Does CellBin support 10X Visium HD data?

[asmlgkj]

Hi,

Great work on CellBin! The unified framework for multi-platform spatial omics is really impressive.

I saw Visium HD H&E mouse lung example in Figure 1f of the paper. I'm wondering:

1. Does CellBin currently support Visium HD data processing?
2. If yes, is there any example data or tutorial available?
3. does it support cuda 13.0

Thanks!

[zhangyinffff]

Thank you for your interest in CellBin!

Yes, CellBin supports processing Visium HD data. To use it, you will need to convert your raw Visium HD data into the GEF format that CellBin requires.

For detailed, step-by-step instructions, please refer to the official Visium HD demo and operation guide on our GitHub repository:
👉 CellBin2 Visium HD Demo & Paper Resources
The example data from the related paper is also available in the same repository.

Regarding your technical setup: CellBin utilizes PyTorch. It is fully compatible with CUDA 13.0, provided your PyTorch installation is correctly configured to use it. You can verify this within your environment.

I hope this information is helpful for your work. Please feel free to ask if you have any more questions about the data conversion process or running CellBin.