546875},{"x":1773507649957,"y":2072},{"x":1773507654955,"y":2058.53125},{"x":1773507659956,"y":2075.265625},{"x":1773507664955,"y":2118.75},{"x":1773507669955,"y":2144.71875},{"x":1773507674955,"y":2841.875},{"x":1773507679955,"y":2172.53125},{"x":1773507684954,"y":2554.546875},{"x":1773507689955,"y":2401.84375},{"x":1773507694955,"y":2797.84375},{"x":1773507699955,"y":2409.515625},{"x":1773507704954,"y":2731.09375},{"x":1773507709960,"y":2371.40625},{"x":1773507714955,"y":2151.90625},{"x":1773507719954,"y":2511.296875},{"x":1773507724956,"y":2289.015625},{"x":
macOS-latest (auto)
AxiosError: Request failed with status code 403
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"CPU Load (%)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"User Load","color":"#e41a1c99","points":[{"x":1773507174955,"y":34.74748555531778},{"x":1773507179955,"y":29.175050301810867},{"x":1773507184954,"y":35.40414161656646},{"x":1773507189953,"y":26.586506346025384},{"x":1773507194959,"y":23.066577000672496},{"x":1773507199953,"y":15.631262525050099},{"x":1773507204955,"y":24.286662242866623},{"x":1773507209954,"y":28.744123572867696},{"x":1773507214954,"y":32.10702341137124},{"x":1773507219953,"y":35.086551264980024},{"x":1773507224954,"y":27.74798927613941},{"x":1773507229953,"y":32.35294117647059},{"x":1773507234954,"y":26.506024096385545},{"x":1773507239954,"y":23.533333333333335},{"x":1773507244954,"y":47.76815456362425},{"x":1773507249954,"y":30.82010582010582},{"x":1773507254954,"y":38.25321597833446},{"x":1773507259953,"y":29.191716766867064},{"x":1773507264953,"y":34.93333333333333},{"x":1773507269953,"y":29.144385026737968},{"x":1773507274954,"y":19.26666666666667},{"x":1773507279954,"y":11.808367071524966},{"x":1773507284954,"y":13.23529411764706},{"x":1773507289954,"y":26.737967914438503},{"x":1773507294956,"y":18.575233022636482},{"x":1773507299954,"y":16.48721399730821},{"x":1773507304956,"y":10.2803738317757},{"x":1773507309954,"y":12.30665770006725},{"x":1773507314954,"y":13.730743469524448},{"x":1773507319954,"y":13.58515573227303},{"x":1773507324953,"y":14.46923597025017},{"x":1773507329954,"y":10.324288550628722},{"x":1773507334954,"y":21.62162162162162},{"x":1773507339953,"y":19.55793703951775},{"x":1773507344953,"y":16.27751834556371},{"x":1773507349953,"y":32.26452905811623},{"x":1773507354955,"y":30.66132264529058},{"x":1773507359954,"y":35.91455273698264},{"x":1773507364954,"y":40.61456245824983},{"x":1773507369954,"y":36.490993995997336},{"x":1773507374955,"y":29.183400267737618},{"x":1773507379955,"y":21.672240802675585},{"x":1773507384954,"y":9.431438127090301},{"x":1773507389953,"y":38.31775700934579},{"x":1773507394955,"y":24.798927613941018},{"x":1773507399954,"y":9.194630872483222},{"x":1773507404953,"y":6.447280053727333},{"x":1773507409955,"y":8.456375838926174},{"x":1773507414954,"y":7.991940899932841},{"x":1773507419955,"y":6.384408602150538},{"x":1773507424953,"y":15.167785234899329},{"x":1773507429954,"y":15.076717811874582},{"x":1773507434952,"y":12.650602409638553},{"x":1773507439957,"y":7.046979865771812},{"x":1773507444955,"y":9.335124244459369},{"x":1773507449955,"y":6.854838709677419},{"x":1773507454957,"y":9.41492938802959},{"x":1773507459956,"y":9.328859060402685},{"x":1773507464953,"y":8.914209115281501},{"x":1773507469955,"y":19.86577181208054},{"x":1773507474955,"y":8.069939475453934},{"x":1773507479955,"y":11.626344086021504},{"x":1773507484959,"y":8.238446081714669},{"x":1773507489957,"y":7.526881720430108},{"x":1773507494955,"y":11.140939597315436},{"x":1773507499958,"y":17.14668452779638},{"x":1773507504955,"y":21.858288770053477},{"x":1773507509956,"y":26.32283991962492},{"x":1773507514955,"y":47.15719063545151},{"x":1773507519954,"y":48.832555036691126},{"x":1773507524953,"y":36.36363636363637},{"x":1773507529955,"y":63.660654642618574},{"x":1773507534955,"y":57.36175882744837},{"x":1773507539954,"y":23.04609218436874},{"x":1773507544954,"y":52.40320427236315},{"x":1773507549954,"y":60.01335113484646},{"x":1773507554954,"y":57.409879839786385},{"x":1773507559956,"y":46.32352941176471},{"x":1773507564955,"y":53.800000000000004},{"x":1773507569956,"y":48.498999332888594},{"x":1773507574955,"y":69.08727514990007},{"x":1773507579962,"y":75.90120160213618},{"x":1773507584957,"y":45.539906103286384},{"x":1773507589954,"y":55.58510638297872},{"x":1773507594954,"y":64.70194239785666},{"x":1773507599956,"y":74.11842980705256},{"x":1773507604956,"y":60.64042695130086},{"x":1773507609954,"y":78.38018741633199},{"x":1773507614955,"y":76.83089214380826},{"x":1773507619955,"y":75.70093457943925},{"x":1773507624955,"y":53.835890593729154},{"x":177350762995
macOS-latest (auto)
AxiosError: Request failed with status code 403
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
Process completed with exit code 1.
macOS-latest (auto)
R CMD check found ERRORs
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
[Workflow Telemetry] Unable to report stat collector result
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
[Workflow Telemetry] Unable to finish stat collector
windows-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2, conda-incubator/setup-miniconda@v3, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
windows-latest (auto)
Could not identify any conda_env matching existing conda environments.
windows-latest (auto)
Could not identify any conda_env matching existing conda environments.
windows-latest (auto)
Could not identify any conda_env matching existing conda environments.
windows-latest (auto)
Could not identify any conda_env matching existing conda environments.
windows-latest (auto)
file 'echoconda/configure' did not have execute permissions: corrected
windows-latest (auto)
dependencies 'BiocVersion', 'BiocStyle' are not available
windows-latest (auto)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
macOS-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2, conda-incubator/setup-miniconda@v3, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (auto)
Could not identify any conda_env matching existing conda environments.
macOS-latest (auto)
Could not identify any conda_env matching existing conda environments.
macOS-latest (auto)
Could not identify any conda_env matching existing conda environments.
macOS-latest (auto)
Could not identify any conda_env matching existing conda environments.
macOS-latest (auto)
dependencies ‘BiocVersion’, ‘BiocStyle’ are not available
macOS-latest (auto)
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
macOS-latest (auto)
harfbuzz 12.3.2 is already installed and up-to-date. To reinstall 12.3.2, run: brew reinstall harfbuzz
macOS-latest (auto)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
ubuntu-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, catchpoint/workflow-telemetry-action@v2, conda-incubator/setup-miniconda@v3, docker/build-push-action@v6, docker/login-action@v3, docker/setup-buildx-action@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
ubuntu-latest (auto)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.

Artifacts

Produced during runtime
Name Size Digest
RajLabMSSM~echofinemap~ZH271G.dockerbuild
115 KB
sha256:fb4b1fd52567f5bdbda7631185fde771529ce1447a133f3131d4bb00c3ad9363
Windows-biocversion-release-r-auto-results
1.46 MB
sha256:d0bad03c2b4296bef73e58166e116924582134e5fb95ea50059d211dd49abf90
macOS-biocversion-release-r-auto-results
1.46 MB
sha256:8f4e0a1667a20c76ad31f35595dbb1d7a0ab72b9e3d52b7d3edb02ea34479965