Merge pull request #853 from mnagaso/io_server

HDF5 collective output

Author: danielpeter

DATA/Par_file

@@ -297,6 +297,7 @@ OUTPUT_SEISMOS_SAC_ALPHANUM     = .false.
 OUTPUT_SEISMOS_SAC_BINARY       = .false.
 OUTPUT_SEISMOS_ASDF             = .false.
 OUTPUT_SEISMOS_3D_ARRAY         = .false.
+OUTPUT_SEISMOS_HDF5             = .false.
 
 # rotate seismograms to Radial-Transverse-Z or use default North-East-Z reference frame
 ROTATE_SEISMOGRAMS_RT           = .false.
@@ -430,3 +431,7 @@ ADIOS_FOR_KERNELS               = .true.
 ADIOS_FOR_MODELS                = .true.
 ADIOS_FOR_UNDO_ATTENUATION      = .true.
 
+# HDF5 Database I/O
+# (note the flags for HDF5 and ADIOS are mutually exclusive, only one can be used)
+HDF5_ENABLED                    = .false.
+

EXAMPLES/benchmarks/attenuation_benchmark_GJI_2002_versus_normal_modes/DATA/Par_file

@@ -297,6 +297,7 @@ OUTPUT_SEISMOS_SAC_ALPHANUM     = .false.
 OUTPUT_SEISMOS_SAC_BINARY       = .false.
 OUTPUT_SEISMOS_ASDF             = .false.
 OUTPUT_SEISMOS_3D_ARRAY         = .false.
+OUTPUT_SEISMOS_HDF5             = .false.
 
 # rotate seismograms to Radial-Transverse-Z or use default North-East-Z reference frame
 ROTATE_SEISMOGRAMS_RT           = .true.
@@ -430,3 +431,7 @@ ADIOS_FOR_KERNELS               = .true.
 ADIOS_FOR_MODELS                = .true.
 ADIOS_FOR_UNDO_ATTENUATION      = .true.
 
+# HDF5 Database I/O
+# (note the flags for HDF5 and ADIOS are mutually exclusive, only one can be used)
+HDF5_ENABLED                    = .false.
+

EXAMPLES/benchmarks/prem_ani_noocean_Q_Cowling_Bolivia_9s/SEMD/DATA/Par_file

@@ -297,6 +297,7 @@ OUTPUT_SEISMOS_SAC_ALPHANUM     = .false.
 OUTPUT_SEISMOS_SAC_BINARY       = .false.
 OUTPUT_SEISMOS_ASDF             = .false.
 OUTPUT_SEISMOS_3D_ARRAY         = .false.
+OUTPUT_SEISMOS_HDF5             = .false.
 
 # rotate seismograms to Radial-Transverse-Z or use default North-East-Z reference frame
 ROTATE_SEISMOGRAMS_RT           = .false.
@@ -430,3 +431,7 @@ ADIOS_FOR_KERNELS               = .true.
 ADIOS_FOR_MODELS                = .true.
 ADIOS_FOR_UNDO_ATTENUATION      = .true.
 
+# HDF5 Database I/O
+# (note the flags for HDF5 and ADIOS are mutually exclusive, only one can be used)
+HDF5_ENABLED                    = .false.
+

EXAMPLES/benchmarks/prem_ani_noocean_Q_Cowling_Vanuatu/SEMD/DATA/Par_file

@@ -297,6 +297,7 @@ OUTPUT_SEISMOS_SAC_ALPHANUM     = .false.
 OUTPUT_SEISMOS_SAC_BINARY       = .false.
 OUTPUT_SEISMOS_ASDF             = .false.
 OUTPUT_SEISMOS_3D_ARRAY         = .false.
+OUTPUT_SEISMOS_HDF5             = .false.
 
 # rotate seismograms to Radial-Transverse-Z or use default North-East-Z reference frame
 ROTATE_SEISMOGRAMS_RT           = .false.
@@ -430,3 +431,7 @@ ADIOS_FOR_KERNELS               = .true.
 ADIOS_FOR_MODELS                = .true.
 ADIOS_FOR_UNDO_ATTENUATION      = .true.
 
+# HDF5 Database I/O
+# (note the flags for HDF5 and ADIOS are mutually exclusive, only one can be used)
+HDF5_ENABLED                    = .false.
+

EXAMPLES/benchmarks/prem_iso_noocean_Q_Cowling_Vanuatu/SEMD/DATA/Par_file

@@ -297,6 +297,7 @@ OUTPUT_SEISMOS_SAC_ALPHANUM     = .false.
 OUTPUT_SEISMOS_SAC_BINARY       = .false.
 OUTPUT_SEISMOS_ASDF             = .false.
 OUTPUT_SEISMOS_3D_ARRAY         = .false.
+OUTPUT_SEISMOS_HDF5             = .false.
 
 # rotate seismograms to Radial-Transverse-Z or use default North-East-Z reference frame
 ROTATE_SEISMOGRAMS_RT           = .false.
@@ -430,3 +431,7 @@ ADIOS_FOR_KERNELS               = .true.
 ADIOS_FOR_MODELS                = .true.
 ADIOS_FOR_UNDO_ATTENUATION      = .true.
 
+# HDF5 Database I/O
+# (note the flags for HDF5 and ADIOS are mutually exclusive, only one can be used)
+HDF5_ENABLED                    = .false.
+

EXAMPLES/benchmarks/undo_attenuation_benchmark_GJI_2016/DATA/Par_file

@@ -297,6 +297,7 @@ OUTPUT_SEISMOS_SAC_ALPHANUM     = .false.
 OUTPUT_SEISMOS_SAC_BINARY       = .false.
 OUTPUT_SEISMOS_ASDF             = .false.
 OUTPUT_SEISMOS_3D_ARRAY         = .false.
+OUTPUT_SEISMOS_HDF5             = .false.
 
 # rotate seismograms to Radial-Transverse-Z or use default North-East-Z reference frame
 ROTATE_SEISMOGRAMS_RT           = .false.
@@ -430,3 +431,7 @@ ADIOS_FOR_KERNELS               = .true.
 ADIOS_FOR_MODELS                = .true.
 ADIOS_FOR_UNDO_ATTENUATION      = .true.
 
+# HDF5 Database I/O
+# (note the flags for HDF5 and ADIOS are mutually exclusive, only one can be used)
+HDF5_ENABLED                    = .false.
+

EXAMPLES/global_PREM_kernels/amplitude/DATA/Par_file

@@ -297,6 +297,7 @@ OUTPUT_SEISMOS_SAC_ALPHANUM     = .false.
 OUTPUT_SEISMOS_SAC_BINARY       = .false.
 OUTPUT_SEISMOS_ASDF             = .false.
 OUTPUT_SEISMOS_3D_ARRAY         = .false.
+OUTPUT_SEISMOS_HDF5             = .false.
 
 # rotate seismograms to Radial-Transverse-Z or use default North-East-Z reference frame
 ROTATE_SEISMOGRAMS_RT           = .false.
@@ -430,3 +431,7 @@ ADIOS_FOR_KERNELS               = .true.
 ADIOS_FOR_MODELS                = .true.
 ADIOS_FOR_UNDO_ATTENUATION      = .true.
 
+# HDF5 Database I/O
+# (note the flags for HDF5 and ADIOS are mutually exclusive, only one can be used)
+HDF5_ENABLED                    = .false.
+

EXAMPLES/global_PREM_kernels/traveltime/DATA/Par_file

@@ -297,6 +297,7 @@ OUTPUT_SEISMOS_SAC_ALPHANUM     = .false.
 OUTPUT_SEISMOS_SAC_BINARY       = .false.
 OUTPUT_SEISMOS_ASDF             = .false.
 OUTPUT_SEISMOS_3D_ARRAY         = .false.
+OUTPUT_SEISMOS_HDF5             = .false.
 
 # rotate seismograms to Radial-Transverse-Z or use default North-East-Z reference frame
 ROTATE_SEISMOGRAMS_RT           = .false.
@@ -430,3 +431,7 @@ ADIOS_FOR_KERNELS               = .true.
 ADIOS_FOR_MODELS                = .true.
 ADIOS_FOR_UNDO_ATTENUATION      = .true.
 
+# HDF5 Database I/O
+# (note the flags for HDF5 and ADIOS are mutually exclusive, only one can be used)
+HDF5_ENABLED                    = .false.
+

EXAMPLES/global_s362ani_shakemovie/DATA/Par_file

@@ -297,6 +297,7 @@ OUTPUT_SEISMOS_SAC_ALPHANUM     = .false.
 OUTPUT_SEISMOS_SAC_BINARY       = .true.
 OUTPUT_SEISMOS_ASDF             = .false.
 OUTPUT_SEISMOS_3D_ARRAY         = .false.
+OUTPUT_SEISMOS_HDF5             = .false.
 
 # rotate seismograms to Radial-Transverse-Z or use default North-East-Z reference frame
 ROTATE_SEISMOGRAMS_RT           = .false.
@@ -430,3 +431,7 @@ ADIOS_FOR_KERNELS               = .true.
 ADIOS_FOR_MODELS                = .true.
 ADIOS_FOR_UNDO_ATTENUATION      = .true.
 
+# HDF5 Database I/O
+# (note the flags for HDF5 and ADIOS are mutually exclusive, only one can be used)
+HDF5_ENABLED                    = .false.
+

EXAMPLES/global_small/DATA/Par_file

@@ -297,6 +297,7 @@ OUTPUT_SEISMOS_SAC_ALPHANUM     = .false.
 OUTPUT_SEISMOS_SAC_BINARY       = .true.
 OUTPUT_SEISMOS_ASDF             = .false.
 OUTPUT_SEISMOS_3D_ARRAY         = .false.
+OUTPUT_SEISMOS_HDF5             = .false.
 
 # rotate seismograms to Radial-Transverse-Z or use default North-East-Z reference frame
 ROTATE_SEISMOGRAMS_RT           = .false.
@@ -430,3 +431,7 @@ ADIOS_FOR_KERNELS               = .true.
 ADIOS_FOR_MODELS                = .true.
 ADIOS_FOR_UNDO_ATTENUATION      = .true.
 
+# HDF5 Database I/O
+# (note the flags for HDF5 and ADIOS are mutually exclusive, only one can be used)
+HDF5_ENABLED                    = .false.
+