Provenance, database connection #74
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| name: Run snpit_utils Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| workflow_dispatch: | |
| jobs: | |
| tests: | |
| name: run snpit_utils tests in docker container | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Dump docker logs on failure | |
| if: failure() | |
| uses: jwalton/gh-docker-logs@v2 | |
| - name: checkout code | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: run ruff | |
| uses: astral-sh/ruff-action@v3 | |
| - name: log into github container registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: cleanup | |
| run: | | |
| # try to save HDD space on the runner by removing some unneeded stuff | |
| # ref: https://github.com/actions/runner-images/issues/2840#issuecomment-790492173 | |
| sudo rm -rf /usr/share/dotnet | |
| sudo rm -rf /opt/ghc | |
| sudo rm -rf "/usr/local/share/boost" | |
| sudo rm -rf "$AGENT_TOOLSDIRECTORY" | |
| - name: pull environment archive | |
| run: | | |
| cd /home/runner/work/snpit_utils | |
| git clone https://github.com/Roman-Supernova-PIT/environment.git | |
| # snpit_utils tests don't actually use the photometry test data, | |
| # but the docker-compose file needs the directory | |
| mkdir photometry_test_data | |
| - name: pull docker images | |
| run: | | |
| cd /home/runner/work/snpit_utils/environment/test-docker-environment | |
| docker compose pull mailhog postgres webserver shell | |
| - name: run test | |
| run: | | |
| cd /home/runner/work/snpit_utils/environment/test-docker-environment | |
| docker compose up -d webserver shell | |
| echo "--------" | |
| docker compose exec shell bash -c 'cd /home && ls -lF' | |
| echo "--------" | |
| docker compose exec shell bash -c 'cd /home/snpit_utils && ls -lF' | |
| echo "--------" | |
| docker compose exec shell bash -c 'cd /home/snpit_utils && pip install -e .[test]' | |
| docker compose exec shell bash -c 'cd /home/snpit_utils/snpit_utils/tests && SNPIT_CONFIG=test_snpit_utils.yaml pytest -v' | |
| docker compose down -v |