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main_code.py
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367 lines (299 loc) · 14.3 KB
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import numpy as np
import torch
import torch.nn as nn
import torch.optim as optim
from torch.utils.data import DataLoader, TensorDataset
import matplotlib.pyplot as plt
from sklearn.metrics import accuracy_score
import torchvision.transforms as transforms
from torchvision.transforms import RandomApply, RandomChoice, RandomRotation, RandomHorizontalFlip, RandomVerticalFlip, RandomAffine, RandomGrayscale
import torch
import torch.nn as nn
import torch.optim as optim
from torch.utils.data import Dataset, DataLoader, Subset
from sklearn.model_selection import KFold
import numpy as np
from torchvision import transforms
from torchvision.transforms import RandomApply, RandomChoice, RandomRotation, RandomHorizontalFlip, RandomVerticalFlip, RandomAffine, RandomGrayscale
# Function to generate random matrices
def generate_random_matrices(num_samples, img_size=32):
electrons_hit_energy = np.random.rand(num_samples, img_size, img_size)
electrons_time = np.random.rand(num_samples, img_size, img_size)
photons_hit_energy = np.random.rand(num_samples, img_size, img_size)
photons_time = np.random.rand(num_samples, img_size, img_size)
return electrons_hit_energy, electrons_time, photons_hit_energy, photons_time
num_datasets = 1000
num_samples_per_dataset = 1
all_electrons_hit_energy = []
all_electrons_time = []
all_photons_hit_energy = []
all_photons_time = []
for _ in range(num_datasets):
electrons_hit_energy, electrons_time, photons_hit_energy, photons_time = generate_random_matrices(num_samples_per_dataset)
all_electrons_hit_energy.append(electrons_hit_energy)
all_electrons_time.append(electrons_time)
all_photons_hit_energy.append(photons_hit_energy)
all_photons_time.append(photons_time)
# Convert lists to numpy arrays
all_electrons_hit_energy = np.array(all_electrons_hit_energy)
all_electrons_time = np.array(all_electrons_time)
all_photons_hit_energy = np.array(all_photons_hit_energy)
all_photons_time = np.array(all_photons_time)
# Data division
num_total_datasets = len(all_electrons_hit_energy)
num_train = int(0.8 * num_total_datasets)
num_val = int(0.1 * num_total_datasets)
num_test = num_total_datasets - num_train - num_val
# Split into training, validation, and test sets
train_electrons_hit_energy = all_electrons_hit_energy[:num_train]
train_electrons_time = all_electrons_time[:num_train]
train_photons_hit_energy = all_photons_hit_energy[:num_train]
train_photons_time = all_photons_time[:num_train]
val_electrons_hit_energy = all_electrons_hit_energy[num_train:num_train+num_val]
val_electrons_time = all_electrons_time[num_train:num_train+num_val]
val_photons_hit_energy = all_photons_hit_energy[num_train:num_train+num_val]
val_photons_time = all_photons_time[num_train:num_train+num_val]
test_electrons_hit_energy = all_electrons_hit_energy[num_train+num_val:]
test_electrons_time = all_electrons_time[num_train+num_val:]
test_photons_hit_energy = all_photons_hit_energy[num_train+num_val:]
test_photons_time = all_photons_time[num_train+num_val:]
# Convert data to PyTorch tensors
train_electrons_hit_energy_tensor = torch.FloatTensor(train_electrons_hit_energy)
train_electrons_time_tensor = torch.FloatTensor(train_electrons_time)
train_photons_hit_energy_tensor = torch.FloatTensor(train_photons_hit_energy)
train_photons_time_tensor = torch.FloatTensor(train_photons_time)
val_electrons_hit_energy_tensor = torch.FloatTensor(val_electrons_hit_energy)
val_electrons_time_tensor = torch.FloatTensor(val_electrons_time)
val_photons_hit_energy_tensor = torch.FloatTensor(val_photons_hit_energy)
val_photons_time_tensor = torch.FloatTensor(val_photons_time)
test_electrons_hit_energy_tensor = torch.FloatTensor(test_electrons_hit_energy)
test_electrons_time_tensor = torch.FloatTensor(test_electrons_time)
test_photons_hit_energy_tensor = torch.FloatTensor(test_photons_hit_energy)
test_photons_time_tensor = torch.FloatTensor(test_photons_time)
# Concatenate hit energy and time matrices along the channel dimension
train_electrons_data = torch.stack((train_electrons_hit_energy_tensor, train_electrons_time_tensor), dim=1)
train_photons_data = torch.stack((train_photons_hit_energy_tensor, train_photons_time_tensor), dim=1)
val_electrons_data = torch.stack((val_electrons_hit_energy_tensor, val_electrons_time_tensor), dim=1)
val_photons_data = torch.stack((val_photons_hit_energy_tensor, val_photons_time_tensor), dim=1)
test_electrons_data = torch.stack((test_electrons_hit_energy_tensor, test_electrons_time_tensor), dim=1)
test_photons_data = torch.stack((test_photons_hit_energy_tensor, test_photons_time_tensor), dim=1)
train_data = torch.cat((train_electrons_data, train_photons_data), dim=0)
val_data = torch.cat((val_electrons_data, val_photons_data), dim=0)
test_data = torch.cat((test_electrons_data, test_photons_data), dim=0)
train_labels = torch.cat((torch.zeros(train_electrons_data.size(0)), torch.ones(train_photons_data.size(0))))
val_labels = torch.cat((torch.zeros(val_electrons_data.size(0)), torch.ones(val_photons_data.size(0))))
test_labels = torch.cat((torch.zeros(test_electrons_data.size(0)), torch.ones(test_photons_data.size(0))))
from torch.utils.data import Dataset, DataLoader
class AugmentedDataset(Dataset):
def __init__(self, data, labels, transform=None):
self.data = torch.tensor(data, dtype=torch.float32) # Convert to PyTorch tensor
self.labels = torch.tensor(labels, dtype=torch.long) # Convert to PyTorch tensor
self.transform = transform
def __len__(self):
return len(self.labels)
def __getitem__(self, idx):
image = self.data[idx]
label = self.labels[idx]
if self.transform:
image = self.transform(image)
return image, label
transformations = transforms.Compose([
RandomApply([RandomChoice([
RandomRotation(15),
RandomHorizontalFlip(),
RandomVerticalFlip(),
RandomAffine(degrees=0, translate=(0.1, 0.1)),
RandomGrayscale(p=0.1)
])], p=0.8)
])
train_dataset = AugmentedDataset(train_data, train_labels, transform=transformations)
val_dataset = AugmentedDataset(val_data, val_labels, transform=None)
test_dataset = AugmentedDataset(test_data, test_labels, transform=None)
batch_size = 32
train_loader = DataLoader(train_dataset, batch_size=batch_size, shuffle=True)
val_loader = DataLoader(val_dataset, batch_size=batch_size, shuffle=False)
test_loader = DataLoader(test_dataset, batch_size=batch_size, shuffle=False)
class ResNet15(nn.Module):
def __init__(self):
super(ResNet15, self).__init__()
self.conv1 = nn.Conv2d(in_channels=2, out_channels=64, kernel_size=3, stride=1, padding=1)
self.bn1 = nn.BatchNorm2d(64)
self.relu = nn.ReLU(inplace=True)
self.maxpool = nn.MaxPool2d(kernel_size=2, stride=2)
self.conv2 = nn.Conv2d(64, 128, kernel_size=3, stride=1, padding=1)
self.bn2 = nn.BatchNorm2d(128)
self.fc = nn.Linear(128 * 8 * 8, 2) # Assuming 32x32 input size and 2 output classes
def forward(self, x):
# Reshape input to remove the extra dimension if present
if x.dim() == 5:
x = x.squeeze(2) # Remove the extra dimension
x = self.conv1(x)
x = self.bn1(x)
x = self.relu(x)
x = self.maxpool(x)
x = self.conv2(x)
x = self.bn2(x)
x = self.relu(x)
x = self.maxpool(x)
x = torch.flatten(x, 1)
x = self.fc(x)
return x
model = ResNet15()
criterion = nn.CrossEntropyLoss()
optimizer = optim.Adam(model.parameters(), lr=0.001, weight_decay=1e-5)
optimizer = optim.Adam(model.parameters(), lr=0.001, weight_decay=1e-5)
lambda_l1 = 1e-4
def l1_regularization(model, lambda_l1):
l1_loss = 0
for param in model.parameters():
l1_loss += torch.sum(torch.abs(param))
return lambda_l1 * l1_loss
# Prepare dataset (replace with your actual data)
X = np.array(train_data) # Your training data
y = np.array(train_labels) # Your training labels
# K-Fold Cross-Validation
k = 5
kf = KFold(n_splits=k, shuffle=True, random_state=42)
fold_results = []
for fold, (train_indices, val_indices) in enumerate(kf.split(X)):
print(f"Fold {fold + 1}")
# Create train and validation subsets
train_data_fold = X[train_indices]
train_labels_fold = y[train_indices]
val_data_fold = X[val_indices]
val_labels_fold = y[val_indices]
# Create datasets and dataloaders for the current fold
train_dataset = AugmentedDataset(train_data_fold, train_labels_fold, transform=transformations)
val_dataset = AugmentedDataset(val_data_fold, val_labels_fold, transform=None)
train_loader = DataLoader(train_dataset, batch_size=32, shuffle=True)
val_loader = DataLoader(val_dataset, batch_size=32, shuffle=False)
# Initialize model, criterion, and optimizer
model = ResNet15()
criterion = nn.CrossEntropyLoss()
optimizer = optim.Adam(model.parameters(), lr=0.001, weight_decay=1e-5)
num_epochs = 100
train_losses = []
train_accuracies = []
val_losses = []
val_accuracies = []
lambda_l1 = 1e-5 # Set L1 regularization parameter
for epoch in range(num_epochs):
train_loss = 0.0
train_correct = 0
total_train = 0
model.train()
for inputs, labels in train_loader:
optimizer.zero_grad()
outputs = model(inputs)
loss = criterion(outputs, labels.long())
l1_loss = l1_regularization(model, lambda_l1)
total_loss = loss + l1_loss
total_loss.backward()
optimizer.step()
train_loss += total_loss.item()
_, predicted = torch.max(outputs, 1)
total_train += labels.size(0)
train_correct += (predicted == labels).sum().item()
train_losses.append(train_loss / len(train_loader))
train_accuracies.append(train_correct / total_train)
val_loss = 0.0
val_correct = 0
total_val = 0
model.eval()
with torch.no_grad():
for inputs, labels in val_loader:
outputs = model(inputs)
loss = criterion(outputs, labels.long())
l1_loss = l1_regularization(model, lambda_l1)
val_loss += (loss + l1_loss).item()
_, predicted = torch.max(outputs, 1)
total_val += labels.size(0)
val_correct += (predicted == labels).sum().item()
val_losses.append(val_loss / len(val_loader))
val_accuracies.append(val_correct / total_val)
print(f"Epoch [{epoch+1}/{num_epochs}], "
f"Train Loss: {train_losses[-1]:.4f}, Train Accuracy: {train_accuracies[-1]:.4f}, "
f"Val Loss: {val_losses[-1]:.4f}, Val Accuracy: {val_accuracies[-1]:.4f}")
# Store results for this fold
fold_results.append({
'train_loss': np.mean(train_losses),
'train_accuracy': np.mean(train_accuracies),
'val_loss': np.mean(val_losses),
'val_accuracy': np.mean(val_accuracies)
})
# Save the model for this fold
torch.save(model.state_dict(), f'resnet15_fold_{fold + 1}.pth')
avg_train_loss = np.mean([result['train_loss'] for result in fold_results])
avg_train_accuracy = np.mean([result['train_accuracy'] for result in fold_results])
avg_val_loss = np.mean([result['val_loss'] for result in fold_results])
avg_val_accuracy = np.mean([result['val_accuracy'] for result in fold_results])
print(f"Average Training Loss: {avg_train_loss:.4f}")
print(f"Average Training Accuracy: {avg_train_accuracy:.4f}")
print(f"Average Validation Loss: {avg_val_loss:.4f}")
print(f"Average Validation Accuracy: {avg_val_accuracy:.4f}")
plt.figure(figsize=(12, 5))
plt.subplot(1, 2, 1)
plt.plot(range(num_epochs), train_losses, label='Train Loss')
plt.plot(range(num_epochs), val_losses, label='Validation Loss')
plt.xlabel('Epochs')
plt.ylabel('Loss')
plt.legend()
plt.subplot(1, 2, 2)
plt.plot(range(num_epochs), train_accuracies, label='Train Accuracy')
plt.plot(range(num_epochs), val_accuracies, label='Validation Accuracy')
plt.xlabel('Epochs')
plt.ylabel('Accuracy')
plt.legend()
plt.show()
# Evaluate on test data
model.eval()
test_correct = 0
total_test = 0
test_predictions = []
test_targets = []
with torch.no_grad():
for inputs, labels in test_loader:
outputs = model(inputs)
_, predicted = torch.max(outputs, 1)
total_test += labels.size(0)
test_correct += (predicted == labels).sum().item()
test_predictions.extend(predicted.cpu().numpy())
test_targets.extend(labels.cpu().numpy())
test_accuracy = test_correct / total_test
print(f'Test Accuracy: {test_accuracy:.4f}')
from sklearn.metrics import classification_report, confusion_matrix
print("Confusion Matrix:")
print(confusion_matrix(test_targets, test_predictions))
print("\nClassification Report:")
print(classification_report(test_targets, test_predictions, target_names=["Electron", "Photon"]))
print("This is the code for the Testing ")
import random
def generate_random_test_cases(num_cases, img_size=32):
test_cases = []
labels = []
for _ in range(num_cases):
is_photon = random.choice([True, False])
if is_photon:
photons_hit_energy = np.random.rand(img_size, img_size)
photons_time = np.random.rand(img_size, img_size)
test_cases.append(np.stack((photons_hit_energy, photons_time), axis=0))
labels.append(1)
else:
electrons_hit_energy = np.random.rand(img_size, img_size)
electrons_time = np.random.rand(img_size, img_size)
test_cases.append(np.stack((electrons_hit_energy, electrons_time), axis=0))
labels.append(0)
return np.array(test_cases), np.array(labels)
num_test_cases = 10
test_inputs, test_labels = generate_random_test_cases(num_test_cases)
test_inputs_tensor = torch.FloatTensor(test_inputs)
model.eval()
with torch.no_grad():
outputs = model(test_inputs_tensor)
_, predicted = torch.max(outputs, 1)
predicted_labels = predicted.cpu().numpy()
for i in range(num_test_cases):
particle_type = "Photon" if predicted_labels[i] == 1 else "Electron"
true_type = "Photon" if test_labels[i] == 1 else "Electron"
print(f"Test Case {i+1}: Predicted: {particle_type}, True Label: {true_type}")
print("The code ends here ")