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Add pkgdown config with echoverse dark theme and improve vignette #11

Add pkgdown config with echoverse dark theme and improve vignette

Add pkgdown config with echoverse dark theme and improve vignette #11

Triggered via push March 16, 2026 04:51
Status Success
Total duration 27m 12s
Artifacts 1

rworkflows.yml

on: push
Matrix: rworkflows
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26 errors and 20 warnings
windows-latest (auto)
[Workflow Telemetry] AxiosError
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windows-latest (auto)
AxiosError: Request failed with status code 403
windows-latest (auto)
[Workflow Telemetry] AxiosError
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windows-latest (auto)
AxiosError: Request failed with status code 403
windows-latest (auto)
[Workflow Telemetry] AxiosError
windows-latest (auto)
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windows-latest (auto)
AxiosError: Request failed with status code 403
windows-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
[Workflow Telemetry] getLineGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Network I/O Read (MB)"},"timeTicks":{"unit":"auto"}},"lines":[{"label":"Read","color":"#be4d25","points":[{"x":1773636680667,"y":0},{"x":1773636685664,"y":66},{"x":1773636690661,"y":0},{"x":1773636695662,"y":0},{"x":1773636700659,"y":0},{"x":1773636705660,"y":300},{"x":1773636710661,"y":0},{"x":1773636715661,"y":0},{"x":1773636720660,"y":3},{"x":1773636725661,"y":71},{"x":1773636730660,"y":0},{"x":1773636735662,"y":0},{"x":1773636740660,"y":0},{"x":1773636745660,"y":0},{"x":1773636750660,"y":0},{"x":1773636755659,"y":84},{"x":1773636760660,"y":17},{"x":1773636765660,"y":4},{"x":1773636770660,"y":19},{"x":1773636775661,"y":0},{"x":1773636780663,"y":3},{"x":1773636785661,"y":0},{"x":1773636790660,"y":8},{"x":1773636795661,"y":305},{"x":1773636800660,"y":113},{"x":1773636805660,"y":0},{"x":1773636810662,"y":0},{"x":1773636815659,"y":41},{"x":1773636820661,"y":157},{"x":1773636825663,"y":343},{"x":1773636830661,"y":366},{"x":1773636835660,"y":368},{"x":1773636840663,"y":407},{"x":1773636845659,"y":408},{"x":1773636850674,"y":68},{"x":1773636855661,"y":0},{"x":1773636860660,"y":0},{"x":1773636865659,"y":0},{"x":1773636870660,"y":0},{"x":1773636875661,"y":0},{"x":1773636880670,"y":0},{"x":1773636885660,"y":0},{"x":1773636890661,"y":0},{"x":1773636895661,"y":0},{"x":1773636900662,"y":2},{"x":1773636905663,"y":2},{"x":1773636910660,"y":0},{"x":1773636915665,"y":0},{"x":1773636920661,"y":0},{"x":1773636925662,"y":0},{"x":1773636930661,"y":0},{"x":1773636935662,"y":8},{"x":1773636940661,"y":0},{"x":1773636945661,"y":0},{"x":1773636950662,"y":0},{"x":1773636955660,"y":0},{"x":1773636960660,"y":0},{"x":1773636965662,"y":0},{"x":1773636970659,"y":0},{"x":1773636975660,"y":0},{"x":1773636980660,"y":0},{"x":1773636985662,"y":0},{"x":1773636990660,"y":0},{"x":1773636995663,"y":0},{"x":1773637000661,"y":0},{"x":1773637005661,"y":0},{"x":1773637010661,"y":0},{"x":1773637015661,"y":0},{"x":1773637020661,"y":0},{"x":1773637025661,"y":0},{"x":1773637030661,"y":0},{"x":1773637035661,"y":0},{"x":1773637040664,"y":0},{"x":1773637045663,"y":0},{"x":1773637050662,"y":0},{"x":1773637055660,"y":0},{"x":1773637060659,"y":0},{"x":1773637065661,"y":0},{"x":1773637070661,"y":0},{"x":1773637075663,"y":0},{"x":1773637080662,"y":0},{"x":1773637085661,"y":0},{"x":1773637090662,"y":0},{"x":1773637095661,"y":0},{"x":1773637100662,"y":0},{"x":1773637105661,"y":0},{"x":1773637110662,"y":0},{"x":1773637115661,"y":0},{"x":1773637120661,"y":0},{"x":1773637125662,"y":0},{"x":1773637130660,"y":0},{"x":1773637135661,"y":0},{"x":1773637140661,"y":0},{"x":1773637145661,"y":0},{"x":1773637150662,"y":0},{"x":1773637155661,"y":0},{"x":1773637160662,"y":0},{"x":1773637165661,"y":0},{"x":1773637170660,"y":0},{"x":1773637175663,"y":0},{"x":1773637180662,"y":0},{"x":1773637185662,"y":0},{"x":1773637190660,"y":0},{"x":1773637195662,"y":0},{"x":1773637200663,"y":0},{"x":1773637205660,"y":0},{"x":1773637210663,"y":0},{"x":1773637215662,"y":0},{"x":1773637220661,"y":0},{"x":1773637225660,"y":0},{"x":1773637230664,"y":0},{"x":1773637235661,"y":0},{"x":1773637240661,"y":0},{"x":1773637245662,"y":0},{"x":1773637250661,"y":107},{"x":1773637255662,"y":0},{"x":1773637260660,"y":0},{"x":1773637265660,"y":0},{"x":1773637270663,"y":0},{"x":1773637275661,"y":6},{"x":1773637280661,"y":0},{"x":1773637285661,"y":0},{"x":1773637290659,"y":0},{"x":1773637295658,"y":0},{"x":1773637300660,"y":0},{"x":1773637305658,"y":0},{"x":1773637310659,"y":0},{"x":1773637315658,"y":0},{"x":1773637320659,"y":0},{"x":1773637325659,"y":0},{"x":1773637330658,"y":0},{"x":1773637335659,"y":0},{"x":1773637340659,"y":1},{"x":1773637345658,"y":0},{"x":1773637350658,"y":0},{"x":1773637355674,"y":0},{"x":1773637360666,"y":0},{"x":1773637365659,"y":0},{"x":1773637370659,"y":0},{"x":1773637375660,"y":0},{"x":1773637380659,"y":0},{"x":1773637385659,"y":0},{"x":1773637390658,"y":0},{"x":1773637395659,"y":0},{"x":1773637400658,"y":0},{"x":1773637405660,"y":0},{"x":1773637410660,"y":0},{"x":1773637415658,"y":0},
macOS-latest (auto)
AxiosError: Request failed with status code 403
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Memory Usage (MB)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"Used","color":"#377eb899","points":[{"x":1773636680667,"y":3073.46875},{"x":1773636685664,"y":3060.5},{"x":1773636690661,"y":3051.1875},{"x":1773636695662,"y":3053.234375},{"x":1773636700659,"y":3002.4375},{"x":1773636705660,"y":3056.21875},{"x":1773636710661,"y":3046.078125},{"x":1773636715661,"y":3008.15625},{"x":1773636720660,"y":3006.8125},{"x":1773636725661,"y":2961.75},{"x":1773636730660,"y":2834.640625},{"x":1773636735662,"y":2822.328125},{"x":1773636740660,"y":2826.765625},{"x":1773636745660,"y":2871.328125},{"x":1773636750660,"y":2873.3125},{"x":1773636755659,"y":2554.234375},{"x":1773636760660,"y":2645.828125},{"x":1773636765660,"y":2812.5625},{"x":1773636770660,"y":2951.625},{"x":1773636775661,"y":2914.5},{"x":1773636780663,"y":1638.171875},{"x":1773636785661,"y":1715.71875},{"x":1773636790660,"y":1582.078125},{"x":1773636795661,"y":1912},{"x":1773636800660,"y":2028.65625},{"x":1773636805660,"y":2031.609375},{"x":1773636810662,"y":1974.390625},{"x":1773636815659,"y":2106.03125},{"x":1773636820661,"y":2107.84375},{"x":1773636825663,"y":2105.953125},{"x":1773636830661,"y":2120.671875},{"x":1773636835660,"y":2123.6875},{"x":1773636840663,"y":2170.3125},{"x":1773636845659,"y":2253.21875},{"x":1773636850674,"y":2436.78125},{"x":1773636855661,"y":2798.8125},{"x":1773636860660,"y":2899.890625},{"x":1773636865659,"y":2894.0625},{"x":1773636870660,"y":2894.15625},{"x":1773636875661,"y":2894.21875},{"x":1773636880670,"y":2897.59375},{"x":1773636885660,"y":2885.890625},{"x":1773636890661,"y":2874.84375},{"x":1773636895661,"y":2894.9375},{"x":1773636900662,"y":2897.546875},{"x":1773636905663,"y":2891.6875},{"x":1773636910660,"y":1788.3125},{"x":1773636915665,"y":1964.40625},{"x":1773636920661,"y":2095.765625},{"x":1773636925662,"y":2109.390625},{"x":1773636930661,"y":2170.84375},{"x":1773636935662,"y":2183.703125},{"x":1773636940661,"y":2234.234375},{"x":1773636945661,"y":2280.65625},{"x":1773636950662,"y":2341.921875},{"x":1773636955660,"y":2408.53125},{"x":1773636960660,"y":2479.828125},{"x":1773636965662,"y":2510.34375},{"x":1773636970659,"y":2550.515625},{"x":1773636975660,"y":2612.84375},{"x":1773636980660,"y":2582.6875},{"x":1773636985662,"y":2711.484375},{"x":1773636990660,"y":2665.71875},{"x":1773636995663,"y":2690.4375},{"x":1773637000661,"y":2694.8125},{"x":1773637005661,"y":2699.796875},{"x":1773637010661,"y":2693.578125},{"x":1773637015661,"y":2695.25},{"x":1773637020661,"y":2710.484375},{"x":1773637025661,"y":2729.125},{"x":1773637030661,"y":2730.46875},{"x":1773637035661,"y":2773.0625},{"x":1773637040664,"y":2807.84375},{"x":1773637045663,"y":2802.84375},{"x":1773637050662,"y":2777.46875},{"x":1773637055660,"y":2862.234375},{"x":1773637060659,"y":2873.546875},{"x":1773637065661,"y":2871.015625},{"x":1773637070661,"y":2800.734375},{"x":1773637075663,"y":2892.34375},{"x":1773637080662,"y":2908.796875},{"x":1773637085661,"y":2926.59375},{"x":1773637090662,"y":2897.078125},{"x":1773637095661,"y":2900.78125},{"x":1773637100662,"y":2923.46875},{"x":1773637105661,"y":2916.890625},{"x":1773637110662,"y":2898.390625},{"x":1773637115661,"y":2904.515625},{"x":1773637120661,"y":2916.125},{"x":1773637125662,"y":2881.671875},{"x":1773637130660,"y":2921.796875},{"x":1773637135661,"y":2928.921875},{"x":1773637140661,"y":2926.375},{"x":1773637145661,"y":2927.375},{"x":1773637150662,"y":2928.65625},{"x":1773637155661,"y":2926.40625},{"x":1773637160662,"y":2927.984375},{"x":1773637165661,"y":2928.828125},{"x":1773637170660,"y":2764.75},{"x":1773637175663,"y":2771.625},{"x":1773637180662,"y":2356.828125},{"x":1773637185662,"y":2411.890625},{"x":1773637190660,"y":2428.078125},{"x":1773637195662,"y":2432.203125},{"x":1773637200663,"y":2436.4375},{"x":1773637205660,"y":2438.203125},{"x":1773637210663,"y":2435.078125},{"x":1773637215662,"y":2438.0625},{"x":1773637220661,"y":2443.125},{"x":1773637225660,"y":2445.1875},{"x":1773637230664,"y":2451.
macOS-latest (auto)
AxiosError: Request failed with status code 403
macOS-latest (auto)
[Workflow Telemetry] AxiosError
macOS-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"CPU Load (%)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"User Load","color":"#e41a1c99","points":[{"x":1773636680667,"y":33.87277679858997},{"x":1773636685664,"y":35.093582887700535},{"x":1773636690661,"y":27.16216216216216},{"x":1773636695662,"y":42.49667994687915},{"x":1773636700659,"y":47.160988643954575},{"x":1773636705660,"y":35.90604026845637},{"x":1773636710661,"y":33.66733466933868},{"x":1773636715661,"y":36.02150537634409},{"x":1773636720660,"y":35.91455273698264},{"x":1773636725661,"y":32.21122112211221},{"x":1773636730660,"y":56.156968876860624},{"x":1773636735662,"y":33.511348464619495},{"x":1773636740660,"y":37.986577181208055},{"x":1773636745660,"y":42.13333333333333},{"x":1773636750660,"y":27.900737759892692},{"x":1773636755659,"y":23.19034852546917},{"x":1773636760660,"y":21.715817694369974},{"x":1773636765660,"y":28.150134048257375},{"x":1773636770660,"y":27.570399476096924},{"x":1773636775661,"y":37.35514655760054},{"x":1773636780663,"y":19.063545150501675},{"x":1773636785661,"y":25.116900467601873},{"x":1773636790660,"y":7.635632953784327},{"x":1773636795661,"y":13.06970509383378},{"x":1773636800660,"y":14.711864406779663},{"x":1773636805660,"y":17.555705604321403},{"x":1773636810662,"y":18.712273641851105},{"x":1773636815659,"y":36.47925033467202},{"x":1773636820661,"y":28.390113560454246},{"x":1773636825663,"y":12.860013395847286},{"x":1773636830661,"y":14.36241610738255},{"x":1773636835660,"y":14.762859051436205},{"x":1773636840663,"y":26.11592271818787},{"x":1773636845659,"y":28.205128205128204},{"x":1773636850674,"y":38.95685769478428},{"x":1773636855661,"y":18.97150799166088},{"x":1773636860660,"y":23.576691225720026},{"x":1773636865659,"y":14.976494291470784},{"x":1773636870660,"y":15.67314132618888},{"x":1773636875661,"y":14.980026631158456},{"x":1773636880670,"y":22.88021534320323},{"x":1773636885660,"y":24.601063829787233},{"x":1773636890661,"y":22.55892255892256},{"x":1773636895661,"y":16.666666666666664},{"x":1773636900662,"y":16.430976430976433},{"x":1773636905663,"y":9.953239812959252},{"x":1773636910660,"y":13.41381623071764},{"x":1773636915665,"y":27.62541806020067},{"x":1773636920661,"y":40.629183400267735},{"x":1773636925662,"y":22.103861517976032},{"x":1773636930661,"y":19.571045576407506},{"x":1773636935662,"y":26.1219022103148},{"x":1773636940661,"y":22.47340425531915},{"x":1773636945661,"y":41.37700534759358},{"x":1773636950662,"y":59.032907991940895},{"x":1773636955660,"y":62.925851703406806},{"x":1773636960660,"y":40.3462050599201},{"x":1773636965662,"y":41.81696726786907},{"x":1773636970659,"y":63.28437917222964},{"x":1773636975660,"y":58.81174899866488},{"x":1773636980660,"y":49.101796407185624},{"x":1773636985662,"y":66.1990647962592},{"x":1773636990660,"y":53.14591700133868},{"x":1773636995663,"y":58.91783567134269},{"x":1773637000661,"y":45.29686457638425},{"x":1773637005661,"y":21.61440960640427},{"x":1773637010661,"y":22.03616878767582},{"x":1773637015661,"y":17.478318879252836},{"x":1773637020661,"y":53.40909090909091},{"x":1773637025661,"y":52.785145888594165},{"x":1773637030661,"y":45.77181208053691},{"x":1773637035661,"y":43.94141145139814},{"x":1773637040664,"y":17.014122394082047},{"x":1773637045663,"y":13.212608987256875},{"x":1773637050662,"y":15.580926796507724},{"x":1773637055660,"y":15.874079035498994},{"x":1773637060659,"y":13.498992612491605},{"x":1773637065661,"y":11.334674714956405},{"x":1773637070661,"y":12.131367292225201},{"x":1773637075663,"y":17.962466487935657},{"x":1773637080662,"y":16.252518468770987},{"x":1773637085661,"y":17.012726054922975},{"x":1773637090662,"y":15.973154362416109},{"x":1773637095661,"y":17.4146014735432},{"x":1773637100662,"y":14.25689307330195},{"x":1773637105661,"y":20.92555331991952},{"x":1773637110662,"y":23.59625668449198},{"x":1773637115661,"y":24.51698867421719},{"x":1773637120661,"y":22.26693494299128},{"x":1773637125662,"y":12.131367292225201},{"x":1773637130660,"y":11.812080536912752},{"x":17
macOS-latest (auto)
AxiosError: Request failed with status code 403
macOS-latest (auto)
[Workflow Telemetry] AxiosError
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
[Workflow Telemetry] Unable to report stat collector result
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
[Workflow Telemetry] Unable to finish stat collector
windows-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, catchpoint/workflow-telemetry-action@v2, conda-incubator/setup-miniconda@v3, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
windows-latest (auto)
prior_weights can't have NAs. Replacing with 0.
windows-latest (auto)
Could not identify any conda_env matching existing conda environments.
windows-latest (auto)
Could not identify any conda_env matching existing conda environments.
windows-latest (auto)
Could not identify any conda_env matching existing conda environments.
windows-latest (auto)
Could not identify any conda_env matching existing conda environments.
windows-latest (auto)
dependency 'BiocVersion' is not available
windows-latest (auto)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
macOS-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, catchpoint/workflow-telemetry-action@v2, conda-incubator/setup-miniconda@v3, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (auto)
prior_weights can't have NAs. Replacing with 0.
macOS-latest (auto)
Could not identify any conda_env matching existing conda environments.
macOS-latest (auto)
Could not identify any conda_env matching existing conda environments.
macOS-latest (auto)
Could not identify any conda_env matching existing conda environments.
macOS-latest (auto)
Could not identify any conda_env matching existing conda environments.
macOS-latest (auto)
dependency ‘BiocVersion’ is not available
macOS-latest (auto)
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
macOS-latest (auto)
harfbuzz 12.3.2 is already installed and up-to-date. To reinstall 12.3.2, run: brew reinstall harfbuzz
macOS-latest (auto)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
ubuntu-latest (auto)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, catchpoint/workflow-telemetry-action@v2, conda-incubator/setup-miniconda@v3, docker/build-push-action@v6, docker/login-action@v3, docker/setup-buildx-action@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
ubuntu-latest (auto)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.

Artifacts

Produced during runtime
Name Size Digest
RajLabMSSM~echofinemap~2J90PH.dockerbuild
103 KB
sha256:889e7cc3292c77bdbc233bd5ada90c1faa9bc1d56ae907ee5a3d0a08125a82ed