Add 27 test files for utility/data functions, coverage 41% -> ~55% #8
Annotations
13 errors and 10 warnings
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[Workflow Telemetry] getLineGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Network I/O Read (MB)"},"timeTicks":{"unit":"auto"}},"lines":[{"label":"Read","color":"#be4d25","points":[{"x":1773552084454,"y":0},{"x":1773552089451,"y":65},{"x":1773552094446,"y":0},{"x":1773552099448,"y":0},{"x":1773552104446,"y":300},{"x":1773552109446,"y":0},{"x":1773552114447,"y":0},{"x":1773552119446,"y":70},{"x":1773552124447,"y":0},{"x":1773552129447,"y":0},{"x":1773552134447,"y":0},{"x":1773552139446,"y":0},{"x":1773552144446,"y":102},{"x":1773552149446,"y":0},{"x":1773552154446,"y":24},{"x":1773552159449,"y":0},{"x":1773552164457,"y":0},{"x":1773552169446,"y":3},{"x":1773552174447,"y":0},{"x":1773552179446,"y":86},{"x":1773552184446,"y":338},{"x":1773552189448,"y":0},{"x":1773552194446,"y":15},{"x":1773552199446,"y":136},{"x":1773552204447,"y":824},{"x":1773552209447,"y":748},{"x":1773552214450,"y":431},{"x":1773552219447,"y":0},{"x":1773552224446,"y":0},{"x":1773552229448,"y":0},{"x":1773552234447,"y":0},{"x":1773552239446,"y":0},{"x":1773552244446,"y":0},{"x":1773552249446,"y":0},{"x":1773552254446,"y":0},{"x":1773552259446,"y":0},{"x":1773552264446,"y":0},{"x":1773552269446,"y":0},{"x":1773552274446,"y":0},{"x":1773552279444,"y":0},{"x":1773552284448,"y":0},{"x":1773552289446,"y":0},{"x":1773552294446,"y":0},{"x":1773552299446,"y":0},{"x":1773552304449,"y":0},{"x":1773552309447,"y":0},{"x":1773552314445,"y":0},{"x":1773552319446,"y":0},{"x":1773552324447,"y":0},{"x":1773552329449,"y":0},{"x":1773552334446,"y":0},{"x":1773552339447,"y":0},{"x":1773552344448,"y":0},{"x":1773552349447,"y":0},{"x":1773552354445,"y":0},{"x":1773552359447,"y":0},{"x":1773552364447,"y":0},{"x":1773552369447,"y":0},{"x":1773552374446,"y":0},{"x":1773552379446,"y":0},{"x":1773552384447,"y":0},{"x":1773552389446,"y":0},{"x":1773552394447,"y":0},{"x":1773552399445,"y":0},{"x":1773552404446,"y":0},{"x":1773552409447,"y":0},{"x":1773552414446,"y":0},{"x":1773552419447,"y":0},{"x":1773552424447,"y":0},{"x":1773552429449,"y":0},{"x":1773552434446,"y":0},{"x":1773552439447,"y":108},{"x":1773552444447,"y":0},{"x":1773552449448,"y":0},{"x":1773552454449,"y":0},{"x":1773552459447,"y":1},{"x":1773552464448,"y":5},{"x":1773552469446,"y":0},{"x":1773552474447,"y":0},{"x":1773552479446,"y":0},{"x":1773552484446,"y":0},{"x":1773552489445,"y":0},{"x":1773552494447,"y":0},{"x":1773552499446,"y":0},{"x":1773552504445,"y":1},{"x":1773552509448,"y":0},{"x":1773552514449,"y":0},{"x":1773552519449,"y":0},{"x":1773552524447,"y":0},{"x":1773552529446,"y":0},{"x":1773552534446,"y":0},{"x":1773552539448,"y":0},{"x":1773552544451,"y":0},{"x":1773552549446,"y":0},{"x":1773552554448,"y":0},{"x":1773552559446,"y":0},{"x":1773552564451,"y":0},{"x":1773552569446,"y":0},{"x":1773552574448,"y":0},{"x":1773552579446,"y":0},{"x":1773552584447,"y":0},{"x":1773552589447,"y":0},{"x":1773552594446,"y":0},{"x":1773552599449,"y":0},{"x":1773552604448,"y":0},{"x":1773552609447,"y":0},{"x":1773552614446,"y":0},{"x":1773552619449,"y":0},{"x":1773552624447,"y":0},{"x":1773552629452,"y":0},{"x":1773552634446,"y":0},{"x":1773552639447,"y":0},{"x":1773552644445,"y":0},{"x":1773552649447,"y":0},{"x":1773552654448,"y":0},{"x":1773552659446,"y":0},{"x":1773552664449,"y":0},{"x":1773552669448,"y":0},{"x":1773552674444,"y":0},{"x":1773552679449,"y":0},{"x":1773552684448,"y":0},{"x":1773552689449,"y":0},{"x":1773552694448,"y":3},{"x":1773552699451,"y":2},{"x":1773552704447,"y":0},{"x":1773552709449,"y":0},{"x":1773552714450,"y":0},{"x":1773552719448,"y":0},{"x":1773552724450,"y":0},{"x":1773552729448,"y":0},{"x":1773552734446,"y":0},{"x":1773552739444,"y":0},{"x":1773552744446,"y":0},{"x":1773552749447,"y":0},{"x":1773552754446,"y":0},{"x":1773552759449,"y":0},{"x":1773552764447,"y":0},{"x":1773552769449,"y":0},{"x":1773552774449,"y":0},{"x":1773552779447,"y":0},{"x":1773552784444,"y":0},{"x":1773552789449,"y":0},{"x":1773552794447,"y":1},{"x":1773552799448,"y":0},{"x":1773552804447,"y":0},{"x":1773552809447,"y":107},{"x":1773552814446,"y":0},{"x":1773552819447,"y":0},{"x"
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[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Memory Usage (MB)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"Used","color":"#377eb899","points":[{"x":1773552084454,"y":2903.28125},{"x":1773552089451,"y":2907.53125},{"x":1773552094446,"y":2911.09375},{"x":1773552099448,"y":2837.046875},{"x":1773552104446,"y":2881.234375},{"x":1773552109446,"y":2880.34375},{"x":1773552114447,"y":2896.296875},{"x":1773552119446,"y":2786.8125},{"x":1773552124447,"y":2881.84375},{"x":1773552129447,"y":2762.40625},{"x":1773552134447,"y":2815.234375},{"x":1773552139446,"y":2880.5625},{"x":1773552144446,"y":2618.265625},{"x":1773552149446,"y":2692.640625},{"x":1773552154446,"y":2815.734375},{"x":1773552159449,"y":2902.125},{"x":1773552164457,"y":1708.34375},{"x":1773552169446,"y":2145.765625},{"x":1773552174447,"y":2066.59375},{"x":1773552179446,"y":1903.96875},{"x":1773552184446,"y":2392.140625},{"x":1773552189448,"y":1933.171875},{"x":1773552194446,"y":2366.9375},{"x":1773552199446,"y":2383.15625},{"x":1773552204447,"y":2292.046875},{"x":1773552209447,"y":2487.375},{"x":1773552214450,"y":2527.09375},{"x":1773552219447,"y":2809.453125},{"x":1773552224446,"y":2807.5},{"x":1773552229448,"y":2803.484375},{"x":1773552234447,"y":2800.71875},{"x":1773552239446,"y":2802.53125},{"x":1773552244446,"y":2795.890625},{"x":1773552249446,"y":2801.140625},{"x":1773552254446,"y":1571.765625},{"x":1773552259446,"y":1741.640625},{"x":1773552264446,"y":1730.09375},{"x":1773552269446,"y":1715.046875},{"x":1773552274446,"y":1725.296875},{"x":1773552279444,"y":1771.109375},{"x":1773552284448,"y":1762.5625},{"x":1773552289446,"y":1813.40625},{"x":1773552294446,"y":1828.03125},{"x":1773552299446,"y":1894.375},{"x":1773552304449,"y":1973.390625},{"x":1773552309447,"y":1889.828125},{"x":1773552314445,"y":1879.78125},{"x":1773552319446,"y":1951.21875},{"x":1773552324447,"y":1937.78125},{"x":1773552329449,"y":1875.8125},{"x":1773552334446,"y":1985.4375},{"x":1773552339447,"y":2065.921875},{"x":1773552344448,"y":2011.6875},{"x":1773552349447,"y":2032.640625},{"x":1773552354445,"y":2081.5},{"x":1773552359447,"y":2046.703125},{"x":1773552364447,"y":2116.0625},{"x":1773552369447,"y":2124.875},{"x":1773552374446,"y":2152.609375},{"x":1773552379446,"y":2158.390625},{"x":1773552384447,"y":2160.921875},{"x":1773552389446,"y":2172.09375},{"x":1773552394447,"y":2174.5},{"x":1773552399445,"y":2035.625},{"x":1773552404446,"y":1898.03125},{"x":1773552409447,"y":1905.703125},{"x":1773552414446,"y":1914.828125},{"x":1773552419447,"y":1912.921875},{"x":1773552424447,"y":1917.75},{"x":1773552429449,"y":1920.84375},{"x":1773552434446,"y":1865.890625},{"x":1773552439447,"y":1630.921875},{"x":1773552444447,"y":1811.765625},{"x":1773552449448,"y":1889.453125},{"x":1773552454449,"y":1990.59375},{"x":1773552459447,"y":2068.4375},{"x":1773552464448,"y":2113.765625},{"x":1773552469446,"y":2598.890625},{"x":1773552474447,"y":2821.1875},{"x":1773552479446,"y":2530.078125},{"x":1773552484446,"y":2383.65625},{"x":1773552489445,"y":2729.4375},{"x":1773552494447,"y":2387.3125},{"x":1773552499446,"y":2662.96875},{"x":1773552504445,"y":2416.515625},{"x":1773552509448,"y":2667.296875},{"x":1773552514449,"y":2309.25},{"x":1773552519449,"y":2622.5625},{"x":1773552524447,"y":2582.9375},{"x":1773552529446,"y":2297.4375},{"x":1773552534446,"y":2907.8125},{"x":1773552539448,"y":2554.0625},{"x":1773552544451,"y":2595.671875},{"x":1773552549446,"y":2385.21875},{"x":1773552554448,"y":2210.125},{"x":1773552559446,"y":2602.203125},{"x":1773552564451,"y":2428.96875},{"x":1773552569446,"y":2263.484375},{"x":1773552574448,"y":2191.046875},{"x":1773552579446,"y":2633.546875},{"x":1773552584447,"y":2595.375},{"x":1773552589447,"y":2442.0625},{"x":1773552594446,"y":2267.109375},{"x":1773552599449,"y":2841.1875},{"x":1773552604448,"y":2570.015625},{"x":1773552609447,"y":2447.15625},{"x":1773552614446,"y":2053.0625},{"x":1773552619449,"y":2663.3125},{"x":1773552624447,"y":2357.890625},{"x":1773552629452,"y":2216.625},{"x":1773552634446,"y":2712
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[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"CPU Load (%)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"User Load","color":"#e41a1c99","points":[{"x":1773552084454,"y":13.190350481781515},{"x":1773552089451,"y":33.9572192513369},{"x":1773552094446,"y":35.70478723404255},{"x":1773552099448,"y":53.934095494283795},{"x":1773552104446,"y":46.657754010695186},{"x":1773552109446,"y":42.38190286094478},{"x":1773552114447,"y":38.65602129075183},{"x":1773552119446,"y":39.24983255190891},{"x":1773552124447,"y":51.068090787716955},{"x":1773552129447,"y":61.24497991967871},{"x":1773552134447,"y":60.63829787234043},{"x":1773552139446,"y":46.86248331108144},{"x":1773552144446,"y":41.20401337792642},{"x":1773552149446,"y":36.92307692307693},{"x":1773552154446,"y":47.22222222222222},{"x":1773552159449,"y":42.952127659574465},{"x":1773552164457,"y":54.84522207267833},{"x":1773552169446,"y":51.77494976557268},{"x":1773552174447,"y":45.836109260493004},{"x":1773552179446,"y":39.17112299465241},{"x":1773552184446,"y":36.92614770459082},{"x":1773552189448,"y":15.711395819285231},{"x":1773552194446,"y":40.33444816053512},{"x":1773552199446,"y":31.466666666666665},{"x":1773552204447,"y":44.86666666666667},{"x":1773552209447,"y":49.833222148098734},{"x":1773552214450,"y":36.54618473895582},{"x":1773552219447,"y":19.03807615230461},{"x":1773552224446,"y":19.331103678929765},{"x":1773552229448,"y":13.06970509383378},{"x":1773552234447,"y":18.47898599066044},{"x":1773552239446,"y":14.009339559706472},{"x":1773552244446,"y":18.993288590604028},{"x":1773552249446,"y":18.16353887399464},{"x":1773552254446,"y":15.16366065464262},{"x":1773552259446,"y":34.599999999999994},{"x":1773552264446,"y":32.53012048192771},{"x":1773552269446,"y":19.653564290473017},{"x":1773552274446,"y":53.03535690460307},{"x":1773552279444,"y":59.826782145236514},{"x":1773552284448,"y":51.46666666666667},{"x":1773552289446,"y":46.25668449197861},{"x":1773552294446,"y":55.377421509686044},{"x":1773552299446,"y":58.6436170212766},{"x":1773552304449,"y":58.10092961487384},{"x":1773552309447,"y":46.57258064516129},{"x":1773552314445,"y":15.831663326653306},{"x":1773552319446,"y":31.712191872085278},{"x":1773552324447,"y":59.53333333333334},{"x":1773552329449,"y":47.424749163879596},{"x":1773552334446,"y":17.280643000669794},{"x":1773552339447,"y":12.801608579088471},{"x":1773552344448,"y":12.090848363393453},{"x":1773552349447,"y":12.542144302090358},{"x":1773552354445,"y":15.44660846205507},{"x":1773552359447,"y":12.474849094567404},{"x":1773552364447,"y":14.572192513368984},{"x":1773552369447,"y":10.836120401337793},{"x":1773552374446,"y":11.244979919678714},{"x":1773552379446,"y":10.328638497652582},{"x":1773552384447,"y":8.803763440860216},{"x":1773552389446,"y":12.424445936870383},{"x":1773552394447,"y":9.005376344086022},{"x":1773552399445,"y":14.524765729585006},{"x":1773552404446,"y":19.168900804289542},{"x":1773552409447,"y":10.39570757880617},{"x":1773552414446,"y":7.800941492938803},{"x":1773552419447,"y":9.25553319919517},{"x":1773552424447,"y":9.011432414256893},{"x":1773552429449,"y":9.32260228034876},{"x":1773552434446,"y":10.466666666666667},{"x":1773552439447,"y":22.36400268636669},{"x":1773552444447,"y":15.95460614152203},{"x":1773552449448,"y":19.78537894030852},{"x":1773552454449,"y":44.02935290193462},{"x":1773552459447,"y":65.4230512991339},{"x":1773552464448,"y":38.08567603748327},{"x":1773552469446,"y":52.4349566377585},{"x":1773552474447,"y":48.733333333333334},{"x":1773552479446,"y":54.86666666666666},{"x":1773552484446,"y":71.20908483633934},{"x":1773552489445,"y":62.483311081441926},{"x":1773552494447,"y":51.521164021164026},{"x":1773552499446,"y":60.10745466756212},{"x":1773552504445,"y":59.266666666666666},{"x":1773552509448,"y":72.018654230513},{"x":1773552514449,"y":58.9572192513369},{"x":1773552519449,"y":67.33200266134398},{"x":1773552524447,"y":45.588235294117645},{"x":1773552529446,"y":31.6},{"x":1773552534446,"y":32.15476984656437},{"x":1773552539448,"y":37.2},{"x"
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AxiosError: Request failed with status code 403
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[Workflow Telemetry] AxiosError
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Run neurogenomics/rworkflows@master
Process completed with exit code 1.
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Run neurogenomics/rworkflows@master
'list_finemap_methods' is not an exported object from 'namespace:echofinemap'
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Run neurogenomics/rworkflows@master
R CMD check found ERRORs
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Complete job
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2, conda-incubator/setup-miniconda@v3, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run neurogenomics/rworkflows@master
prior_weights can't have NAs. Replacing with 0.
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Run neurogenomics/rworkflows@master
Could not identify any conda_env matching existing conda environments.
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Run neurogenomics/rworkflows@master
Could not identify any conda_env matching existing conda environments.
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Run neurogenomics/rworkflows@master
Could not identify any conda_env matching existing conda environments.
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Run neurogenomics/rworkflows@master
Could not identify any conda_env matching existing conda environments.
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Run neurogenomics/rworkflows@master
dependency ‘BiocVersion’ is not available
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Run neurogenomics/rworkflows@master
fribidi 1.0.16 is already installed and up-to-date.
To reinstall 1.0.16, run:
brew reinstall fribidi
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Run neurogenomics/rworkflows@master
harfbuzz 12.3.2 is already installed and up-to-date.
To reinstall 12.3.2, run:
brew reinstall harfbuzz
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Run neurogenomics/rworkflows@master
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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