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doped.io - #154

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IO_refactor
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doped.io#154
kavanase wants to merge 23 commits into
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IO_refactor

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This PR implements a refactoring of calculation I/O in doped, moving all calculator-specific (e.g. VASP) code to a doped.io subpackage, where each calculator then has its own subpackage as doped.io.<calculator> with inputs, outputs and optionally utils sub-modules (e.g. doped.io.vasp.outputs). A unified interface is then used for calculation inputs and outputs, streamlining the addition of new calculators (Quantum Espresso, GPAW, FHI-aims, ...) to doped.

kavanase added 21 commits July 20, 2026 18:19
@kavanase kavanase added the enhancement New feature or request label Jul 20, 2026
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kavanase marked this pull request as draft July 20, 2026 17:28
@kavanase kavanase changed the title Draft: doped.io doped.io Jul 20, 2026
@SMTG-Bham SMTG-Bham deleted a comment from coderabbitai Bot Jul 20, 2026
kavanase and others added 2 commits July 22, 2026 12:25
…develop merge)

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
# Conflicts:
#	doped/analysis.py
#	doped/core.py
#	doped/utils/parsing.py
#	doped/vasp.py
#	examples/GGA_workflow_tutorial.ipynb
#	examples/Se/F_i_C2_-1_20Å_Stenciled_POSCAR
#	examples/Se/F_i_C2_1_20Å_Stenciled_POSCAR
#	examples/Se/H_Se_-1_20Å_Stenciled_POSCAR
#	examples/Se/H_Se_0_20Å_Stenciled_POSCAR
#	examples/Se/Se_20Å_Supercell_POSCAR
#	examples/Se/Se_i_C2_-1_20Å_Stenciled_POSCAR
#	examples/Se/Se_i_C2_-2_20Å_Stenciled_POSCAR
#	examples/Se/Se_i_C2_0_20Å_Stenciled_POSCAR
#	examples/Se/v_Se_-1_20Å_Stenciled_POSCAR
#	examples/Se/v_Se_-2_20Å_Stenciled_POSCAR
#	examples/Se/v_Se_0_20Å_Stenciled_POSCAR
#	examples/chemical_potentials_tutorial.ipynb
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