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A dedicated Bioinformatics professional with a Master's degree, specializing in automated pipelines for NGS-based pathogen detection and reproducible workflows.
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A passionate and detail-oriented M.Sc. Bioinformatics postgraduate with strong expertise in computational biology, AI/ML integration in life sciences, and high-throughput bioinformatics workflows. My work is driven by a commitment to leveraging computational tools to solve complex biological problems, particularly in the areas of Next-Generation Sequencing (NGS) analysis, metagenomics, pathogen detection, and biomarker discovery.
With a Master's in Bioinformatics, I am passionate about applying computational solutions to biological challenges. My expertise includes biostatistics, version control with Git, and strong analytical thinking. I thrive in collaborative research environments and have a keen interest in leveraging AI/ML to drive scientific discovery.
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Over the course of my academic and professional journey, I have developed a strong command over regulatory genomics, transcription factor binding site (TFBS) analysis, machine learning for omics data, and automated bioinformatics pipelines. My approach blends rigorous biological insight with advanced computational methods, enabling me to transform raw biological data into actionable knowledge.
<h3class="text-xl font-semibold text-cyan-300">AI/ML Analysis of TCGA - LUSC | Lung Cancer Gene Expression Dataset</h3>
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<pclass="text-[#8892b0] mt-1">Utilized machine learning models to analyze gene expression data for lung cancer research.</p>
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<h3class="text-xl font-semibold text-cyan-300">AI/ML Analysis of TCGA-LUSC Gene Expression Dataset</h3>
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<pclass="text-[#8892b0] mt-1">Applied machine learning models (Logistic Regression, KNN, Random Forest, XGBoost) to classify lung cancer samples from TCGA, achieving exceptional accuracy after a rigorous preprocessing pipeline including PCA.</p>
<h3class="text-xl font-semibold text-cyan-300">In Silico Design of a Multi-Epitope Vaccine for Group A Streptococcus (GAS)</h3>
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<pclass="text-[#8892b0] mt-1">Designed a novel vaccine candidate using computational immunology and vaccine design principles.</p>
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<pclass="text-[#8892b0] mt-1">Leveraged immunoinformatics and molecular simulation to design and validate a chimeric vaccine candidate, which demonstrated high antigenicity, structural stability, and strong binding to key immune receptors.</p>
<pclass="text-[#8892b0] mt-1">Developed a fully automated Snakemake pipeline for high-throughput metagenomics analysis, integrating tools like Kraken2 and Krona for efficient pathogen identification from raw FASTQ files to interactive visualizations.</p>
<li>Gained hands-on experience in NGS workflows, including quality control (FastQC) and trimming (TrimGalore).</li>
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<li>Processed Whole-Genome (WGS) and Whole-Metagenome (WMS) sequencing data.</li>
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<li>Contributed to the generation of genomic and metagenomic reports.</li>
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<li>Gained hands-on experience in complete NGS workflows, from quality control (FastQC) to de novo genome/transcriptome assembly (Velvet, Trinity).</li>
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<li>Processed Whole-Genome (WGS) and Whole-Metagenome (WMS) sequencing data, including trimming and host read removal.</li>
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<li>Utilized SAMtools and Minimap2 for alignment processing and validation.</li>
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