RRes ETL: troubleshooting large vegetables with new initialiser.

marco-brandizi · marco-brandizi · commit 1ef014f1dae3 · 2025-06-04T22:25:51.000+01:00
diff --git a/rres-endpoints/config/datasets/vegetables-premium-common.sh b/rres-endpoints/config/datasets/vegetables-premium-common.sh
@@ -14,4 +14,4 @@ export KETL_HAS_NEO4J=true
 export KETL_NEO_VERSION='5.26.0'
 export NEO4J_HOME="$KNET_SOFTWARE/neo4j-community-$KETL_NEO_VERSION-etl-test"
 
-export JAVA_TOOL_OPTIONS="-Xmx64G" # Default is huge, we don't need it here
+export JAVA_TOOL_OPTIONS="-Xmx64G" # Default is huge, we don't need it here
diff --git a/rres-endpoints/config/snakemake/slurm/config.yaml b/rres-endpoints/config/snakemake/slurm/config.yaml
@@ -1,2 +1,2 @@
 jobs: 16
-cluster: "sbatch --chdir=/home/data/knetminer/software/knetminer-backend/rres-endpoints --partition=largemem --mem=2048g --cpus-per-task=32 --qos=largemem --time=1-0:0:0  -o .snakemake/log/slurm-{rule}.out -e .snakemake/log/slurm-{rule}.out"
+cluster: "sbatch --chdir=/home/data/knetminer/software/knetminer-backend/rres-endpoints --partition=largemem --mem=500g --cpus-per-task=16 --qos=largemem --time=1-0:0:0  -o .snakemake/log/slurm-{rule}.out -e .snakemake/log/slurm-{rule}.out"

Original file line number	Diff line number	Diff line change
`@@ -1,2 +1,2 @@`
`1`	`1`	`jobs: 16`
`2`		`-cluster: "sbatch --chdir=/home/data/knetminer/software/knetminer-backend/rres-endpoints --partition=largemem --mem=2048g --cpus-per-task=32 --qos=largemem --time=1-0:0:0 -o .snakemake/log/slurm-{rule}.out -e .snakemake/log/slurm-{rule}.out"`
	`2`	`+cluster: "sbatch --chdir=/home/data/knetminer/software/knetminer-backend/rres-endpoints --partition=largemem --mem=500g --cpus-per-task=16 --qos=largemem --time=1-0:0:0 -o .snakemake/log/slurm-{rule}.out -e .snakemake/log/slurm-{rule}.out"`