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Created config to build plants-lite v62-RC1
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. "$KETL_HOME/config/datasets/${KETL_DATASET_ID}-common.sh"
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# These files are passed to the Ondex Metadata descriptor tool.
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# https://github.com/Rothamsted/knetbuilder/tree/master/ondex-knet-builder/modules/rdf-export-2
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#
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datasetId = plants-lite
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datasetAccession = KnetMiner:Plants-Lite
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datasetTitle = Knetminer's knowledge graph about plants
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datasetDescription = \
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Knetminer is a gene discovery platform, which allows for exploring knwoledge graphs computed \
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from common plant biology data, such as ENSEMBL, UniProt, TAIR, PUBMED and more.\n\
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The plants lite dataset contains information about the several gramineae species, which is also linked \
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to embedded data about the Arabidopsis model organism.\n\
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This is the free edition, which includes Arabidopsis, rice, wheat, camelina and rapeseed.
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datasetVersion = 62
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# TODO: better URLs
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datasetURL = https://knetminer.com/about
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datasetNeo4jBrowserURL = <https://neo-dev.knetminer.com:7473>
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datasetNeo4jBOLTURL = <bolt://neo-dev.knetminer.com:7687>

rres-endpoints/config/datasets/plants-lite-v61-RC1-cfg.sh

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export KETL_REL_NOTES="\n\
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---------------------------\n\
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Version ${KETL_DATASET_VERSION} 04-08-2025:\n\
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Version ${KETL_DATASET_VERSION} 20-01-2026:\n\
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\n\
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- New Arabidopsis Thaliana (Thale Cress) pangenome nodes with gene presence/absence variation (PAV) data.\n\
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- New gene-trait associations extracted with LLM from recent publications.\n\
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---------------------------\n\
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Version v61-RC1 04-08-2025:\n\
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\n\
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- New semantic motif categories. Read more: https://github.com/KnetMiner/knetminer-schemas/tree/main/semantic-motif-taxonomy/knet-motif-categories-doc\n\
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- Removed redundant alternative names for Arabidopsis Thaliana (Thale Cress).\n\
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export KETL_REL_NOTES="\n\
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---------------------------\n\
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Version ${KETL_DATASET_VERSION} 20-01-2026:\n\
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\n\
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- New Arabidopsis Thaliana (Thale Cress) pangenome nodes with gene presence/absence variation (PAV) data.\n\
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- New gene-trait association extracted with LLM from recent publications.\n\
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---------------------------\n\
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Version v61-RC1 04-08-2025:\n\
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\n\
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- New semantic motif categories. Read more: https://github.com/KnetMiner/knetminer-schemas/tree/main/semantic-motif-taxonomy/knet-motif-categories-doc\n\
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- Removed redundant alternative names for Arabidopsis Thaliana (Thale Cress).\n\
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- Fixed character encoding for non-English letters is publication titles/authors/etc.\n\
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- Replaced hash code identifiers in Phenotype nodes with short LLM-generated labels. Read more: https://github.com/KnetMiner/knetML/tree/main/Entity_Relation_extraction/bedrock_phenotype_title\n\
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- Added release notes to the graphs!\n\
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---------------------------\n\
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"
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. "$KETL_HOME/config/datasets/${KETL_DATASET_ID}-${KETL_DATASET_VERSION_NUM}-cfg.sh"

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