MNT: Clean up compile_all_models.sh script

Author: pauldmccarthy

compile_all_models.sh

@@ -3,35 +3,35 @@ if [ "x$FSLDIR" == "x" ]; then
   echo ""
   echo "Please set environment variable FSLDIR before compiling"
   echo ""
-	exit 1
+  exit 1
 fi
 if [ "x$FSLDEVDIR" == "x" ]; then
   echo ""
   echo "Please set environment variable FSLDEVDIR before compiling"
   echo ""
-	exit 1
+  exit 1
 fi
-if [ "x$CUDA" == "x" ]; then
+
+if [ $(type -P nvcc) ]; then
   echo ""
-  echo "Please set enviroment variable CUDA with the path to the version of CUDA to use"
-  echo "For instance: export CUDA=/usr/local/cuda-8.0" 
+  echo "Please ensure that the nvcc compiler command is on your PATH"
+  echo "For instance: export PATH=/usr/local/cuda-8.0/bin:$PATH"
   echo ""
-	exit 1
+  exit 1
 fi
 
-. $FSLDIR/etc/fslconf/fsl.sh
-export FSLCONFDIR=$FSLDIR/config
-export FSLMACHTYPE=`$FSLDIR/etc/fslconf/fslmachtype.sh`
+. $FSLDIR/etc/fslconf/fsl-devel.sh
+
 
 set -e
 models=`ls mymodels -I utils`
 for m in $models; do
-    echo
-    echo ------------------------------
-    echo -------- Compiling $m --------
-    echo ------------------------------
-    echo
-    export modelname=$m
-    make cleanall
-    make install
+   echo
+   echo ------------------------------
+   echo -------- Compiling $m --------
+   echo ------------------------------
+   echo
+   export modelname=$m
+   make cleanall
+   make install
 done