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When building with ENABLE_ZOLTAN=ON, it seems like Parmetis arguments are not setup correctly to handle empty parts. Not sure if this is in our code or Zoltan code.
See log file from the capVol_CubeMds3D-4 test case:
120: MeshAdapt: --iter 2 of shape correction loop: #bad elements 2658
120:
120: MeshAdapt: snapped in 0.000654 seconds: 0 targets, 0 non-layer snaps
120:
120: MeshAdapt: --fixLargeAngles in 0.227842 seconds: #bad elements 2010
120: APF warning: 1 empty parts
120: APF warning: 1 empty parts
120: APF warning: 1 empty parts
120:
120: MeshAdapt: --fixShortEdgeElements in 4.683730 seconds: #bad elements 1051
120: PARMETIS ERROR vwgt is NULL.
120: PARMETIS ERROR: sum weight for constraint 0 is zero.
120: PARMETIS ERROR: sum weight for constraint 0 is zero.
120: PARMETIS ERROR: sum weight for constraint 0 is zero.
Ideally parmetis should be able to recover us from empty parts. e.g. the METIS partitioner can handle and fix empty parts:
108: MeshAdapt: --fixLargeAngles in 0.279525 seconds: #bad elements 2146
108: APF warning: 1 empty parts
108:
108: MeshAdapt: --fixShortEdgeElements in 5.058107 seconds: #bad elements 1113
108: METIS: weights are not supported
108: METIS: localized graph in 0.005991 seconds
108: METIS: partitioned in 0.003824 seconds
108: METIS: fixing up mapping
108: METIS: remapped in 0.000148 seconds
108: METIS: scattered in 0.000097 seconds
108: METIS: planned in 0.000120 seconds
108: METIS: migrated in 0.058503 seconds
108: METIS: balanced in 0.088204 seconds
108:
108: MeshAdapt: --percent change in number of bad elements 0.600646