.env.example

# Copy or rename this file to ".env" to use it for environment variable configurations.
#
# Environment variables are optional. However, if ORION_STORAGE and/or ORION_GRAPHS are unset,
# ORION creates and uses these directories for its outputs: ~/ORION-workspace/storage/, ~/ORION-workspace/graphs/
# Choose your own directories below if you'd prefer the outputs of ORION to be written elsewhere.

# ---- Storage & Output ----

# Directory for source data downloads and ingest pipeline files
# ORION_STORAGE=~/ORION-workspace/storage

# Directory for final graph releases
# ORION_GRAPHS=~/ORION-workspace/graphs

# Directory for log files (if unset, logs go to stdout only)
# ORION_LOGS=

# Base URL utilized to generate URI identifiers utilized by metadata.
# For example, ROBOKOP graphs use https://robokop.renci.org/
# ORION_OUTPUT_URL=https://localhost

# ---- Mode ----

# Enable test/debug mode (sets log level to DEBUG and runs ingests with a smaller subset of data if possible)
# ORION_TEST_MODE=false

# ---- Biolink Model ----

# Biolink model version (optional - don't set this and ORION will use the latest)
# BL_VERSION=v4.3.4

# ---- Normalization URLs ----

# Edge normalization / BioLink Lookup URL
# EDGE_NORMALIZATION_URL=https://bl-lookup-sri.renci.org

# Node normalization URL
# NODE_NORMALIZATION_URL=https://nodenormalization-sri.renci.org

# ---- LitCoin / Bagel (may be removed in the future) ----

# Name resolution service URL
# NAMERES_URL=https://name-resolution-sri.renci.org

# SapBERT service URL
# SAPBERT_URL=https://babel-sapbert.apps.renci.org

# Shared source data path for LitCoin pipeline
# SHARED_SOURCE_DATA_PATH=/tmp/shared_data

# LitCoin predicate mapping service URL
# LITCOIN_PRED_MAPPING_URL=https://pred-mapping.apps.renci.org

# Bagel service URL
# BAGEL_URL=https://bagel.apps.renci.org

# Bagel service credentials
# BAGEL_SERVICE_USERNAME=
# BAGEL_SERVICE_PASSWORD=

# OpenAI credentials for LitCoin GPT features
# OPENAI_API_KEY=
# OPENAI_API_ORGANIZATION=