a kludge for ancient dplyr #101
Workflow file for this run
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| on: | |
| push: | |
| schedule: | |
| - cron: '17 13 23 * *' # 23rd of month at 13:17 UTC | |
| workflow_dispatch: | |
| # A more complete suite of checks to run monthly; each PR/merge need not pass all these, but they should pass before CRAN release | |
| name: R-CMD-check-occasional | |
| jobs: | |
| R-CMD-check-occasional: | |
| runs-on: ${{ matrix.os }} | |
| name: ${{ matrix.os }} (${{ matrix.r }}, ${{ matrix.locale }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macOS-latest, windows-latest, ubuntu-latest] | |
| r: ['devel', 'release', '3.5', '3.6', '4.0', '4.1', '4.2', '4.3', '4.4', '4.5'] | |
| locale: ['en_US.utf8', | |
| # Multibyte characters: Mandarin | |
| 'zh_CN.utf8', | |
| # Collate order (#3502, see also #7837): Latvian, Azeri, Hungarian, Faroese, Albanian | |
| 'lv_LV.utf8', 'az_AZ.utf8', 'hu_HU.utf8', 'fo_FO.utf8', 'sq_MK.utf8'] | |
| # we're constrained by GHA inflexibility to do a tedious thing here with 'exclude' below. | |
| # better would be for GHA to support multiple 'matrix' configs (one for ubuntu, one for other OS); | |
| # an approach with multiple jobs would tediously require copy-pasting the _rest_ of the steps | |
| exclude: | |
| # only run non-English locale CI on Ubuntu | |
| - os: macOS-latest | |
| locale: 'zh_CN.utf8' | |
| - os: macOS-latest | |
| locale: 'lv_LV.utf8' | |
| - os: macOS-latest | |
| locale: 'az_AZ.utf8' | |
| - os: macOS-latest | |
| locale: 'hu_HU.utf8' | |
| - os: macOS-latest | |
| locale: 'fo_FO.utf8' | |
| - os: macOS-latest | |
| locale: 'sq_MK.utf8' | |
| - os: windows-latest | |
| locale: 'zh_CN.utf8' | |
| - os: windows-latest | |
| locale: 'lv_LV.utf8' | |
| - os: windows-latest | |
| locale: 'az_AZ.utf8' | |
| - os: windows-latest | |
| locale: 'hu_HU.utf8' | |
| - os: windows-latest | |
| locale: 'fo_FO.utf8' | |
| - os: windows-latest | |
| locale: 'sq_MK.utf8' | |
| # macOS/arm64 only available for R>=4.1.0 | |
| - os: macOS-latest | |
| r: '3.5' | |
| - os: macOS-latest | |
| r: '3.6' | |
| - os: macOS-latest | |
| r: '4.0' | |
| - os: macOS-latest | |
| r: '4.1' | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| RUN_ALL_DATATABLE_TESTS: yes | |
| steps: | |
| - name: Set locale | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo locale-gen "${{ matrix.locale }}" | |
| echo "LC_ALL=${{ matrix.locale }}" >> $GITHUB_ENV | |
| echo "LANGUAGE=$(echo '${{ matrix.locale }}' | cut -d'.' -f1)" >> $GITHUB_ENV | |
| - uses: actions/checkout@v7 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.r }} | |
| - name: Set script permissions | |
| run: chmod +x configure cleanup 2>/dev/null || true # Silence some GHA Annotations | |
| shell: bash | |
| - name: Install check dependencies (Ubuntu) | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libcurl4-openssl-dev libudunits2-dev libgdal-dev libgeos-dev libproj-dev pandoc | |
| - name: Pre-untap untrusted Homebrew taps on macOS | |
| if: matrix.os == 'macOS-latest' | |
| run: brew untap aws/tap 2>/dev/null || true | |
| - name: Install R Package Build Dependencies on MacOS | |
| if: matrix.os == 'macOS-latest' | |
| uses: r-hub/actions/setup-r-sysreqs@v1 | |
| with: | |
| type: 'minimal' | |
| - name: Install check dependencies (macOS) | |
| if: matrix.os == 'macOS-latest' | |
| run: | | |
| brew install gdal proj gettext | |
| brew link --overwrite --force gettext 2>/dev/null || true | |
| - name: Check | |
| env: | |
| # several Suggests dependencies have R dependencies more recent than ours | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| _R_CHECK_TESTS_NLINES_: 0 | |
| run: | | |
| options(crayon.enabled=TRUE) | |
| dir.create("~/.R", showWarnings=FALSE) | |
| # suppress noisy Annotation for e.g. {hexbin} about tabs v. spaces | |
| cat("FCFLAGS += -Wno-tabs\nFFLAGS += -Wno-tabs\n", file="~/.R/Makevars", append=TRUE) | |
| # e.g. Annotation about lacking macosx binaries: bin/macosx/sonoma-arm64/contrib/4.7 | |
| if (grepl("Under development", R.version$status)) options(pkgType="source") | |
| # to avoid Annotation about certain packages being unavailable, use this old snapshot repo | |
| if (getRversion() < "3.6") options(repos=c(CRAN="https://packagemanager.posit.co/cran/2020-04-24")) | |
| message("*** Using the following repos for installation ***") | |
| print(getOption("repos")) | |
| message("*** Installing Suggested packages ***") | |
| sugg <- names(tools:::.split_dependencies(read.dcf("DESCRIPTION", "Suggests"))) | |
| install.packages(sugg) | |
| other_deps_expr = parse('inst/tests/other.Rraw', n=1L) | |
| eval(other_deps_expr) | |
| other_pkgs = setdiff( | |
| get(as.character(other_deps_expr[[1:2]])), | |
| tools:::.get_standard_package_names()$base) # skip parallel | |
| # Many will not install on oldest R versions | |
| message("*** Installing fully optional packages ***") | |
| try(install.packages(c(other_pkgs, "rcmdcheck"))) | |
| has_other_pkg = sapply(other_pkgs, requireNamespace, quietly=TRUE) | |
| run_other = all(has_other_pkg) | |
| if (run_other) { | |
| desc = read.dcf("DESCRIPTION") | |
| desc[1L, "Suggests"] = toString(unique(c(desc[1, "Suggests"], other_pkgs))) | |
| write.dcf(desc, "DESCRIPTION") | |
| message("Setting TEST_DATA_TABLE_WITH_OTHER_PACKAGES=TRUE to run other.Rraw") | |
| } else { | |
| message(sprintf("Skipping other.Rraw since some required packages are not available: %s\n", toString(other_pkgs[!has_other_pkg]))) | |
| } | |
| Sys.setenv(TEST_DATA_TABLE_WITH_OTHER_PACKAGES=as.character(run_other)) | |
| do_vignettes = requireNamespace("litedown", quietly=TRUE) | |
| build_args = NULL | |
| check_args = c("--no-manual", "--as-cran") | |
| if (!do_vignettes) { | |
| message("Skipping vignettes since knitr is unavailable.") | |
| build_args = "--no-build-vignettes" | |
| check_args = c(check_args, "--no-build-vignettes", "--ignore-vignettes") | |
| } | |
| if (requireNamespace("rcmdcheck", quietly=TRUE)) { | |
| rcmdcheck::rcmdcheck(args=check_args, build_args=build_args, error_on="warning", check_dir="check") | |
| } else { | |
| Rbin = if (.Platform$OS.type == "windows") "R.exe" else "R" | |
| system2(Rbin, c("CMD", "build", ".", build_args)) | |
| dt_tar = list.files(pattern = "^data[.]table_.*[.]tar[.]gz$") | |
| if (!length(dt_tar)) stop("Built tar.gz not found among: ", toString(list.files())) | |
| res = system2(Rbin, c("CMD", "check", dt_tar[1L], check_args), stdout=TRUE, stderr=TRUE) | |
| if (!is.null(attr(res, "status")) || anyNA(res) || any(grepl("^Status:.*(ERROR|WARNING)", res))) { | |
| writeLines(as.character(res)) | |
| stop("R CMD check failed") | |
| } | |
| } | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.r }}-l${{ matrix.locale }}results | |
| path: check |