Update CHANGELOG.md [skip ci]

Author: Repronim Bot

CHANGELOG.md

@@ -1,3 +1,92 @@
+# 1.0.0 (Tue Jun 11 2024)
+
+#### 💥 Breaking Change
+
+- Bump actions/checkout from 3 to 4 [#582](https://github.com/ReproNim/neurodocker/pull/582) ([@dependabot[bot]](https://github.com/dependabot[bot]))
+- Bump actions/checkout from 3 to 4 [#573](https://github.com/ReproNim/neurodocker/pull/573) ([@dependabot[bot]](https://github.com/dependabot[bot]))
+- Bump actions/stale from 5 to 8 [#560](https://github.com/ReproNim/neurodocker/pull/560) ([@dependabot[bot]](https://github.com/dependabot[bot]))
+- Bump actions/checkout from 2 to 3 [#557](https://github.com/ReproNim/neurodocker/pull/557) ([@dependabot[bot]](https://github.com/dependabot[bot]))
+- Bump actions/setup-python from 2 to 4 [#556](https://github.com/ReproNim/neurodocker/pull/556) ([@dependabot[bot]](https://github.com/dependabot[bot]))
+
+#### 🐛 Bug Fix
+
+- [BOT] update pre-commit hooks [#616](https://github.com/ReproNim/neurodocker/pull/616) ([@Remi-Gau](https://github.com/Remi-Gau) [@github-actions[bot]](https://github.com/github-actions[bot]))
+- [BOT] update pre-commit hooks [#614](https://github.com/ReproNim/neurodocker/pull/614) ([@Remi-Gau](https://github.com/Remi-Gau) [@github-actions[bot]](https://github.com/github-actions[bot]))
+- make scripts executable after build [#615](https://github.com/ReproNim/neurodocker/pull/615) ([@stebo85](https://github.com/stebo85))
+- [BOT] update pre-commit hooks [#613](https://github.com/ReproNim/neurodocker/pull/613) ([@Remi-Gau](https://github.com/Remi-Gau) [@github-actions[bot]](https://github.com/github-actions[bot]))
+- Use HTTPS for NeuroDebian APT listing urls [#612](https://github.com/ReproNim/neurodocker/pull/612) ([@TheChymera](https://github.com/TheChymera))
+- [BOT] update pre-commit hooks [#610](https://github.com/ReproNim/neurodocker/pull/610) ([@Remi-Gau](https://github.com/Remi-Gau) [@github-actions[bot]](https://github.com/github-actions[bot]))
+- [FIX] Update branch in update_precommit_hooks.yml [#609](https://github.com/ReproNim/neurodocker/pull/609) ([@Remi-Gau](https://github.com/Remi-Gau))
+- [ENH] package with hatchling and switch to pyproject.toml [#607](https://github.com/ReproNim/neurodocker/pull/607) ([@Remi-Gau](https://github.com/Remi-Gau))
+- [MAINT] update linting config and CI [#604](https://github.com/ReproNim/neurodocker/pull/604) ([@Remi-Gau](https://github.com/Remi-Gau))
+- fixed flake8 errors from #597 [#598](https://github.com/ReproNim/neurodocker/pull/598) ([@Vbitz](https://github.com/Vbitz))
+- Added "--add" command line option to add tar files as docker layers. [#597](https://github.com/ReproNim/neurodocker/pull/597) ([@Vbitz](https://github.com/Vbitz))
+- added versions to Library PATH [#593](https://github.com/ReproNim/neurodocker/pull/593) ([@stebo85](https://github.com/stebo85))
+- update matlabmcr [#592](https://github.com/ReproNim/neurodocker/pull/592) ([@stebo85](https://github.com/stebo85))
+- [FIX] add url bids validator [#591](https://github.com/ReproNim/neurodocker/pull/591) ([@Remi-Gau](https://github.com/Remi-Gau))
+- [DOC] add list of supported softwares [#587](https://github.com/ReproNim/neurodocker/pull/587) ([@Remi-Gau](https://github.com/Remi-Gau))
+- [ENH] add templates bids_validator [#586](https://github.com/ReproNim/neurodocker/pull/586) ([@Remi-Gau](https://github.com/Remi-Gau))
+- [MAINT] test build jq [#589](https://github.com/ReproNim/neurodocker/pull/589) ([@Remi-Gau](https://github.com/Remi-Gau))
+- [ENH] test on python 3.12 [#588](https://github.com/ReproNim/neurodocker/pull/588) ([@Remi-Gau](https://github.com/Remi-Gau))
+- Update fsl.yaml [#583](https://github.com/ReproNim/neurodocker/pull/583) ([@stebo85](https://github.com/stebo85))
+- [DOC] update doc [#569](https://github.com/ReproNim/neurodocker/pull/569) ([@Remi-Gau](https://github.com/Remi-Gau))
+- [ENH] implement more recent mrtrix version [#579](https://github.com/ReproNim/neurodocker/pull/579) ([@Remi-Gau](https://github.com/Remi-Gau))
+- Update examples.rst [#578](https://github.com/ReproNim/neurodocker/pull/578) ([@stebo85](https://github.com/stebo85))
+- added FSL interactivity note [#576](https://github.com/ReproNim/neurodocker/pull/576) ([@stebo85](https://github.com/stebo85))
+- Include FSL license auto-yes example [#575](https://github.com/ReproNim/neurodocker/pull/575) ([@stebo85](https://github.com/stebo85))
+- [MAINT] Update stale.yml [#577](https://github.com/ReproNim/neurodocker/pull/577) ([@Remi-Gau](https://github.com/Remi-Gau))
+- [FIX] install the proper dependencies for doc build [#574](https://github.com/ReproNim/neurodocker/pull/574) ([@Remi-Gau](https://github.com/Remi-Gau))
+- [DOC] auto doc main CLI [#463](https://github.com/ReproNim/neurodocker/pull/463) ([@Remi-Gau](https://github.com/Remi-Gau))
+- [FIX] use local var for software name in bootstrap workflow [#572](https://github.com/ReproNim/neurodocker/pull/572) ([@Remi-Gau](https://github.com/Remi-Gau))
+- [FIX] use env variable in bootstrap workflow [#571](https://github.com/ReproNim/neurodocker/pull/571) ([@Remi-Gau](https://github.com/Remi-Gau))
+- [INFRA] add possibility to only build a single workflow [#570](https://github.com/ReproNim/neurodocker/pull/570) ([@Remi-Gau](https://github.com/Remi-Gau))
+- [MAINT] test build of conda as part of the bootstrap workflow [#566](https://github.com/ReproNim/neurodocker/pull/566) ([@Remi-Gau](https://github.com/Remi-Gau))
+- [MAINT] minimize file changes that can trigger the bootstrap workflow [#564](https://github.com/ReproNim/neurodocker/pull/564) ([@Remi-Gau](https://github.com/Remi-Gau))
+- set python version for format job [#563](https://github.com/ReproNim/neurodocker/pull/563) ([@stebo85](https://github.com/stebo85))
+- Add mamba option to miniconda [#562](https://github.com/ReproNim/neurodocker/pull/562) ([@Shotgunosine](https://github.com/Shotgunosine))
+- [MAINT] remove oldest distro in automated build testing [#559](https://github.com/ReproNim/neurodocker/pull/559) ([@Remi-Gau](https://github.com/Remi-Gau))
+- [MAINT] split format checking and testing in CI [#554](https://github.com/ReproNim/neurodocker/pull/554) ([@Remi-Gau](https://github.com/Remi-Gau))
+- [MAINT] Simplify type annotations [#551](https://github.com/ReproNim/neurodocker/pull/551) ([@Remi-Gau](https://github.com/Remi-Gau))
+- apply isort and all pre-commit hooks [#549](https://github.com/ReproNim/neurodocker/pull/549) ([@Remi-Gau](https://github.com/Remi-Gau))
+- Mcr bug [#471](https://github.com/ReproNim/neurodocker/pull/471) ([@stebo85](https://github.com/stebo85))
+- Add codespell: config, pre-commit, workflow + 1 typo fixed [#544](https://github.com/ReproNim/neurodocker/pull/544) ([@yarikoptic](https://github.com/yarikoptic) [@stebo85](https://github.com/stebo85))
+- added freesurfer 7.3.2 [#547](https://github.com/ReproNim/neurodocker/pull/547) ([@stebo85](https://github.com/stebo85))
+- add fsl 6.0.7.1 [#543](https://github.com/ReproNim/neurodocker/pull/543) ([@stebo85](https://github.com/stebo85))
+- added freesurfer 7.4.1 [#542](https://github.com/ReproNim/neurodocker/pull/542) ([@hjbockholt](https://github.com/hjbockholt))
+- Fixing my update for mcr2023a [#540](https://github.com/ReproNim/neurodocker/pull/540) ([@dnkennedy](https://github.com/dnkennedy))
+- Update matlabmcr.yaml [#539](https://github.com/ReproNim/neurodocker/pull/539) ([@dnkennedy](https://github.com/dnkennedy))
+- Update years to have full range of years of the project [#534](https://github.com/ReproNim/neurodocker/pull/534) ([@yarikoptic](https://github.com/yarikoptic))
+- Update cat [#533](https://github.com/ReproNim/neurodocker/pull/533) ([@stebo85](https://github.com/stebo85))
+
+#### ⚠️ Pushed to `master`
+
+- Change name of parent directory ([@kaczmarj](https://github.com/kaczmarj))
+
+#### 🏠 Internal
+
+- Upgrade intuit auto to 11.1.6 (most recent) [#617](https://github.com/ReproNim/neurodocker/pull/617) ([@yarikoptic](https://github.com/yarikoptic))
+
+#### 🔩 Dependency Updates
+
+- Bump actions/setup-python from 4 to 5 [#594](https://github.com/ReproNim/neurodocker/pull/594) ([@dependabot[bot]](https://github.com/dependabot[bot]))
+- Bump actions/stale from 8 to 9 [#595](https://github.com/ReproNim/neurodocker/pull/595) ([@dependabot[bot]](https://github.com/dependabot[bot]))
+
+#### Authors: 11
+
+- [@dependabot[bot]](https://github.com/dependabot[bot])
+- [@github-actions[bot]](https://github.com/github-actions[bot])
+- David Kennedy ([@dnkennedy](https://github.com/dnkennedy))
+- Dylan Nielson ([@Shotgunosine](https://github.com/Shotgunosine))
+- H. Jeremy Bockholt ([@hjbockholt](https://github.com/hjbockholt))
+- Horea Christian ([@TheChymera](https://github.com/TheChymera))
+- Jakub Kaczmarzyk ([@kaczmarj](https://github.com/kaczmarj))
+- Joshua Scarsbrook ([@Vbitz](https://github.com/Vbitz))
+- Remi Gau ([@Remi-Gau](https://github.com/Remi-Gau))
+- Steffen Bollmann ([@stebo85](https://github.com/stebo85))
+- Yaroslav Halchenko ([@yarikoptic](https://github.com/yarikoptic))
+
+---
+
 # 0.9.5 (Fri May 12 2023)
 
 #### 🐛 Bug Fix