From 709db12dcb6a7dff51d54145a92615fa830d838b Mon Sep 17 00:00:00 2001
From: verena <9377970+vpchung@users.noreply.github.com>
Date: Tue, 25 Nov 2025 12:05:05 -0800
Subject: [PATCH 01/11] update dependency versions

---
 poetry.lock    | 403 +++++++++++++++++++++++++++++++++----------------
 pyproject.toml |  21 ++-
 2 files changed, 281 insertions(+), 143 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index c32cc7b..4251d05 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand.
+# This file is automatically @generated by Poetry 2.2.1 and should not be changed by hand.
 
 [[package]]
 name = "anyio"
@@ -6,6 +6,7 @@ version = "4.3.0"
 description = "High level compatibility layer for multiple asynchronous event loop implementations"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "anyio-4.3.0-py3-none-any.whl", hash = "sha256:048e05d0f6caeed70d731f3db756d35dcc1f35747c8c403364a8332c630441b8"},
     {file = "anyio-4.3.0.tar.gz", hash = "sha256:f75253795a87df48568485fd18cdd2a3fa5c4f7c5be8e5e36637733fce06fed6"},
@@ -19,7 +20,7 @@ typing-extensions = {version = ">=4.1", markers = "python_version < \"3.11\""}
 
 [package.extras]
 doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"]
-test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"]
+test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17) ; platform_python_implementation == \"CPython\" and platform_system != \"Windows\""]
 trio = ["trio (>=0.23)"]
 
 [[package]]
@@ -28,6 +29,7 @@ version = "2.0.4"
 description = "Simple LRU cache for asyncio"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "async-lru-2.0.4.tar.gz", hash = "sha256:b8a59a5df60805ff63220b2a0c5b5393da5521b113cd5465a44eb037d81a5627"},
     {file = "async_lru-2.0.4-py3-none-any.whl", hash = "sha256:ff02944ce3c288c5be660c42dbcca0742b32c3b279d6dceda655190240b99224"},
@@ -42,6 +44,7 @@ version = "1.0.1"
 description = "Like atexit, but for asyncio"
 optional = false
 python-versions = ">=3.6"
+groups = ["main"]
 files = [
     {file = "asyncio-atexit-1.0.1.tar.gz", hash = "sha256:1d0c71544b8ee2c484d322844ee72c0875dde6f250c0ed5b6993592ab9f7d436"},
     {file = "asyncio_atexit-1.0.1-py3-none-any.whl", hash = "sha256:d93d5f7d5633a534abd521ce2896ed0fbe8de170bb1e65ec871d1c20eac9d376"},
@@ -56,6 +59,7 @@ version = "2.15.0"
 description = "Internationalization utilities"
 optional = false
 python-versions = ">=3.8"
+groups = ["docs"]
 files = [
     {file = "Babel-2.15.0-py3-none-any.whl", hash = "sha256:08706bdad8d0a3413266ab61bd6c34d0c28d6e1e7badf40a2cebe67644e2e1fb"},
     {file = "babel-2.15.0.tar.gz", hash = "sha256:8daf0e265d05768bc6c7a314cf1321e9a123afc328cc635c18622a2f30a04413"},
@@ -64,23 +68,13 @@ files = [
 [package.extras]
 dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"]
 
-[[package]]
-name = "backoff"
-version = "2.2.1"
-description = "Function decoration for backoff and retry"
-optional = false
-python-versions = ">=3.7,<4.0"
-files = [
-    {file = "backoff-2.2.1-py3-none-any.whl", hash = "sha256:63579f9a0628e06278f7e47b7d7d5b6ce20dc65c5e96a6f3ca99a6adca0396e8"},
-    {file = "backoff-2.2.1.tar.gz", hash = "sha256:03f829f5bb1923180821643f8753b0502c3b682293992485b0eef2807afa5cba"},
-]
-
 [[package]]
 name = "certifi"
 version = "2024.2.2"
 description = "Python package for providing Mozilla's CA Bundle."
 optional = false
 python-versions = ">=3.6"
+groups = ["main", "docs"]
 files = [
     {file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"},
     {file = "certifi-2024.2.2.tar.gz", hash = "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f"},
@@ -92,6 +86,7 @@ version = "3.3.2"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 optional = false
 python-versions = ">=3.7.0"
+groups = ["main", "docs"]
 files = [
     {file = "charset-normalizer-3.3.2.tar.gz", hash = "sha256:f30c3cb33b24454a82faecaf01b19c18562b1e89558fb6c56de4d9118a032fd5"},
     {file = "charset_normalizer-3.3.2-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:25baf083bf6f6b341f4121c2f3c548875ee6f5339300e08be3f2b2ba1721cdd3"},
@@ -191,6 +186,7 @@ version = "8.1.7"
 description = "Composable command line interface toolkit"
 optional = false
 python-versions = ">=3.7"
+groups = ["main", "docs"]
 files = [
     {file = "click-8.1.7-py3-none-any.whl", hash = "sha256:ae74fb96c20a0277a1d615f1e4d73c8414f5a98db8b799a7931d1582f3390c28"},
     {file = "click-8.1.7.tar.gz", hash = "sha256:ca9853ad459e787e2192211578cc907e7594e294c7ccc834310722b41b9ca6de"},
@@ -199,27 +195,18 @@ files = [
 [package.dependencies]
 colorama = {version = "*", markers = "platform_system == \"Windows\""}
 
-[[package]]
-name = "cloudpickle"
-version = "3.0.0"
-description = "Pickler class to extend the standard pickle.Pickler functionality"
-optional = false
-python-versions = ">=3.8"
-files = [
-    {file = "cloudpickle-3.0.0-py3-none-any.whl", hash = "sha256:246ee7d0c295602a036e86369c77fecda4ab17b506496730f2f576d9016fd9c7"},
-    {file = "cloudpickle-3.0.0.tar.gz", hash = "sha256:996d9a482c6fb4f33c1a35335cf8afd065d2a56e973270364840712d9131a882"},
-]
-
 [[package]]
 name = "colorama"
 version = "0.4.6"
 description = "Cross-platform colored terminal text."
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
+groups = ["main", "docs", "test"]
 files = [
     {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"},
     {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"},
 ]
+markers = {test = "sys_platform == \"win32\""}
 
 [[package]]
 name = "deprecated"
@@ -227,6 +214,7 @@ version = "1.2.14"
 description = "Python @deprecated decorator to deprecate old python classes, functions or methods."
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+groups = ["main"]
 files = [
     {file = "Deprecated-1.2.14-py2.py3-none-any.whl", hash = "sha256:6fac8b097794a90302bdbb17b9b815e732d3c4720583ff1b198499d78470466c"},
     {file = "Deprecated-1.2.14.tar.gz", hash = "sha256:e5323eb936458dccc2582dc6f9c322c852a775a27065ff2b0c4970b9d53d01b3"},
@@ -244,6 +232,8 @@ version = "1.2.1"
 description = "Backport of PEP 654 (exception groups)"
 optional = false
 python-versions = ">=3.7"
+groups = ["main", "test"]
+markers = "python_version == \"3.10\""
 files = [
     {file = "exceptiongroup-1.2.1-py3-none-any.whl", hash = "sha256:5258b9ed329c5bbdd31a309f53cbfb0b155341807f6ff7606a1e801a891b29ad"},
     {file = "exceptiongroup-1.2.1.tar.gz", hash = "sha256:a4785e48b045528f5bfe627b6ad554ff32def154f42372786903b7abcfe1aa16"},
@@ -258,6 +248,7 @@ version = "2.1.0"
 description = "Copy your docs directly to the gh-pages branch."
 optional = false
 python-versions = "*"
+groups = ["docs"]
 files = [
     {file = "ghp-import-2.1.0.tar.gz", hash = "sha256:9c535c4c61193c2df8871222567d7fd7e5014d835f97dc7b7439069e2413d343"},
     {file = "ghp_import-2.1.0-py3-none-any.whl", hash = "sha256:8337dd7b50877f163d4c0289bc1f1c7f127550241988d568c1db512c4324a619"},
@@ -271,20 +262,21 @@ dev = ["flake8", "markdown", "twine", "wheel"]
 
 [[package]]
 name = "googleapis-common-protos"
-version = "1.63.0"
+version = "1.72.0"
 description = "Common protobufs used in Google APIs"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
-    {file = "googleapis-common-protos-1.63.0.tar.gz", hash = "sha256:17ad01b11d5f1d0171c06d3ba5c04c54474e883b66b949722b4938ee2694ef4e"},
-    {file = "googleapis_common_protos-1.63.0-py2.py3-none-any.whl", hash = "sha256:ae45f75702f7c08b541f750854a678bd8f534a1a6bace6afe975f1d0a82d6632"},
+    {file = "googleapis_common_protos-1.72.0-py3-none-any.whl", hash = "sha256:4299c5a82d5ae1a9702ada957347726b167f9f8d1fc352477702a1e851ff4038"},
+    {file = "googleapis_common_protos-1.72.0.tar.gz", hash = "sha256:e55a601c1b32b52d7a3e65f43563e2aa61bcd737998ee672ac9b951cd49319f5"},
 ]
 
 [package.dependencies]
-protobuf = ">=3.19.5,<3.20.0 || >3.20.0,<3.20.1 || >3.20.1,<4.21.1 || >4.21.1,<4.21.2 || >4.21.2,<4.21.3 || >4.21.3,<4.21.4 || >4.21.4,<4.21.5 || >4.21.5,<5.0.0.dev0"
+protobuf = ">=3.20.2,<4.21.1 || >4.21.1,<4.21.2 || >4.21.2,<4.21.3 || >4.21.3,<4.21.4 || >4.21.4,<4.21.5 || >4.21.5,<7.0.0"
 
 [package.extras]
-grpc = ["grpcio (>=1.44.0,<2.0.0.dev0)"]
+grpc = ["grpcio (>=1.44.0,<2.0.0)"]
 
 [[package]]
 name = "griffe"
@@ -292,6 +284,7 @@ version = "0.45.0"
 description = "Signatures for entire Python programs. Extract the structure, the frame, the skeleton of your project, to generate API documentation or find breaking changes in your API."
 optional = false
 python-versions = ">=3.8"
+groups = ["docs"]
 files = [
     {file = "griffe-0.45.0-py3-none-any.whl", hash = "sha256:90fe5c90e1b0ca7dd6fee78f9009f4e01b37dbc9ab484a9b2c1578915db1e571"},
     {file = "griffe-0.45.0.tar.gz", hash = "sha256:85cb2868d026ea51c89bdd589ad3ccc94abc5bd8d5d948e3d4450778a2a05b4a"},
@@ -302,35 +295,37 @@ colorama = ">=0.4"
 
 [[package]]
 name = "h11"
-version = "0.14.0"
+version = "0.16.0"
 description = "A pure-Python, bring-your-own-I/O implementation of HTTP/1.1"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
+groups = ["main"]
 files = [
-    {file = "h11-0.14.0-py3-none-any.whl", hash = "sha256:e3fe4ac4b851c468cc8363d500db52c2ead036020723024a109d37346efaa761"},
-    {file = "h11-0.14.0.tar.gz", hash = "sha256:8f19fbbe99e72420ff35c00b27a34cb9937e902a8b810e2c88300c6f0a3b699d"},
+    {file = "h11-0.16.0-py3-none-any.whl", hash = "sha256:63cf8bbe7522de3bf65932fda1d9c2772064ffb3dae62d55932da54b31cb6c86"},
+    {file = "h11-0.16.0.tar.gz", hash = "sha256:4e35b956cf45792e4caa5885e69fba00bdbc6ffafbfa020300e549b208ee5ff1"},
 ]
 
 [[package]]
 name = "httpcore"
-version = "1.0.5"
+version = "1.0.9"
 description = "A minimal low-level HTTP client."
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
-    {file = "httpcore-1.0.5-py3-none-any.whl", hash = "sha256:421f18bac248b25d310f3cacd198d55b8e6125c107797b609ff9b7a6ba7991b5"},
-    {file = "httpcore-1.0.5.tar.gz", hash = "sha256:34a38e2f9291467ee3b44e89dd52615370e152954ba21721378a87b2960f7a61"},
+    {file = "httpcore-1.0.9-py3-none-any.whl", hash = "sha256:2d400746a40668fc9dec9810239072b40b4484b640a8c38fd654a024c7a1bf55"},
+    {file = "httpcore-1.0.9.tar.gz", hash = "sha256:6e34463af53fd2ab5d807f399a9b45ea31c3dfa2276f15a2c3f00afff6e176e8"},
 ]
 
 [package.dependencies]
 certifi = "*"
-h11 = ">=0.13,<0.15"
+h11 = ">=0.16"
 
 [package.extras]
 asyncio = ["anyio (>=4.0,<5.0)"]
 http2 = ["h2 (>=3,<5)"]
 socks = ["socksio (==1.*)"]
-trio = ["trio (>=0.22.0,<0.26.0)"]
+trio = ["trio (>=0.22.0,<1.0)"]
 
 [[package]]
 name = "httpx"
@@ -338,6 +333,7 @@ version = "0.27.0"
 description = "The next generation HTTP client."
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "httpx-0.27.0-py3-none-any.whl", hash = "sha256:71d5465162c13681bff01ad59b2cc68dd838ea1f10e51574bac27103f00c91a5"},
     {file = "httpx-0.27.0.tar.gz", hash = "sha256:a0cb88a46f32dc874e04ee956e4c2764aba2aa228f650b06788ba6bda2962ab5"},
@@ -351,7 +347,7 @@ idna = "*"
 sniffio = "*"
 
 [package.extras]
-brotli = ["brotli", "brotlicffi"]
+brotli = ["brotli ; platform_python_implementation == \"CPython\"", "brotlicffi ; platform_python_implementation != \"CPython\""]
 cli = ["click (==8.*)", "pygments (==2.*)", "rich (>=10,<14)"]
 http2 = ["h2 (>=3,<5)"]
 socks = ["socksio (==1.*)"]
@@ -362,6 +358,7 @@ version = "3.7"
 description = "Internationalized Domain Names in Applications (IDNA)"
 optional = false
 python-versions = ">=3.5"
+groups = ["main", "docs"]
 files = [
     {file = "idna-3.7-py3-none-any.whl", hash = "sha256:82fee1fc78add43492d3a1898bfa6d8a904cc97d8427f683ed8e798d07761aa0"},
     {file = "idna-3.7.tar.gz", hash = "sha256:028ff3aadf0609c1fd278d8ea3089299412a7a8b9bd005dd08b9f8285bcb5cfc"},
@@ -373,6 +370,7 @@ version = "6.11.0"
 description = "Read metadata from Python packages"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "importlib_metadata-6.11.0-py3-none-any.whl", hash = "sha256:f0afba6205ad8f8947c7d338b5342d5db2afbfd82f9cbef7879a9539cc12eb9b"},
     {file = "importlib_metadata-6.11.0.tar.gz", hash = "sha256:1231cf92d825c9e03cfc4da076a16de6422c863558229ea0b22b675657463443"},
@@ -384,7 +382,7 @@ zipp = ">=0.5"
 [package.extras]
 docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
 perf = ["ipython"]
-testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)", "pytest-ruff"]
+testing = ["flufl.flake8", "importlib-resources (>=1.3) ; python_version < \"3.9\"", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7) ; platform_python_implementation != \"PyPy\"", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1) ; platform_python_implementation != \"PyPy\"", "pytest-perf (>=0.9.2)", "pytest-ruff"]
 
 [[package]]
 name = "iniconfig"
@@ -392,6 +390,7 @@ version = "2.0.0"
 description = "brain-dead simple config-ini parsing"
 optional = false
 python-versions = ">=3.7"
+groups = ["test"]
 files = [
     {file = "iniconfig-2.0.0-py3-none-any.whl", hash = "sha256:b6a85871a79d2e3b22d2d1b94ac2824226a63c6b741c88f7ae975f18b6778374"},
     {file = "iniconfig-2.0.0.tar.gz", hash = "sha256:2d91e135bf72d31a410b17c16da610a82cb55f6b0477d1a902134b24a455b8b3"},
@@ -403,6 +402,7 @@ version = "3.1.4"
 description = "A very fast and expressive template engine."
 optional = false
 python-versions = ">=3.7"
+groups = ["docs"]
 files = [
     {file = "jinja2-3.1.4-py3-none-any.whl", hash = "sha256:bc5dd2abb727a5319567b7a813e6a2e7318c39f4f487cfe6c89c6f9c7d25197d"},
     {file = "jinja2-3.1.4.tar.gz", hash = "sha256:4a3aee7acbbe7303aede8e9648d13b8bf88a429282aa6122a993f0ac800cb369"},
@@ -414,34 +414,18 @@ MarkupSafe = ">=2.0"
 [package.extras]
 i18n = ["Babel (>=2.7)"]
 
-[[package]]
-name = "loky"
-version = "3.0.0"
-description = "A robust implementation of concurrent.futures.ProcessPoolExecutor"
-optional = false
-python-versions = "*"
-files = [
-    {file = "loky-3.0.0-py2.py3-none-any.whl", hash = "sha256:1d5a4d778c7ff09c919aa3fbf2d879a2c7ac936a545c615af40e080a1c902b82"},
-    {file = "loky-3.0.0.tar.gz", hash = "sha256:fd8750b24b283a579bafaf0631d114aa4487c682aef6fce01fa3635336297fdf"},
-]
-
-[package.dependencies]
-cloudpickle = "*"
-
 [[package]]
 name = "markdown"
 version = "3.6"
 description = "Python implementation of John Gruber's Markdown."
 optional = false
 python-versions = ">=3.8"
+groups = ["docs"]
 files = [
     {file = "Markdown-3.6-py3-none-any.whl", hash = "sha256:48f276f4d8cfb8ce6527c8f79e2ee29708508bf4d40aa410fbc3b4ee832c850f"},
     {file = "Markdown-3.6.tar.gz", hash = "sha256:ed4f41f6daecbeeb96e576ce414c41d2d876daa9a16cb35fa8ed8c2ddfad0224"},
 ]
 
-[package.dependencies]
-importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}
-
 [package.extras]
 docs = ["mdx-gh-links (>=0.2)", "mkdocs (>=1.5)", "mkdocs-gen-files", "mkdocs-literate-nav", "mkdocs-nature (>=0.6)", "mkdocs-section-index", "mkdocstrings[python]"]
 testing = ["coverage", "pyyaml"]
@@ -452,6 +436,7 @@ version = "3.0.0"
 description = "Python port of markdown-it. Markdown parsing, done right!"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "markdown-it-py-3.0.0.tar.gz", hash = "sha256:e3f60a94fa066dc52ec76661e37c851cb232d92f9886b15cb560aaada2df8feb"},
     {file = "markdown_it_py-3.0.0-py3-none-any.whl", hash = "sha256:355216845c60bd96232cd8d8c40e8f9765cc86f46880e43a8fd22dc1a1a8cab1"},
@@ -476,6 +461,7 @@ version = "2.1.5"
 description = "Safely add untrusted strings to HTML/XML markup."
 optional = false
 python-versions = ">=3.7"
+groups = ["docs"]
 files = [
     {file = "MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:a17a92de5231666cfbe003f0e4b9b3a7ae3afb1ec2845aadc2bacc93ff85febc"},
     {file = "MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:72b6be590cc35924b02c78ef34b467da4ba07e4e0f0454a2c5907f473fc50ce5"},
@@ -545,6 +531,7 @@ version = "0.1.2"
 description = "Markdown URL utilities"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "mdurl-0.1.2-py3-none-any.whl", hash = "sha256:84008a41e51615a49fc9966191ff91509e3c40b939176e643fd50a5c2196b8f8"},
     {file = "mdurl-0.1.2.tar.gz", hash = "sha256:bb413d29f5eea38f31dd4754dd7377d4465116fb207585f97bf925588687c1ba"},
@@ -556,6 +543,7 @@ version = "1.3.4"
 description = "A deep merge function for 🐍."
 optional = false
 python-versions = ">=3.6"
+groups = ["docs"]
 files = [
     {file = "mergedeep-1.3.4-py3-none-any.whl", hash = "sha256:70775750742b25c0d8f36c55aed03d24c3384d17c951b3175d898bd778ef0307"},
     {file = "mergedeep-1.3.4.tar.gz", hash = "sha256:0096d52e9dad9939c3d975a774666af186eda617e6ca84df4c94dec30004f2a8"},
@@ -567,6 +555,7 @@ version = "1.6.0"
 description = "Project documentation with Markdown."
 optional = false
 python-versions = ">=3.8"
+groups = ["docs"]
 files = [
     {file = "mkdocs-1.6.0-py3-none-any.whl", hash = "sha256:1eb5cb7676b7d89323e62b56235010216319217d4af5ddc543a91beb8d125ea7"},
     {file = "mkdocs-1.6.0.tar.gz", hash = "sha256:a73f735824ef83a4f3bcb7a231dcab23f5a838f88b7efc54a0eef5fbdbc3c512"},
@@ -576,7 +565,6 @@ files = [
 click = ">=7.0"
 colorama = {version = ">=0.4", markers = "platform_system == \"Windows\""}
 ghp-import = ">=1.0"
-importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}
 jinja2 = ">=2.11.1"
 markdown = ">=3.3.6"
 markupsafe = ">=2.0.1"
@@ -590,7 +578,7 @@ watchdog = ">=2.0"
 
 [package.extras]
 i18n = ["babel (>=2.9.0)"]
-min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4)", "ghp-import (==1.0)", "importlib-metadata (==4.4)", "jinja2 (==2.11.1)", "markdown (==3.3.6)", "markupsafe (==2.0.1)", "mergedeep (==1.3.4)", "mkdocs-get-deps (==0.2.0)", "packaging (==20.5)", "pathspec (==0.11.1)", "pyyaml (==5.1)", "pyyaml-env-tag (==0.1)", "watchdog (==2.0)"]
+min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4) ; platform_system == \"Windows\"", "ghp-import (==1.0)", "importlib-metadata (==4.4) ; python_version < \"3.10\"", "jinja2 (==2.11.1)", "markdown (==3.3.6)", "markupsafe (==2.0.1)", "mergedeep (==1.3.4)", "mkdocs-get-deps (==0.2.0)", "packaging (==20.5)", "pathspec (==0.11.1)", "pyyaml (==5.1)", "pyyaml-env-tag (==0.1)", "watchdog (==2.0)"]
 
 [[package]]
 name = "mkdocs-autorefs"
@@ -598,6 +586,7 @@ version = "1.0.1"
 description = "Automatically link across pages in MkDocs."
 optional = false
 python-versions = ">=3.8"
+groups = ["docs"]
 files = [
     {file = "mkdocs_autorefs-1.0.1-py3-none-any.whl", hash = "sha256:aacdfae1ab197780fb7a2dac92ad8a3d8f7ca8049a9cbe56a4218cd52e8da570"},
     {file = "mkdocs_autorefs-1.0.1.tar.gz", hash = "sha256:f684edf847eced40b570b57846b15f0bf57fb93ac2c510450775dcf16accb971"},
@@ -614,13 +603,13 @@ version = "0.2.0"
 description = "MkDocs extension that lists all dependencies according to a mkdocs.yml file"
 optional = false
 python-versions = ">=3.8"
+groups = ["docs"]
 files = [
     {file = "mkdocs_get_deps-0.2.0-py3-none-any.whl", hash = "sha256:2bf11d0b133e77a0dd036abeeb06dec8775e46efa526dc70667d8863eefc6134"},
     {file = "mkdocs_get_deps-0.2.0.tar.gz", hash = "sha256:162b3d129c7fad9b19abfdcb9c1458a651628e4b1dea628ac68790fb3061c60c"},
 ]
 
 [package.dependencies]
-importlib-metadata = {version = ">=4.3", markers = "python_version < \"3.10\""}
 mergedeep = ">=1.3.4"
 platformdirs = ">=2.2.0"
 pyyaml = ">=5.1"
@@ -631,6 +620,7 @@ version = "9.5.23"
 description = "Documentation that simply works"
 optional = false
 python-versions = ">=3.8"
+groups = ["docs"]
 files = [
     {file = "mkdocs_material-9.5.23-py3-none-any.whl", hash = "sha256:ffd08a5beaef3cd135aceb58ded8b98bbbbf2b70e5b656f6a14a63c917d9b001"},
     {file = "mkdocs_material-9.5.23.tar.gz", hash = "sha256:4627fc3f15de2cba2bde9debc2fd59b9888ef494beabfe67eb352e23d14bf288"},
@@ -660,6 +650,7 @@ version = "1.3.1"
 description = "Extension pack for Python Markdown and MkDocs Material."
 optional = false
 python-versions = ">=3.8"
+groups = ["docs"]
 files = [
     {file = "mkdocs_material_extensions-1.3.1-py3-none-any.whl", hash = "sha256:adff8b62700b25cb77b53358dad940f3ef973dd6db797907c49e3c2ef3ab4e31"},
     {file = "mkdocs_material_extensions-1.3.1.tar.gz", hash = "sha256:10c9511cea88f568257f960358a467d12b970e1f7b2c0e5fb2bb48cab1928443"},
@@ -671,6 +662,7 @@ version = "0.24.3"
 description = "Automatic documentation from sources, for MkDocs."
 optional = false
 python-versions = ">=3.8"
+groups = ["docs"]
 files = [
     {file = "mkdocstrings-0.24.3-py3-none-any.whl", hash = "sha256:5c9cf2a32958cd161d5428699b79c8b0988856b0d4a8c5baf8395fc1bf4087c3"},
     {file = "mkdocstrings-0.24.3.tar.gz", hash = "sha256:f327b234eb8d2551a306735436e157d0a22d45f79963c60a8b585d5f7a94c1d2"},
@@ -678,7 +670,6 @@ files = [
 
 [package.dependencies]
 click = ">=7.0"
-importlib-metadata = {version = ">=4.6", markers = "python_version < \"3.10\""}
 Jinja2 = ">=2.11.1"
 Markdown = ">=3.3"
 MarkupSafe = ">=1.1"
@@ -686,7 +677,6 @@ mkdocs = ">=1.4"
 mkdocs-autorefs = ">=0.3.1"
 platformdirs = ">=2.2.0"
 pymdown-extensions = ">=6.3"
-typing-extensions = {version = ">=4.1", markers = "python_version < \"3.10\""}
 
 [package.extras]
 crystal = ["mkdocstrings-crystal (>=0.3.4)"]
@@ -699,6 +689,7 @@ version = "1.10.0"
 description = "A Python handler for mkdocstrings."
 optional = false
 python-versions = ">=3.8"
+groups = ["docs"]
 files = [
     {file = "mkdocstrings_python-1.10.0-py3-none-any.whl", hash = "sha256:ba833fbd9d178a4b9d5cb2553a4df06e51dc1f51e41559a4d2398c16a6f69ecc"},
     {file = "mkdocstrings_python-1.10.0.tar.gz", hash = "sha256:71678fac657d4d2bb301eed4e4d2d91499c095fd1f8a90fa76422a87a5693828"},
@@ -714,6 +705,7 @@ version = "1.6.0"
 description = "Patch asyncio to allow nested event loops"
 optional = false
 python-versions = ">=3.5"
+groups = ["main"]
 files = [
     {file = "nest_asyncio-1.6.0-py3-none-any.whl", hash = "sha256:87af6efd6b5e897c81050477ef65c62e2b2f35d51703cae01aff2905b1852e1c"},
     {file = "nest_asyncio-1.6.0.tar.gz", hash = "sha256:6f172d5449aca15afd6c646851f4e31e02c598d553a667e38cafa997cfec55fe"},
@@ -721,97 +713,210 @@ files = [
 
 [[package]]
 name = "opentelemetry-api"
-version = "1.21.0"
+version = "1.38.0"
 description = "OpenTelemetry Python API"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.9"
+groups = ["main"]
 files = [
-    {file = "opentelemetry_api-1.21.0-py3-none-any.whl", hash = "sha256:4bb86b28627b7e41098f0e93280fe4892a1abed1b79a19aec6f928f39b17dffb"},
-    {file = "opentelemetry_api-1.21.0.tar.gz", hash = "sha256:d6185fd5043e000075d921822fd2d26b953eba8ca21b1e2fa360dd46a7686316"},
+    {file = "opentelemetry_api-1.38.0-py3-none-any.whl", hash = "sha256:2891b0197f47124454ab9f0cf58f3be33faca394457ac3e09daba13ff50aa582"},
+    {file = "opentelemetry_api-1.38.0.tar.gz", hash = "sha256:f4c193b5e8acb0912b06ac5b16321908dd0843d75049c091487322284a3eea12"},
 ]
 
 [package.dependencies]
-deprecated = ">=1.2.6"
-importlib-metadata = ">=6.0,<7.0"
+importlib-metadata = ">=6.0,<8.8.0"
+typing-extensions = ">=4.5.0"
 
 [[package]]
 name = "opentelemetry-exporter-otlp-proto-common"
-version = "1.21.0"
+version = "1.38.0"
 description = "OpenTelemetry Protobuf encoding"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.9"
+groups = ["main"]
 files = [
-    {file = "opentelemetry_exporter_otlp_proto_common-1.21.0-py3-none-any.whl", hash = "sha256:97b1022b38270ec65d11fbfa348e0cd49d12006485c2321ea3b1b7037d42b6ec"},
-    {file = "opentelemetry_exporter_otlp_proto_common-1.21.0.tar.gz", hash = "sha256:61db274d8a68d636fb2ec2a0f281922949361cdd8236e25ff5539edf942b3226"},
+    {file = "opentelemetry_exporter_otlp_proto_common-1.38.0-py3-none-any.whl", hash = "sha256:03cb76ab213300fe4f4c62b7d8f17d97fcfd21b89f0b5ce38ea156327ddda74a"},
+    {file = "opentelemetry_exporter_otlp_proto_common-1.38.0.tar.gz", hash = "sha256:e333278afab4695aa8114eeb7bf4e44e65c6607d54968271a249c180b2cb605c"},
 ]
 
 [package.dependencies]
-backoff = {version = ">=1.10.0,<3.0.0", markers = "python_version >= \"3.7\""}
-opentelemetry-proto = "1.21.0"
+opentelemetry-proto = "1.38.0"
 
 [[package]]
 name = "opentelemetry-exporter-otlp-proto-http"
-version = "1.21.0"
+version = "1.38.0"
 description = "OpenTelemetry Collector Protobuf over HTTP Exporter"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.9"
+groups = ["main"]
 files = [
-    {file = "opentelemetry_exporter_otlp_proto_http-1.21.0-py3-none-any.whl", hash = "sha256:56837773de6fb2714c01fc4895caebe876f6397bbc4d16afddf89e1299a55ee2"},
-    {file = "opentelemetry_exporter_otlp_proto_http-1.21.0.tar.gz", hash = "sha256:19d60afa4ae8597f7ef61ad75c8b6c6b7ef8cb73a33fb4aed4dbc86d5c8d3301"},
+    {file = "opentelemetry_exporter_otlp_proto_http-1.38.0-py3-none-any.whl", hash = "sha256:84b937305edfc563f08ec69b9cb2298be8188371217e867c1854d77198d0825b"},
+    {file = "opentelemetry_exporter_otlp_proto_http-1.38.0.tar.gz", hash = "sha256:f16bd44baf15cbe07633c5112ffc68229d0edbeac7b37610be0b2def4e21e90b"},
 ]
 
 [package.dependencies]
-backoff = {version = ">=1.10.0,<3.0.0", markers = "python_version >= \"3.7\""}
-deprecated = ">=1.2.6"
 googleapis-common-protos = ">=1.52,<2.0"
 opentelemetry-api = ">=1.15,<2.0"
-opentelemetry-exporter-otlp-proto-common = "1.21.0"
-opentelemetry-proto = "1.21.0"
-opentelemetry-sdk = ">=1.21.0,<1.22.0"
+opentelemetry-exporter-otlp-proto-common = "1.38.0"
+opentelemetry-proto = "1.38.0"
+opentelemetry-sdk = ">=1.38.0,<1.39.0"
 requests = ">=2.7,<3.0"
+typing-extensions = ">=4.5.0"
+
+[[package]]
+name = "opentelemetry-instrumentation"
+version = "0.59b0"
+description = "Instrumentation Tools & Auto Instrumentation for OpenTelemetry Python"
+optional = false
+python-versions = ">=3.9"
+groups = ["main"]
+files = [
+    {file = "opentelemetry_instrumentation-0.59b0-py3-none-any.whl", hash = "sha256:44082cc8fe56b0186e87ee8f7c17c327c4c2ce93bdbe86496e600985d74368ee"},
+    {file = "opentelemetry_instrumentation-0.59b0.tar.gz", hash = "sha256:6010f0faaacdaf7c4dff8aac84e226d23437b331dcda7e70367f6d73a7db1adc"},
+]
+
+[package.dependencies]
+opentelemetry-api = ">=1.4,<2.0"
+opentelemetry-semantic-conventions = "0.59b0"
+packaging = ">=18.0"
+wrapt = ">=1.0.0,<2.0.0"
+
+[[package]]
+name = "opentelemetry-instrumentation-httpx"
+version = "0.59b0"
+description = "OpenTelemetry HTTPX Instrumentation"
+optional = false
+python-versions = ">=3.9"
+groups = ["main"]
+files = [
+    {file = "opentelemetry_instrumentation_httpx-0.59b0-py3-none-any.whl", hash = "sha256:7dc9f66aef4ca3904d877f459a70c78eafd06131dc64d713b9b1b5a7d0a48f05"},
+    {file = "opentelemetry_instrumentation_httpx-0.59b0.tar.gz", hash = "sha256:a1cb9b89d9f05a82701cc9ab9cfa3db54fd76932489449778b350bc1b9f0e872"},
+]
+
+[package.dependencies]
+opentelemetry-api = ">=1.12,<2.0"
+opentelemetry-instrumentation = "0.59b0"
+opentelemetry-semantic-conventions = "0.59b0"
+opentelemetry-util-http = "0.59b0"
+wrapt = ">=1.0.0,<2.0.0"
 
 [package.extras]
-test = ["responses (==0.22.0)"]
+instruments = ["httpx (>=0.18.0)"]
+
+[[package]]
+name = "opentelemetry-instrumentation-requests"
+version = "0.59b0"
+description = "OpenTelemetry requests instrumentation"
+optional = false
+python-versions = ">=3.9"
+groups = ["main"]
+files = [
+    {file = "opentelemetry_instrumentation_requests-0.59b0-py3-none-any.whl", hash = "sha256:d43121532877e31a46c48649279cec2504ee1e0ceb3c87b80fe5ccd7eafc14c1"},
+    {file = "opentelemetry_instrumentation_requests-0.59b0.tar.gz", hash = "sha256:9af2ffe3317f03074d7f865919139e89170b6763a0251b68c25e8e64e04b3400"},
+]
+
+[package.dependencies]
+opentelemetry-api = ">=1.12,<2.0"
+opentelemetry-instrumentation = "0.59b0"
+opentelemetry-semantic-conventions = "0.59b0"
+opentelemetry-util-http = "0.59b0"
+
+[package.extras]
+instruments = ["requests (>=2.0,<3.0)"]
+
+[[package]]
+name = "opentelemetry-instrumentation-threading"
+version = "0.59b0"
+description = "Thread context propagation support for OpenTelemetry"
+optional = false
+python-versions = ">=3.9"
+groups = ["main"]
+files = [
+    {file = "opentelemetry_instrumentation_threading-0.59b0-py3-none-any.whl", hash = "sha256:76da2fc01fe1dccebff6581080cff9e42ac7b27cc61eb563f3c4435c727e8eca"},
+    {file = "opentelemetry_instrumentation_threading-0.59b0.tar.gz", hash = "sha256:ce5658730b697dcbc0e0d6d13643a69fd8aeb1b32fa8db3bade8ce114c7975f3"},
+]
+
+[package.dependencies]
+opentelemetry-api = ">=1.12,<2.0"
+opentelemetry-instrumentation = "0.59b0"
+wrapt = ">=1.0.0,<2.0.0"
+
+[[package]]
+name = "opentelemetry-instrumentation-urllib"
+version = "0.59b0"
+description = "OpenTelemetry urllib instrumentation"
+optional = false
+python-versions = ">=3.9"
+groups = ["main"]
+files = [
+    {file = "opentelemetry_instrumentation_urllib-0.59b0-py3-none-any.whl", hash = "sha256:ed2bd1a02e4334c13c13033681ff8cf10d5dfcd5b0e6d7514f94a00e7f7bd671"},
+    {file = "opentelemetry_instrumentation_urllib-0.59b0.tar.gz", hash = "sha256:1e2bb3427ce13854453777d8dccf3b0144640b03846f00fc302bdb6e1f2f8c7a"},
+]
+
+[package.dependencies]
+opentelemetry-api = ">=1.12,<2.0"
+opentelemetry-instrumentation = "0.59b0"
+opentelemetry-semantic-conventions = "0.59b0"
+opentelemetry-util-http = "0.59b0"
 
 [[package]]
 name = "opentelemetry-proto"
-version = "1.21.0"
+version = "1.38.0"
 description = "OpenTelemetry Python Proto"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.9"
+groups = ["main"]
 files = [
-    {file = "opentelemetry_proto-1.21.0-py3-none-any.whl", hash = "sha256:32fc4248e83eebd80994e13963e683f25f3b443226336bb12b5b6d53638f50ba"},
-    {file = "opentelemetry_proto-1.21.0.tar.gz", hash = "sha256:7d5172c29ed1b525b5ecf4ebe758c7138a9224441b3cfe683d0a237c33b1941f"},
+    {file = "opentelemetry_proto-1.38.0-py3-none-any.whl", hash = "sha256:b6ebe54d3217c42e45462e2a1ae28c3e2bf2ec5a5645236a490f55f45f1a0a18"},
+    {file = "opentelemetry_proto-1.38.0.tar.gz", hash = "sha256:88b161e89d9d372ce723da289b7da74c3a8354a8e5359992be813942969ed468"},
 ]
 
 [package.dependencies]
-protobuf = ">=3.19,<5.0"
+protobuf = ">=5.0,<7.0"
 
 [[package]]
 name = "opentelemetry-sdk"
-version = "1.21.0"
+version = "1.38.0"
 description = "OpenTelemetry Python SDK"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.9"
+groups = ["main"]
 files = [
-    {file = "opentelemetry_sdk-1.21.0-py3-none-any.whl", hash = "sha256:9fe633243a8c655fedace3a0b89ccdfc654c0290ea2d8e839bd5db3131186f73"},
-    {file = "opentelemetry_sdk-1.21.0.tar.gz", hash = "sha256:3ec8cd3020328d6bc5c9991ccaf9ae820ccb6395a5648d9a95d3ec88275b8879"},
+    {file = "opentelemetry_sdk-1.38.0-py3-none-any.whl", hash = "sha256:1c66af6564ecc1553d72d811a01df063ff097cdc82ce188da9951f93b8d10f6b"},
+    {file = "opentelemetry_sdk-1.38.0.tar.gz", hash = "sha256:93df5d4d871ed09cb4272305be4d996236eedb232253e3ab864c8620f051cebe"},
 ]
 
 [package.dependencies]
-opentelemetry-api = "1.21.0"
-opentelemetry-semantic-conventions = "0.42b0"
-typing-extensions = ">=3.7.4"
+opentelemetry-api = "1.38.0"
+opentelemetry-semantic-conventions = "0.59b0"
+typing-extensions = ">=4.5.0"
 
 [[package]]
 name = "opentelemetry-semantic-conventions"
-version = "0.42b0"
+version = "0.59b0"
 description = "OpenTelemetry Semantic Conventions"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.9"
+groups = ["main"]
 files = [
-    {file = "opentelemetry_semantic_conventions-0.42b0-py3-none-any.whl", hash = "sha256:5cd719cbfec448af658860796c5d0fcea2fdf0945a2bed2363f42cb1ee39f526"},
-    {file = "opentelemetry_semantic_conventions-0.42b0.tar.gz", hash = "sha256:44ae67a0a3252a05072877857e5cc1242c98d4cf12870159f1a94bec800d38ec"},
+    {file = "opentelemetry_semantic_conventions-0.59b0-py3-none-any.whl", hash = "sha256:35d3b8833ef97d614136e253c1da9342b4c3c083bbaf29ce31d572a1c3825eed"},
+    {file = "opentelemetry_semantic_conventions-0.59b0.tar.gz", hash = "sha256:7a6db3f30d70202d5bf9fa4b69bc866ca6a30437287de6c510fb594878aed6b0"},
+]
+
+[package.dependencies]
+opentelemetry-api = "1.38.0"
+typing-extensions = ">=4.5.0"
+
+[[package]]
+name = "opentelemetry-util-http"
+version = "0.59b0"
+description = "Web util for OpenTelemetry"
+optional = false
+python-versions = ">=3.9"
+groups = ["main"]
+files = [
+    {file = "opentelemetry_util_http-0.59b0-py3-none-any.whl", hash = "sha256:6d036a07563bce87bf521839c0671b507a02a0d39d7ea61b88efa14c6e25355d"},
+    {file = "opentelemetry_util_http-0.59b0.tar.gz", hash = "sha256:ae66ee91be31938d832f3b4bc4eb8a911f6eddd38969c4a871b1230db2a0a560"},
 ]
 
 [[package]]
@@ -820,6 +925,7 @@ version = "24.0"
 description = "Core utilities for Python packages"
 optional = false
 python-versions = ">=3.7"
+groups = ["main", "docs", "test"]
 files = [
     {file = "packaging-24.0-py3-none-any.whl", hash = "sha256:2ddfb553fdf02fb784c234c7ba6ccc288296ceabec964ad2eae3777778130bc5"},
     {file = "packaging-24.0.tar.gz", hash = "sha256:eb82c5e3e56209074766e6885bb04b8c38a0c015d0a30036ebe7ece34c9989e9"},
@@ -831,6 +937,7 @@ version = "0.5.6"
 description = "Divides large result sets into pages for easier browsing"
 optional = false
 python-versions = "*"
+groups = ["docs"]
 files = [
     {file = "paginate-0.5.6.tar.gz", hash = "sha256:5e6007b6a9398177a7e1648d04fdd9f8c9766a1a945bceac82f1929e8c78af2d"},
 ]
@@ -841,6 +948,7 @@ version = "0.12.1"
 description = "Utility library for gitignore style pattern matching of file paths."
 optional = false
 python-versions = ">=3.8"
+groups = ["docs"]
 files = [
     {file = "pathspec-0.12.1-py3-none-any.whl", hash = "sha256:a0d503e138a4c123b27490a4f7beda6a01c6f288df0e4a8b79c7eb0dc7b4cc08"},
     {file = "pathspec-0.12.1.tar.gz", hash = "sha256:a482d51503a1ab33b1c67a6c3813a26953dbdc71c31dacaef9a838c4e29f5712"},
@@ -852,6 +960,7 @@ version = "4.2.2"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
 optional = false
 python-versions = ">=3.8"
+groups = ["docs"]
 files = [
     {file = "platformdirs-4.2.2-py3-none-any.whl", hash = "sha256:2d7a1657e36a80ea911db832a8a6ece5ee53d8de21edd5cc5879af6530b1bfee"},
     {file = "platformdirs-4.2.2.tar.gz", hash = "sha256:38b7b51f512eed9e84a22788b4bce1de17c0adb134d6becb09836e37d8654cd3"},
@@ -868,6 +977,7 @@ version = "1.5.0"
 description = "plugin and hook calling mechanisms for python"
 optional = false
 python-versions = ">=3.8"
+groups = ["test"]
 files = [
     {file = "pluggy-1.5.0-py3-none-any.whl", hash = "sha256:44e1ad92c8ca002de6377e165f3e0f1be63266ab4d554740532335b9d75ea669"},
     {file = "pluggy-1.5.0.tar.gz", hash = "sha256:2cffa88e94fdc978c4c574f15f9e59b7f4201d439195c3715ca9e2486f1d0cf1"},
@@ -879,22 +989,22 @@ testing = ["pytest", "pytest-benchmark"]
 
 [[package]]
 name = "protobuf"
-version = "4.25.3"
+version = "6.33.1"
 description = ""
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
+groups = ["main"]
 files = [
-    {file = "protobuf-4.25.3-cp310-abi3-win32.whl", hash = "sha256:d4198877797a83cbfe9bffa3803602bbe1625dc30d8a097365dbc762e5790faa"},
-    {file = "protobuf-4.25.3-cp310-abi3-win_amd64.whl", hash = "sha256:209ba4cc916bab46f64e56b85b090607a676f66b473e6b762e6f1d9d591eb2e8"},
-    {file = "protobuf-4.25.3-cp37-abi3-macosx_10_9_universal2.whl", hash = "sha256:f1279ab38ecbfae7e456a108c5c0681e4956d5b1090027c1de0f934dfdb4b35c"},
-    {file = "protobuf-4.25.3-cp37-abi3-manylinux2014_aarch64.whl", hash = "sha256:e7cb0ae90dd83727f0c0718634ed56837bfeeee29a5f82a7514c03ee1364c019"},
-    {file = "protobuf-4.25.3-cp37-abi3-manylinux2014_x86_64.whl", hash = "sha256:7c8daa26095f82482307bc717364e7c13f4f1c99659be82890dcfc215194554d"},
-    {file = "protobuf-4.25.3-cp38-cp38-win32.whl", hash = "sha256:f4f118245c4a087776e0a8408be33cf09f6c547442c00395fbfb116fac2f8ac2"},
-    {file = "protobuf-4.25.3-cp38-cp38-win_amd64.whl", hash = "sha256:c053062984e61144385022e53678fbded7aea14ebb3e0305ae3592fb219ccfa4"},
-    {file = "protobuf-4.25.3-cp39-cp39-win32.whl", hash = "sha256:19b270aeaa0099f16d3ca02628546b8baefe2955bbe23224aaf856134eccf1e4"},
-    {file = "protobuf-4.25.3-cp39-cp39-win_amd64.whl", hash = "sha256:e3c97a1555fd6388f857770ff8b9703083de6bf1f9274a002a332d65fbb56c8c"},
-    {file = "protobuf-4.25.3-py3-none-any.whl", hash = "sha256:f0700d54bcf45424477e46a9f0944155b46fb0639d69728739c0e47bab83f2b9"},
-    {file = "protobuf-4.25.3.tar.gz", hash = "sha256:25b5d0b42fd000320bd7830b349e3b696435f3b329810427a6bcce6a5492cc5c"},
+    {file = "protobuf-6.33.1-cp310-abi3-win32.whl", hash = "sha256:f8d3fdbc966aaab1d05046d0240dd94d40f2a8c62856d41eaa141ff64a79de6b"},
+    {file = "protobuf-6.33.1-cp310-abi3-win_amd64.whl", hash = "sha256:923aa6d27a92bf44394f6abf7ea0500f38769d4b07f4be41cb52bd8b1123b9ed"},
+    {file = "protobuf-6.33.1-cp39-abi3-macosx_10_9_universal2.whl", hash = "sha256:fe34575f2bdde76ac429ec7b570235bf0c788883e70aee90068e9981806f2490"},
+    {file = "protobuf-6.33.1-cp39-abi3-manylinux2014_aarch64.whl", hash = "sha256:f8adba2e44cde2d7618996b3fc02341f03f5bc3f2748be72dc7b063319276178"},
+    {file = "protobuf-6.33.1-cp39-abi3-manylinux2014_s390x.whl", hash = "sha256:0f4cf01222c0d959c2b399142deb526de420be8236f22c71356e2a544e153c53"},
+    {file = "protobuf-6.33.1-cp39-abi3-manylinux2014_x86_64.whl", hash = "sha256:8fd7d5e0eb08cd5b87fd3df49bc193f5cfd778701f47e11d127d0afc6c39f1d1"},
+    {file = "protobuf-6.33.1-cp39-cp39-win32.whl", hash = "sha256:023af8449482fa884d88b4563d85e83accab54138ae098924a985bcbb734a213"},
+    {file = "protobuf-6.33.1-cp39-cp39-win_amd64.whl", hash = "sha256:df051de4fd7e5e4371334e234c62ba43763f15ab605579e04c7008c05735cd82"},
+    {file = "protobuf-6.33.1-py3-none-any.whl", hash = "sha256:d595a9fd694fdeb061a62fbe10eb039cc1e444df81ec9bb70c7fc59ebcb1eafa"},
+    {file = "protobuf-6.33.1.tar.gz", hash = "sha256:97f65757e8d09870de6fd973aeddb92f85435607235d20b2dfed93405d00c85b"},
 ]
 
 [[package]]
@@ -903,6 +1013,7 @@ version = "5.9.8"
 description = "Cross-platform lib for process and system monitoring in Python."
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
+groups = ["main"]
 files = [
     {file = "psutil-5.9.8-cp27-cp27m-macosx_10_9_x86_64.whl", hash = "sha256:26bd09967ae00920df88e0352a91cff1a78f8d69b3ecabbfe733610c0af486c8"},
     {file = "psutil-5.9.8-cp27-cp27m-manylinux2010_i686.whl", hash = "sha256:05806de88103b25903dff19bb6692bd2e714ccf9e668d050d144012055cbca73"},
@@ -923,7 +1034,7 @@ files = [
 ]
 
 [package.extras]
-test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"]
+test = ["enum34 ; python_version <= \"3.4\"", "ipaddress ; python_version < \"3.0\"", "mock ; python_version < \"3.0\"", "pywin32 ; sys_platform == \"win32\"", "wmi ; sys_platform == \"win32\""]
 
 [[package]]
 name = "pygments"
@@ -931,6 +1042,7 @@ version = "2.18.0"
 description = "Pygments is a syntax highlighting package written in Python."
 optional = false
 python-versions = ">=3.8"
+groups = ["main", "docs"]
 files = [
     {file = "pygments-2.18.0-py3-none-any.whl", hash = "sha256:b8e6aca0523f3ab76fee51799c488e38782ac06eafcf95e7ba832985c8e7b13a"},
     {file = "pygments-2.18.0.tar.gz", hash = "sha256:786ff802f32e91311bff3889f6e9a86e81505fe99f2735bb6d60ae0c5004f199"},
@@ -945,6 +1057,7 @@ version = "10.8.1"
 description = "Extension pack for Python Markdown."
 optional = false
 python-versions = ">=3.8"
+groups = ["docs"]
 files = [
     {file = "pymdown_extensions-10.8.1-py3-none-any.whl", hash = "sha256:f938326115884f48c6059c67377c46cf631c733ef3629b6eed1349989d1b30cb"},
     {file = "pymdown_extensions-10.8.1.tar.gz", hash = "sha256:3ab1db5c9e21728dabf75192d71471f8e50f216627e9a1fa9535ecb0231b9940"},
@@ -963,6 +1076,7 @@ version = "7.4.4"
 description = "pytest: simple powerful testing with Python"
 optional = false
 python-versions = ">=3.7"
+groups = ["test"]
 files = [
     {file = "pytest-7.4.4-py3-none-any.whl", hash = "sha256:b090cdf5ed60bf4c45261be03239c2c1c22df034fbffe691abe93cd80cea01d8"},
     {file = "pytest-7.4.4.tar.gz", hash = "sha256:2cf0005922c6ace4a3e2ec8b4080eb0d9753fdc93107415332f50ce9e7994280"},
@@ -985,6 +1099,7 @@ version = "2.9.0.post0"
 description = "Extensions to the standard Python datetime module"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
+groups = ["docs"]
 files = [
     {file = "python-dateutil-2.9.0.post0.tar.gz", hash = "sha256:37dd54208da7e1cd875388217d5e00ebd4179249f90fb72437e91a35459a0ad3"},
     {file = "python_dateutil-2.9.0.post0-py2.py3-none-any.whl", hash = "sha256:a8b2bc7bffae282281c8140a97d3aa9c14da0b136dfe83f850eea9a5f7470427"},
@@ -999,6 +1114,7 @@ version = "6.0.1"
 description = "YAML parser and emitter for Python"
 optional = false
 python-versions = ">=3.6"
+groups = ["docs"]
 files = [
     {file = "PyYAML-6.0.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:d858aa552c999bc8a8d57426ed01e40bef403cd8ccdd0fc5f6f04a00414cac2a"},
     {file = "PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:fd66fc5d0da6d9815ba2cebeb4205f95818ff4b79c3ebe268e75d961704af52f"},
@@ -1018,6 +1134,7 @@ files = [
     {file = "PyYAML-6.0.1-cp311-cp311-win_amd64.whl", hash = "sha256:bf07ee2fef7014951eeb99f56f39c9bb4af143d8aa3c21b1677805985307da34"},
     {file = "PyYAML-6.0.1-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:855fb52b0dc35af121542a76b9a84f8d1cd886ea97c84703eaa6d88e37a2ad28"},
     {file = "PyYAML-6.0.1-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:40df9b996c2b73138957fe23a16a4f0ba614f4c0efce1e9406a184b6d07fa3a9"},
+    {file = "PyYAML-6.0.1-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:a08c6f0fe150303c1c6b71ebcd7213c2858041a7e01975da3a99aed1e7a378ef"},
     {file = "PyYAML-6.0.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:6c22bec3fbe2524cde73d7ada88f6566758a8f7227bfbf93a408a9d86bcc12a0"},
     {file = "PyYAML-6.0.1-cp312-cp312-musllinux_1_1_x86_64.whl", hash = "sha256:8d4e9c88387b0f5c7d5f281e55304de64cf7f9c0021a3525bd3b1c542da3b0e4"},
     {file = "PyYAML-6.0.1-cp312-cp312-win32.whl", hash = "sha256:d483d2cdf104e7c9fa60c544d92981f12ad66a457afae824d146093b8c294c54"},
@@ -1058,6 +1175,7 @@ version = "0.1"
 description = "A custom YAML tag for referencing environment variables in YAML files. "
 optional = false
 python-versions = ">=3.6"
+groups = ["docs"]
 files = [
     {file = "pyyaml_env_tag-0.1-py3-none-any.whl", hash = "sha256:af31106dec8a4d68c60207c1886031cbf839b68aa7abccdb19868200532c2069"},
     {file = "pyyaml_env_tag-0.1.tar.gz", hash = "sha256:70092675bda14fdec33b31ba77e7543de9ddc88f2e5b99160396572d11525bdb"},
@@ -1072,6 +1190,7 @@ version = "2024.5.15"
 description = "Alternative regular expression module, to replace re."
 optional = false
 python-versions = ">=3.8"
+groups = ["docs"]
 files = [
     {file = "regex-2024.5.15-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:a81e3cfbae20378d75185171587cbf756015ccb14840702944f014e0d93ea09f"},
     {file = "regex-2024.5.15-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:7b59138b219ffa8979013be7bc85bb60c6f7b7575df3d56dc1e403a438c7a3f6"},
@@ -1160,6 +1279,7 @@ version = "2.31.0"
 description = "Python HTTP for Humans."
 optional = false
 python-versions = ">=3.7"
+groups = ["main", "docs"]
 files = [
     {file = "requests-2.31.0-py3-none-any.whl", hash = "sha256:58cd2187c01e70e6e26505bca751777aa9f2ee0b7f4300988b709f44e013003f"},
     {file = "requests-2.31.0.tar.gz", hash = "sha256:942c5a758f98d790eaed1a29cb6eefc7ffb0d1cf7af05c3d2791656dbd6ad1e1"},
@@ -1181,6 +1301,7 @@ version = "13.7.1"
 description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
 optional = false
 python-versions = ">=3.7.0"
+groups = ["main"]
 files = [
     {file = "rich-13.7.1-py3-none-any.whl", hash = "sha256:4edbae314f59eb482f54e9e30bf00d33350aaa94f4bfcd4e9e3110e64d0d7222"},
     {file = "rich-13.7.1.tar.gz", hash = "sha256:9be308cb1fe2f1f57d67ce99e95af38a1e2bc71ad9813b0e247cf7ffbcc3a432"},
@@ -1199,6 +1320,7 @@ version = "1.5.4"
 description = "Tool to Detect Surrounding Shell"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "shellingham-1.5.4-py2.py3-none-any.whl", hash = "sha256:7ecfff8f2fd72616f7481040475a65b2bf8af90a56c89140852d1120324e8686"},
     {file = "shellingham-1.5.4.tar.gz", hash = "sha256:8dbca0739d487e5bd35ab3ca4b36e11c4078f3a234bfce294b0a0291363404de"},
@@ -1210,6 +1332,7 @@ version = "1.16.0"
 description = "Python 2 and 3 compatibility utilities"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
+groups = ["docs"]
 files = [
     {file = "six-1.16.0-py2.py3-none-any.whl", hash = "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"},
     {file = "six-1.16.0.tar.gz", hash = "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926"},
@@ -1221,6 +1344,7 @@ version = "1.3.1"
 description = "Sniff out which async library your code is running under"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "sniffio-1.3.1-py3-none-any.whl", hash = "sha256:2f6da418d1f1e0fddd844478f41680e794e6051915791a034ff65e5f100525a2"},
     {file = "sniffio-1.3.1.tar.gz", hash = "sha256:f4324edc670a0f49750a81b895f35c3adb843cca46f0530f79fc1babb23789dc"},
@@ -1228,25 +1352,30 @@ files = [
 
 [[package]]
 name = "synapseclient"
-version = "4.2.0"
+version = "4.10.0"
 description = "A client for Synapse, a collaborative, open-source research platform that allows teams to share data, track analyses, and collaborate."
 optional = false
-python-versions = ">=3.8"
+python-versions = "<3.14,>=3.9"
+groups = ["main"]
 files = [
-    {file = "synapseclient-4.2.0-py3-none-any.whl", hash = "sha256:ab5bc9c2bf5b90f271f1a9478eff7e9fca3e573578401ac706383ddb984d7a13"},
-    {file = "synapseclient-4.2.0.tar.gz", hash = "sha256:89222661125de1795b1a096cf8c58b8115c19d6b0fa5846ed2a41cdb394ef773"},
+    {file = "synapseclient-4.10.0-py3-none-any.whl", hash = "sha256:ce1e588258132d923dcbb84cc35491b5952e182e4c40bd90f97b8734c2603c25"},
+    {file = "synapseclient-4.10.0.tar.gz", hash = "sha256:667db3cad5afd541604b0a4b53fdad6a6cab15ccc00956c365356b59777aba00"},
 ]
 
 [package.dependencies]
 async-lru = ">=2.0.4,<2.1.0"
 asyncio-atexit = ">=1.0.1,<1.1.0"
 deprecated = ">=1.2.4,<2.0"
-httpx = ">=0.27.0,<0.28.0"
-loky = ">=3.0.0,<3.1.0"
+httpcore = ">=1.0.9"
+httpx = ">=0.27.0"
 nest-asyncio = ">=1.6.0,<1.7.0"
-opentelemetry-api = ">=1.21.0,<1.22.0"
-opentelemetry-exporter-otlp-proto-http = ">=1.21.0,<1.22.0"
-opentelemetry-sdk = ">=1.21.0,<1.22.0"
+opentelemetry-api = ">=1.21.0"
+opentelemetry-exporter-otlp-proto-http = ">=1.21.0"
+opentelemetry-instrumentation-httpx = ">=0.48b0"
+opentelemetry-instrumentation-requests = ">=0.48b0"
+opentelemetry-instrumentation-threading = ">=0.48b0"
+opentelemetry-instrumentation-urllib = ">=0.48b0"
+opentelemetry-sdk = ">=1.21.0"
 psutil = ">=5.9.8,<5.10.0"
 requests = ">=2.22.0,<3.0"
 tqdm = ">=4.66.2,<5.0"
@@ -1254,11 +1383,11 @@ urllib3 = ">=1.26.18,<2"
 
 [package.extras]
 boto3 = ["boto3 (>=1.7.0,<2.0)"]
-dev = ["black", "flake8 (>=3.7.0,<4.0)", "func-timeout (>=4.3,<5.0)", "pre-commit", "pytest (>=6.0.0,<7.0)", "pytest-asyncio (>=0.19,<1.0)", "pytest-cov (>=4.1.0,<4.2.0)", "pytest-mock (>=3.0,<4.0)", "pytest-rerunfailures (>=12.0,<13.0)", "pytest-socket (>=0.6.0,<0.7.0)", "pytest-xdist[psutil] (>=2.2,<3.0.0)"]
-docs = ["markdown-include (>=0.8.1,<0.9.0)", "mkdocs (>=1.5.3)", "mkdocs-material (>=9.4.14)", "mkdocs-open-in-new-tab (>=1.0.3,<1.1.0)", "mkdocstrings (>=0.24.0)", "mkdocstrings-python (>=1.7.5)", "termynal (>=0.11.1)"]
+dev = ["black", "flake8 (>=3.7.0,<4.0)", "func-timeout (>=4.3,<5.0)", "pandas (>=1.5,<3.0)", "pre-commit", "pytest (>=8.2.0,<8.3.0)", "pytest-asyncio (>=1.2.0,<2.0)", "pytest-cov (>=4.1.0,<4.2.0)", "pytest-mock (>=3.0,<4.0)", "pytest-rerunfailures (>=12.0,<13.0)", "pytest-socket (>=0.6.0,<0.7.0)", "pytest-xdist[psutil] (>=2.2,<3.0.0)"]
+docs = ["markdown-include (>=0.8.1,<0.9.0)", "mkdocs (>=1.5.3)", "mkdocs-material (>=9.4.14)", "mkdocs-open-in-new-tab (>=1.0.3,<1.1.0)", "mkdocstrings (>=0.24.0)", "mkdocstrings-python (>=1.8.0)", "termynal (>=0.11.1)"]
 pandas = ["pandas (>=1.5,<3.0)"]
-pysftp = ["pysftp (>=0.2.8,<0.3)"]
-tests = ["flake8 (>=3.7.0,<4.0)", "func-timeout (>=4.3,<5.0)", "pytest (>=6.0.0,<7.0)", "pytest-asyncio (>=0.19,<1.0)", "pytest-cov (>=4.1.0,<4.2.0)", "pytest-mock (>=3.0,<4.0)", "pytest-rerunfailures (>=12.0,<13.0)", "pytest-socket (>=0.6.0,<0.7.0)", "pytest-xdist[psutil] (>=2.2,<3.0.0)"]
+pysftp = ["paramiko (<4.0.0)", "pysftp (>=0.2.8,<0.3)"]
+tests = ["flake8 (>=3.7.0,<4.0)", "func-timeout (>=4.3,<5.0)", "pandas (>=1.5,<3.0)", "pytest (>=8.2.0,<8.3.0)", "pytest-asyncio (>=1.2.0,<2.0)", "pytest-cov (>=4.1.0,<4.2.0)", "pytest-mock (>=3.0,<4.0)", "pytest-rerunfailures (>=12.0,<13.0)", "pytest-socket (>=0.6.0,<0.7.0)", "pytest-xdist[psutil] (>=2.2,<3.0.0)"]
 
 [[package]]
 name = "termynal"
@@ -1266,6 +1395,7 @@ version = "0.11.1"
 description = "A lightweight and modern animated terminal window"
 optional = false
 python-versions = ">=3.8.1,<4.0.0"
+groups = ["docs"]
 files = [
     {file = "termynal-0.11.1-py3-none-any.whl", hash = "sha256:553fc58b126a0482b71a442263d33a9b47fb69868a7fdd6cc36dc9f006aab7a2"},
     {file = "termynal-0.11.1.tar.gz", hash = "sha256:ce70d264a649d26365bf72b8cfc5aa2bf903adafebc1027347343779a8695ff0"},
@@ -1283,6 +1413,8 @@ version = "2.0.1"
 description = "A lil' TOML parser"
 optional = false
 python-versions = ">=3.7"
+groups = ["test"]
+markers = "python_version == \"3.10\""
 files = [
     {file = "tomli-2.0.1-py3-none-any.whl", hash = "sha256:939de3e7a6161af0c887ef91b7d41a53e7c5a1ca976325f429cb46ea9bc30ecc"},
     {file = "tomli-2.0.1.tar.gz", hash = "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"},
@@ -1294,6 +1426,7 @@ version = "4.66.4"
 description = "Fast, Extensible Progress Meter"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "tqdm-4.66.4-py3-none-any.whl", hash = "sha256:b75ca56b413b030bc3f00af51fd2c1a1a5eac6a0c1cca83cbb37a5c52abce644"},
     {file = "tqdm-4.66.4.tar.gz", hash = "sha256:e4d936c9de8727928f3be6079590e97d9abfe8d39a590be678eb5919ffc186bb"},
@@ -1314,6 +1447,7 @@ version = "0.9.4"
 description = "Typer, build great CLIs. Easy to code. Based on Python type hints."
 optional = false
 python-versions = ">=3.6"
+groups = ["main"]
 files = [
     {file = "typer-0.9.4-py3-none-any.whl", hash = "sha256:aa6c4a4e2329d868b80ecbaf16f807f2b54e192209d7ac9dd42691d63f7a54eb"},
     {file = "typer-0.9.4.tar.gz", hash = "sha256:f714c2d90afae3a7929fcd72a3abb08df305e1ff61719381384211c4070af57f"},
@@ -1338,6 +1472,7 @@ version = "4.11.0"
 description = "Backported and Experimental Type Hints for Python 3.8+"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "typing_extensions-4.11.0-py3-none-any.whl", hash = "sha256:c1f94d72897edaf4ce775bb7558d5b79d8126906a14ea5ed1635921406c0387a"},
     {file = "typing_extensions-4.11.0.tar.gz", hash = "sha256:83f085bd5ca59c80295fc2a82ab5dac679cbe02b9f33f7d83af68e241bea51b0"},
@@ -1349,14 +1484,15 @@ version = "1.26.18"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
+groups = ["main", "docs"]
 files = [
     {file = "urllib3-1.26.18-py2.py3-none-any.whl", hash = "sha256:34b97092d7e0a3a8cf7cd10e386f401b3737364026c45e622aa02903dffe0f07"},
     {file = "urllib3-1.26.18.tar.gz", hash = "sha256:f8ecc1bba5667413457c529ab955bf8c67b45db799d159066261719e328580a0"},
 ]
 
 [package.extras]
-brotli = ["brotli (==1.0.9)", "brotli (>=1.0.9)", "brotlicffi (>=0.8.0)", "brotlipy (>=0.6.0)"]
-secure = ["certifi", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "ipaddress", "pyOpenSSL (>=0.14)", "urllib3-secure-extra"]
+brotli = ["brotli (==1.0.9) ; os_name != \"nt\" and python_version < \"3\" and platform_python_implementation == \"CPython\"", "brotli (>=1.0.9) ; python_version >= \"3\" and platform_python_implementation == \"CPython\"", "brotlicffi (>=0.8.0) ; (os_name != \"nt\" or python_version >= \"3\") and platform_python_implementation != \"CPython\"", "brotlipy (>=0.6.0) ; os_name == \"nt\" and python_version < \"3\""]
+secure = ["certifi", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "ipaddress ; python_version == \"2.7\"", "pyOpenSSL (>=0.14)", "urllib3-secure-extra"]
 socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 
 [[package]]
@@ -1365,6 +1501,7 @@ version = "4.0.0"
 description = "Filesystem events monitoring"
 optional = false
 python-versions = ">=3.8"
+groups = ["docs"]
 files = [
     {file = "watchdog-4.0.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:39cb34b1f1afbf23e9562501673e7146777efe95da24fab5707b88f7fb11649b"},
     {file = "watchdog-4.0.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:c522392acc5e962bcac3b22b9592493ffd06d1fc5d755954e6be9f4990de932b"},
@@ -1406,6 +1543,7 @@ version = "1.16.0"
 description = "Module for decorators, wrappers and monkey patching."
 optional = false
 python-versions = ">=3.6"
+groups = ["main"]
 files = [
     {file = "wrapt-1.16.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:ffa565331890b90056c01db69c0fe634a776f8019c143a5ae265f9c6bc4bd6d4"},
     {file = "wrapt-1.16.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:e4fdb9275308292e880dcbeb12546df7f3e0f96c6b41197e0cf37d2826359020"},
@@ -1485,6 +1623,7 @@ version = "3.18.2"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "zipp-3.18.2-py3-none-any.whl", hash = "sha256:dce197b859eb796242b0622af1b8beb0a722d52aa2f57133ead08edd5bf5374e"},
     {file = "zipp-3.18.2.tar.gz", hash = "sha256:6278d9ddbcfb1f1089a88fde84481528b07b0e10474e09dcfe53dad4069fa059"},
@@ -1495,6 +1634,6 @@ docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.link
 testing = ["big-O", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
 
 [metadata]
-lock-version = "2.0"
-python-versions = "^3.9"
-content-hash = "173cc8bb0b09db652af4c46e683c3bafdf365328c34eccc6b0089909d92b0e7f"
+lock-version = "2.1"
+python-versions = ">=3.10,<3.14"
+content-hash = "b6337569ee7288887df90fbd50b7f3b375c3f0a7671a643945707a3e793c9448"
diff --git a/pyproject.toml b/pyproject.toml
index 4b86505..499e0ef 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "cnb-tools"
-version = "0.3.2"
+version = "0.3.3"
 description = "Convenience tools/functions for challenges and benchmarking on Synapse.org"
 license = "Apache-2.0"
 authors = ["Sage CNB Team <cnb@sagebase.org>"]
@@ -11,14 +11,13 @@ readme = "README.md"
 repository = "https://github.com/Sage-Bionetworks-Challenges/cnb-tools"
 documentation = "https://sage-bionetworks-challenges.github.io/cnb-tools"
 classifiers = [
-    "Development Status :: 3 - Alpha",
+    "Development Status :: 4 - Beta",
     "Intended Audience :: Developers",
     "Intended Audience :: Science/Research",
     "License :: OSI Approved :: Apache Software License",
     "Natural Language :: English",
     "Programming Language :: Python",
     "Programming Language :: Python :: 3",
-    "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
@@ -28,9 +27,9 @@ classifiers = [
 ]
 
 [tool.poetry.dependencies]
-python = "^3.9"
+python = ">=3.10,<3.14"
 typer = {extras = ["all"], version = "^0.9.0"}
-synapseclient = "^4.2.0"
+synapseclient = "^4.7.0"
 
 [tool.poetry.scripts]
 cnb-tools = "cnb_tools.main_cli:app"
@@ -39,14 +38,14 @@ cnb-tools = "cnb_tools.main_cli:app"
 "Bug Tracker" = "https://github.com/Sage-Bionetworks-Challenges/cnb-tools/issues"
 
 [tool.poetry.group.test.dependencies]
-pytest = "^7.4.3"
+pytest = ">=7.4.3"
 
 [tool.poetry.group.docs.dependencies]
-mkdocs = "^1.5.3"
-mkdocs-material = "^9.4.14"
-mkdocstrings = "^0.24.0"
-mkdocstrings-python = "^1.7.5"
-termynal = "^0.11.1"
+mkdocs = ">=1.5.3"
+mkdocs-material = ">=9.4.14"
+mkdocstrings = ">=0.24.0"
+mkdocstrings-python = ">=1.7.5"
+termynal = ">=0.11.1"
 
 [build-system]
 requires = ["poetry-core"]

From 937db9c5ae439c31f80c86dbe00100376d3bf3da Mon Sep 17 00:00:00 2001
From: verena <9377970+vpchung@users.noreply.github.com>
Date: Tue, 25 Nov 2025 12:05:31 -0800
Subject: [PATCH 02/11] update readmes to reflect version changes

---
 README.md     | 29 ++++++++++++++---------------
 docs/index.md | 26 +++++++++++++-------------
 2 files changed, 27 insertions(+), 28 deletions(-)

diff --git a/README.md b/README.md
index 42d7c6e..c1ac2f1 100644
--- a/README.md
+++ b/README.md
@@ -12,7 +12,7 @@
   <a href="https://pypi.org/project/cnb-tools/" title="cnb-tools on PyPI">
     <img alt="PyPI version" src="https://img.shields.io/pypi/v/cnb-tools?style=flat-square&logo=pypi&logoColor=white&color=%23679EC1">
   </a>
-  <img alt="Supported Python versions" src="https://img.shields.io/badge/python-3.9 | 3.10 | 3.11 | 3.12-%23EB8231?style=flat-square&logo=python&logoColor=white">
+  <img alt="Supported Python versions" src="https://img.shields.io/badge/python-3.10 | 3.11 | 3.12 -%23EB8231?style=flat-square&logo=python&logoColor=white">
   <a href="https://github.com/Sage-Bionetworks-Challenges/cnb-tools/blob/main/LICENSE" title="License">
     <img alt="License" src="https://img.shields.io/github/license/Sage-Bionetworks-Challenges/cnb-tools?style=flat-square&logo=github&color=%236DB56D">
   </a>
@@ -33,23 +33,23 @@ but not limited to, [DREAM Challenges].
 
 ## Requirements
 
-- [Python 3.9+]
+- [Python 3.10+]
 - [Synapse account]
 
 To fully utilize **cnb-tools**, you must have a Synapse account and
-provide your credentials to the tool.  To do so, create a `.synapseConfig`
-file in your home directory and enter the following:
+provide your credentials to the tool. First, generate a Synapse
+[Personal Access Token (PAT)] with all token permissions enabled.
 
-```yaml
-[authentication]
-authtoken=<YOUR PAT>
-```
+Next, run the following command, then follow the prompts to enter
+your Synapse username and PAT:
 
-Generate a new Synapse [Personal Access Token (PAT)] with all token
-permissions enabled, then copy-paste it into `authtoken`. Save the file.
+```console
+synapse config
+```
 
-For security, we recommend updating its permissions so that other
-users on your machine do not have read access to your credentials, e.g.
+This will create a `.synapseConfig` file in your home directory. For
+security, we recommend updating its permissions so that other users
+on your machine do not have read access to your credentials, e.g.
 
 ```console
 chmod 600 ~/.synapseConfig
@@ -58,10 +58,9 @@ chmod 600 ~/.synapseConfig
 ## Installation
 
 For best practice, use a Python environment to install **cnb-tools**
-rather than directly into your base env.  In our docs, we will be
+rather than directly into your base env. In our docs, we will be
 using [miniconda], but you can use [miniforge], [venv], [pyenv], etc.
 
-<!-- termynal -->
 ```console
 # Create a new env and activate it
 conda create -n cnb-tools python=3.12 -y
@@ -114,7 +113,7 @@ docker run --rm \
 [https://sage-bionetworks-challenges.github.io/cnb-tools]: https://sage-bionetworks-challenges.github.io/cnb-tools
 [https://github.com/Sage-Bionetworks-Challenges/cnb-tools]: https://github.com/Sage-Bionetworks-Challenges/cnb-tools
 [DREAM Challenges]: https://dreamchallenges.org/
-[Python 3.9+]: https://www.python.org/downloads/
+[Python 3.10+]: https://www.python.org/downloads/
 [Synapse account]: https://www.synapse.org/#!LoginPlace:0
 [Personal Access Token (PAT)]: https://www.synapse.org/#!PersonalAccessTokens:
 [miniconda]: https://docs.conda.io/projects/miniconda/en/latest/miniconda-install.html
diff --git a/docs/index.md b/docs/index.md
index 5992611..5bcd313 100644
--- a/docs/index.md
+++ b/docs/index.md
@@ -9,7 +9,7 @@
   <a href="https://pypi.org/project/cnb-tools/" title="cnb-tools on PyPI">
     <img alt="PyPI version" src="https://img.shields.io/pypi/v/cnb-tools?style=flat-square&logo=pypi&logoColor=white&color=%23679EC1">
   </a>
-  <img alt="Supported Python versions" src="https://img.shields.io/badge/python-3.9 | 3.10 | 3.11 | 3.12-%23EB8231?style=flat-square&logo=python&logoColor=white">
+  <img alt="Supported Python versions" src="https://img.shields.io/badge/python-3.10 | 3.11 | 3.12 -%23EB8231?style=flat-square&logo=python&logoColor=white">
   <a href="https://github.com/Sage-Bionetworks-Challenges/cnb-tools/blob/main/LICENSE" title="License">
     <img alt="License" src="https://img.shields.io/github/license/Sage-Bionetworks-Challenges/cnb-tools?style=flat-square&logo=github&color=%236DB56D">
   </a>
@@ -29,23 +29,23 @@ but not limited to, [DREAM Challenges].
 
 ## Requirements
 
-- [Python 3.9+]
+- [Python 3.10+]
 - [Synapse account]
 
 To fully utilize **cnb-tools**, you must have a Synapse account and
-provide your credentials to the tool.  To do so, create a `.synapseConfig`
-file in your home directory and enter the following:
+provide your credentials to the tool. First, generate a Synapse
+[Personal Access Token (PAT)] with all token permissions enabled.
 
-```yaml
-[authentication]
-authtoken=<YOUR PAT>
-```
+Next, run the following command, then follow the prompts to enter
+your Synapse username and PAT:
 
-Generate a new Synapse [Personal Access Token (PAT)] with all token
-permissions enabled, then copy-paste it into `authtoken`. Save the file.
+```console
+synapse config
+```
 
-For security, we recommend updating its permissions so that other
-users on your machine do not have read access to your credentials, e.g.
+This will create a `.synapseConfig` file in your home directory. For
+security, we recommend updating its permissions so that other users
+on your machine do not have read access to your credentials, e.g.
 
 <!-- termynal -->
 ```console
@@ -120,7 +120,7 @@ $ docker run --rm \
 [https://sage-bionetworks-challenges.github.io/cnb-tools]: https://sage-bionetworks-challenges.github.io/cnb-tools
 [https://github.com/Sage-Bionetworks-Challenges/cnb-tools]: https://github.com/Sage-Bionetworks-Challenges/cnb-tools
 [DREAM Challenges]: https://dreamchallenges.org/
-[Python 3.9+]: https://www.python.org/downloads/
+[Python 3.10+]: https://www.python.org/downloads/
 [Synapse account]: https://www.synapse.org/#!LoginPlace:0
 [Personal Access Token (PAT)]: https://www.synapse.org/#!PersonalAccessTokens:
 [miniconda]: https://docs.conda.io/projects/miniconda/en/latest/miniconda-install.html

From da746bf1effdabd912845e6ae2439e56888beaf5 Mon Sep 17 00:00:00 2001
From: verena <9377970+vpchung@users.noreply.github.com>
Date: Tue, 25 Nov 2025 14:20:49 -0800
Subject: [PATCH 03/11] convert base class into a module

---
 cnb_tools/classes/base.py | 53 ---------------------------------------
 cnb_tools/modules/base.py | 28 +++++++++++++++++++++
 2 files changed, 28 insertions(+), 53 deletions(-)
 delete mode 100644 cnb_tools/classes/base.py
 create mode 100644 cnb_tools/modules/base.py

diff --git a/cnb_tools/classes/base.py b/cnb_tools/classes/base.py
deleted file mode 100644
index 0d1723a..0000000
--- a/cnb_tools/classes/base.py
+++ /dev/null
@@ -1,53 +0,0 @@
-"""General class representing a Synapse entity."""
-
-import synapseclient
-from synapseclient.core.exceptions import SynapseNoCredentialsError
-
-
-class SynapseBase:
-    def __init__(self, uid=None):
-        self._syn = self._check_login()
-        self._uid = uid
-
-    @property
-    def syn(self) -> str:
-        """Synapse object with authentication."""
-        return self._syn
-
-    @syn.setter
-    def syn(self, _: str) -> None:
-        raise SynapseInternalError("syn object is read-only")
-
-    @property
-    def uid(self) -> str:
-        """Synapse entity's unique ID."""
-        return self._uid
-
-    @uid.setter
-    def uid(self, value: str) -> None:
-        self._uid = value
-
-    # pylint: disable=unsupported-binary-operation
-    @staticmethod
-    def _check_login() -> synapseclient.Synapse | None:
-        try:
-            return synapseclient.login(silent=True)
-        except SynapseNoCredentialsError as err:
-            raise SynapseLoginError(
-                f"⛔ {err}\n\n"
-                "Steps on how to provide your Synapse credentials to "
-                "cnb-tools are available here: "
-                "https://sage-bionetworks-challenges.github.io/cnb-tools/#requirements"
-            ) from err
-
-
-class SynapseInternalError(Exception):
-    pass
-
-
-class SynapseLoginError(SystemExit):
-    pass
-
-
-class UnknownSynapseID(SystemExit):
-    pass
diff --git a/cnb_tools/modules/base.py b/cnb_tools/modules/base.py
new file mode 100644
index 0000000..7a5ff2e
--- /dev/null
+++ b/cnb_tools/modules/base.py
@@ -0,0 +1,28 @@
+"""Base module for cnb-tools, including Synapse client management and custom exceptions."""
+
+import synapseclient
+from synapseclient.core.exceptions import SynapseNoCredentialsError
+
+
+def get_synapse_client():
+    try:
+        return synapseclient.login(silent=True)
+    except SynapseNoCredentialsError as err:
+        raise SynapseLoginError(
+            f"⛔ {err}\n\n"
+            "Steps on how to provide your Synapse credentials to "
+            "cnb-tools are available here: "
+            "https://sage-bionetworks-challenges.github.io/cnb-tools/#requirements"
+        ) from err
+
+
+class SynapseInternalError(Exception):
+    pass
+
+
+class SynapseLoginError(SystemExit):
+    pass
+
+
+class UnknownSynapseID(SystemExit):
+    pass

From 97b2d730593ae80f71d4084d4f61278e2ee5f5ff Mon Sep 17 00:00:00 2001
From: verena <9377970+vpchung@users.noreply.github.com>
Date: Mon, 1 Dec 2025 10:53:55 -0800
Subject: [PATCH 04/11] convert annotation class into a module

---
 cnb_tools/classes/annotation.py |  73 ------------------
 cnb_tools/modules/annotation.py | 128 ++++++++++++++++++++++++++++++++
 2 files changed, 128 insertions(+), 73 deletions(-)
 delete mode 100644 cnb_tools/classes/annotation.py
 create mode 100644 cnb_tools/modules/annotation.py

diff --git a/cnb_tools/classes/annotation.py b/cnb_tools/classes/annotation.py
deleted file mode 100644
index 7e914d3..0000000
--- a/cnb_tools/classes/annotation.py
+++ /dev/null
@@ -1,73 +0,0 @@
-"""Class representing annotations of a challenge submission."""
-
-import json
-
-from synapseclient import SubmissionStatus
-from synapseclient.core.exceptions import SynapseHTTPError
-from synapseclient.core.retry import with_retry
-
-from cnb_tools.classes.base import SynapseBase, UnknownSynapseID
-
-
-class SubmissionAnnotation(SynapseBase):
-    def __init__(self, sub_id: int):
-        super().__init__(sub_id)
-        try:
-            self._curr_annotations = self.syn.getSubmissionStatus(sub_id)
-        except SynapseHTTPError as err:
-            raise UnknownSynapseID(
-                f"⛔ {err.response.json().get('reason')}. "
-                "Check the ID and try again."
-            ) from err
-
-    @property
-    def curr_annotations(self) -> SubmissionStatus:
-        """Submission's current list of annotations."""
-        return self._curr_annotations
-
-    @curr_annotations.setter
-    def curr_annotations(self, value: SubmissionStatus):
-        self._curr_annotations = value
-
-    def __str__(self) -> str:
-        to_print = f"     Status: {self.curr_annotations.status}\n"
-        to_print += "Annotations:\n"
-        to_print += json.dumps(self.curr_annotations.submissionAnnotations, indent=2)
-        return to_print
-
-    # pylint: disable=unsupported-binary-operation
-    def update(
-            self,
-            new_annots: dict[str, str | int | float | bool],
-            verbose: bool
-        ) -> None:
-        self.curr_annotations.submissionAnnotations.update(new_annots)
-        self.curr_annotations = self.syn.store(self.curr_annotations)
-        print(f"Submission ID {self.uid} annotations updated.")
-
-        if verbose:
-            print("Annotations:")
-            print(json.dumps(self.curr_annotations.submissionAnnotations, indent=2))
-
-    def update_with_file(self, annots_file: str, verbose: bool) -> None:
-        with open(annots_file, encoding="utf-8") as f:
-            new_annots = json.load(f)
-
-        # Filter annotations with null and empty-list values
-        new_annots = {
-            key: value
-            for key, value in new_annots.items()
-            if value not in [None, []]
-        }
-        with_retry(
-            lambda: self.update(new_annots, verbose),
-            wait=3,
-            retries=10,
-            retry_status_codes=[412, 429, 500, 502, 503, 504],
-            verbose=True,
-        )
-
-    def update_status(self, new_status: str) -> None:
-        self.curr_annotations.status = new_status
-        self.syn.store(self.curr_annotations)
-        print(f"Updated submission ID {self.uid} to status: {new_status}")
diff --git a/cnb_tools/modules/annotation.py b/cnb_tools/modules/annotation.py
new file mode 100644
index 0000000..53ffefd
--- /dev/null
+++ b/cnb_tools/modules/annotation.py
@@ -0,0 +1,128 @@
+"""Module for managing the annotations of challenge submissions.
+
+This module provides utility functions that extend synapseclient for managing
+submission annotations in Synapse challenges.
+"""
+
+import json
+
+from synapseclient import SubmissionStatus
+from synapseclient.core.exceptions import SynapseHTTPError
+from synapseclient.core.retry import with_retry
+
+from cnb_tools.modules.base import get_synapse_client, UnknownSynapseID
+
+
+def get_submission_status(submission_id: int) -> SubmissionStatus:
+    """Get the submission status object containing annotations.
+
+    Args:
+        submission_id: ID of the submission
+
+    Returns:
+        SubmissionStatus object with current annotations
+
+    Raises:
+        UnknownSynapseID: If the submission ID is invalid
+    """
+    syn = get_synapse_client()
+    try:
+        return syn.getSubmissionStatus(submission_id)
+    except SynapseHTTPError as err:
+        raise UnknownSynapseID(
+            f"⛔ {err.response.json().get('reason')}. " "Check the ID and try again."
+        ) from err
+
+
+def format_annotations(submission_status: SubmissionStatus) -> str:
+    """Format submission annotations for display.
+
+    Args:
+        submission_status: SubmissionStatus object
+
+    Returns:
+        Formatted string representation of status and annotations
+    """
+    output = f"     Status: {submission_status.status}\n"
+    output += "Annotations:\n"
+    output += json.dumps(submission_status.submissionAnnotations, indent=2)
+    return output
+
+
+def update_annotations(
+    submission_id: int,
+    new_annotations: dict[str, str | int | float | bool],
+    verbose: bool = False,
+) -> SubmissionStatus:
+    """Update submission annotations.
+
+    Args:
+        submission_id: ID of the submission
+        new_annotations: Dictionary of annotations to add/update
+        verbose: If True, print updated annotations
+
+    Returns:
+        Updated SubmissionStatus object
+    """
+    syn = get_synapse_client()
+    status = get_submission_status(submission_id)
+    status.submissionAnnotations.update(new_annotations)
+    status = syn.store(status)
+
+    print(f"Submission ID {submission_id} annotations updated.")
+
+    if verbose:
+        print("Annotations:")
+        print(json.dumps(status.submissionAnnotations, indent=2))
+
+    return status
+
+
+def update_annotations_from_file(
+    submission_id: int, annots_file: str, verbose: bool = False
+) -> SubmissionStatus:
+    """Update submission annotations from a JSON file.
+
+    Args:
+        submission_id: ID of the submission
+        annots_file: Path to JSON file containing annotations
+        verbose: If True, print updated annotations
+
+    Returns:
+        Updated SubmissionStatus object
+    """
+    with open(annots_file, encoding="utf-8") as f:
+        new_annotations = json.load(f)
+
+    # Filter annotations with null and empty-list values
+    new_annotations = {
+        key: value for key, value in new_annotations.items() if value not in [None, []]
+    }
+
+    return with_retry(
+        lambda: update_annotations(submission_id, new_annotations, verbose),
+        wait=3,
+        retries=10,
+        retry_status_codes=[412, 429, 500, 502, 503, 504],
+        verbose=True,
+    )
+
+
+def update_submission_status(submission_id: int, new_status: str) -> SubmissionStatus:
+    """Update submission status.
+
+    Args:
+        submission_id: ID of the submission
+        new_status: New status value (e.g., 'ACCEPTED', 'REJECTED', 'SCORED')
+
+    Returns:
+        Updated SubmissionStatus object
+    """
+    syn = get_synapse_client()
+    status = get_submission_status(submission_id)
+    status.status = new_status
+    status = syn.store(status)
+
+    print(f"Updated submission ID {submission_id} to status: {new_status}")
+
+    return status

From 14418ecb7d7b2fcea77b35a45391b9156ce074fc Mon Sep 17 00:00:00 2001
From: verena <9377970+vpchung@users.noreply.github.com>
Date: Mon, 1 Dec 2025 10:54:08 -0800
Subject: [PATCH 05/11] convert participant class into a module

---
 cnb_tools/classes/participant.py | 36 --------------------
 cnb_tools/modules/participant.py | 57 ++++++++++++++++++++++++++++++++
 2 files changed, 57 insertions(+), 36 deletions(-)
 delete mode 100644 cnb_tools/classes/participant.py
 create mode 100644 cnb_tools/modules/participant.py

diff --git a/cnb_tools/classes/participant.py b/cnb_tools/classes/participant.py
deleted file mode 100644
index b2ebc22..0000000
--- a/cnb_tools/classes/participant.py
+++ /dev/null
@@ -1,36 +0,0 @@
-"""Class representing a submission team or individual participant."""
-
-import sys
-
-import typer
-from synapseclient import Team
-from synapseclient.core.exceptions import SynapseHTTPError
-
-from cnb_tools.classes.base import SynapseBase
-
-
-class Participant(SynapseBase):
-    def __str__(self) -> str:
-        try:
-            return self.syn.getTeam(self.uid).get("name")
-        except SynapseHTTPError:
-            return self.syn.getUserProfile(self.uid).get("userName")
-
-    # pylint: disable=unsupported-binary-operation
-    def create_team(
-        self,
-        name: str,
-        description: str | None = None,
-        can_public_join: bool = False
-    ) -> Team:
-        try:
-            team = self.syn.getTeam(name)
-            use_team = typer.confirm(f"Team '{name}' already exists. Use this team?")
-            if not use_team:
-                sys.exit("OK. Try again with a new challenge name.")
-        except ValueError:
-            team = Team(
-                name=name, description=description, canPublicJoin=can_public_join
-            )
-            # team = self.syn.store(team)
-        return team
diff --git a/cnb_tools/modules/participant.py b/cnb_tools/modules/participant.py
new file mode 100644
index 0000000..df26593
--- /dev/null
+++ b/cnb_tools/modules/participant.py
@@ -0,0 +1,57 @@
+"""Module for managing submission teams or individual participants.
+
+This module provides utility functions that extend synapseclient for managing
+teams and participants in Synapse challenges.
+"""
+
+import sys
+
+import typer
+from synapseclient import Team
+from synapseclient.core.exceptions import SynapseHTTPError
+
+from cnb_tools.modules.base import get_synapse_client
+
+
+def get_participant_name(participant_id: int) -> str:
+    """Get the name of a participant (team or user).
+
+    Args:
+        participant_id: Team ID or User ID
+
+    Returns:
+        Team name or username
+    """
+    syn = get_synapse_client()
+    try:
+        return syn.getTeam(participant_id).get("name")
+    except SynapseHTTPError:
+        return syn.getUserProfile(participant_id).get("userName")
+
+
+def create_team(
+    name: str, description: str | None = None, can_public_join: bool = False
+) -> Team:
+    """Create a new team or get an existing team by name.
+
+    Args:
+        name: Team name
+        description: Team description (optional)
+        can_public_join: Whether the team can be joined publicly
+
+    Returns:
+        Team object (existing or new)
+
+    Raises:
+        SystemExit: If user chooses not to use an existing team
+    """
+    syn = get_synapse_client()
+    try:
+        team = syn.getTeam(name)
+        use_team = typer.confirm(f"Team '{name}' already exists. Use this team?")
+        if not use_team:
+            sys.exit("OK. Try again with a new challenge name.")
+    except ValueError:
+        team = Team(name=name, description=description, canPublicJoin=can_public_join)
+        # team = syn.store(team)
+    return team

From d2604685901bd8a79e04ab3a5af8ec6dc0050ef7 Mon Sep 17 00:00:00 2001
From: verena <9377970+vpchung@users.noreply.github.com>
Date: Mon, 1 Dec 2025 10:54:21 -0800
Subject: [PATCH 06/11] convert queue class into a module

---
 cnb_tools/classes/queue.py | 34 ----------------------
 cnb_tools/modules/queue.py | 59 ++++++++++++++++++++++++++++++++++++++
 2 files changed, 59 insertions(+), 34 deletions(-)
 delete mode 100644 cnb_tools/classes/queue.py
 create mode 100644 cnb_tools/modules/queue.py

diff --git a/cnb_tools/classes/queue.py b/cnb_tools/classes/queue.py
deleted file mode 100644
index 70a802e..0000000
--- a/cnb_tools/classes/queue.py
+++ /dev/null
@@ -1,34 +0,0 @@
-"""Class representing a challenge submission evaluation queue."""
-
-from synapseclient import Evaluation
-from synapseclient.core.exceptions import SynapseHTTPError
-
-from cnb_tools.classes.base import SynapseBase, UnknownSynapseID
-
-
-class Queue(SynapseBase):
-    def __init__(self, uid):
-        super().__init__(uid)
-        try:
-            self._queue = self.syn.getEvaluation(uid)
-        except SynapseHTTPError as err:
-            raise UnknownSynapseID(
-                f"⛔ {err.response.json().get('reason')}. "
-                "Check the ID and try again."
-            ) from err
-
-    @property
-    def queue(self) -> Evaluation:
-        """Synapse evaluation queue."""
-        return self._queue
-
-    @queue.setter
-    def queue(self, value: Evaluation) -> None:
-        self._queue = value
-
-    def __str__(self) -> str:
-        return self.queue.name
-
-    def get_challenge_name(self) -> str:
-        parent_id = self.queue.contentSource
-        return self.syn.get(parent_id).name
diff --git a/cnb_tools/modules/queue.py b/cnb_tools/modules/queue.py
new file mode 100644
index 0000000..637b0e9
--- /dev/null
+++ b/cnb_tools/modules/queue.py
@@ -0,0 +1,59 @@
+"""Module for managing the challenge submission evaluation queues.
+
+This module provides utility functions that extend synapseclient for managing
+evaluation queues in Synapse challenges.
+"""
+
+from synapseclient import Evaluation
+from synapseclient.core.exceptions import SynapseHTTPError
+
+from cnb_tools.modules.base import get_synapse_client, UnknownSynapseID
+
+
+def get_evaluation(evaluation_id: int) -> Evaluation:
+    """Get an evaluation queue by ID.
+
+    Args:
+        evaluation_id: Evaluation queue ID
+
+    Returns:
+        Evaluation object
+
+    Raises:
+        UnknownSynapseID: If the evaluation ID is invalid
+    """
+    syn = get_synapse_client()
+    try:
+        return syn.getEvaluation(evaluation_id)
+    except SynapseHTTPError as err:
+        raise UnknownSynapseID(
+            f"⛔ {err.response.json().get('reason')}. " "Check the ID and try again."
+        ) from err
+
+
+def get_evaluation_name(evaluation_id: int) -> str:
+    """Get the name of an evaluation queue.
+
+    Args:
+        evaluation_id: Evaluation queue ID
+
+    Returns:
+        Evaluation queue name
+    """
+    evaluation = get_evaluation(evaluation_id)
+    return evaluation.name
+
+
+def get_challenge_name_from_evaluation(evaluation_id: int) -> str:
+    """Get the challenge name for an evaluation queue.
+
+    Args:
+        evaluation_id: Evaluation queue ID
+
+    Returns:
+        Challenge name
+    """
+    syn = get_synapse_client()
+    evaluation = get_evaluation(evaluation_id)
+    parent_id = evaluation.contentSource
+    return syn.get(parent_id).name

From c1cba65343917bb79c82565a5fbc72e74813ccdb Mon Sep 17 00:00:00 2001
From: verena <9377970+vpchung@users.noreply.github.com>
Date: Mon, 1 Dec 2025 10:55:49 -0800
Subject: [PATCH 07/11] convert submission class into a module

---
 cnb_tools/classes/submission.py      |  61 -------------
 cnb_tools/commands/submission_cli.py |  24 ++---
 cnb_tools/modules/submission.py      | 131 +++++++++++++++++++++++++++
 3 files changed, 139 insertions(+), 77 deletions(-)
 delete mode 100644 cnb_tools/classes/submission.py
 create mode 100644 cnb_tools/modules/submission.py

diff --git a/cnb_tools/classes/submission.py b/cnb_tools/classes/submission.py
deleted file mode 100644
index 2347274..0000000
--- a/cnb_tools/classes/submission.py
+++ /dev/null
@@ -1,61 +0,0 @@
-"""Class representing a challenge submission."""
-
-from pathlib import Path
-from synapseclient.core.exceptions import SynapseHTTPError
-
-from cnb_tools.classes.annotation import SubmissionAnnotation
-from cnb_tools.classes.base import SynapseBase, UnknownSynapseID
-from cnb_tools.classes.participant import Participant
-from cnb_tools.classes.queue import Queue
-
-
-class Submission(SynapseBase):
-    def __init__(self, sub_id: int):
-        super().__init__(sub_id)
-        try:
-            self._submission = self.syn.getSubmission(sub_id, downloadFile=False)
-        except SynapseHTTPError as err:
-            raise UnknownSynapseID(
-                f"⛔ {err.response.json().get('reason')}. "
-                "Check the ID and try again."
-            ) from err
-
-    @property
-    def submission(self):
-        """Synapse submission."""
-        return self._submission
-
-    @submission.setter
-    def submission(self, value) -> None:
-        self._sumission = value
-
-    def delete(self) -> None:
-        self.syn.delete(self.submission)
-        print(f"Submission deleted: {self.uid}")
-
-    def download(self, dest) -> None:
-        if "dockerDigest" in self.submission:
-            print(
-                f"Submission ID {self.uid} is a Docker image 🐳 To "
-                "'download', run the following:\n\n"
-                f"docker pull {self.submission.dockerRepositoryName}"
-                f"@{self.submission.dockerDigest}\n\n"
-                "If you receive an error, try logging in first with: "
-                "docker login docker.synapse.org"
-            )
-        else:
-            self.syn.getSubmission(self.uid, downloadLocation=dest)
-            location = Path.cwd() if str(dest) == "." else dest
-            print(f"Submission ID {self.uid} downloaded to: {location}")
-
-    def info(self, verbose) -> None:
-        challenge = Queue(self.submission.evaluationId).get_challenge_name()
-        submitter_id = self.submission.get("teamId") or self.submission.get("userId")
-        submitter = Participant(submitter_id)
-        print(f"         ID: {self.uid}")
-        print(f"  Challenge: {challenge}")
-        print(f"       Date: {self.submission.createdOn[:10]}")
-        print(f"  Submitter: {submitter}")
-        if verbose:
-            annotations = SubmissionAnnotation(self.uid)
-            print(annotations)
diff --git a/cnb_tools/commands/submission_cli.py b/cnb_tools/commands/submission_cli.py
index 79df49f..5dacd17 100644
--- a/cnb_tools/commands/submission_cli.py
+++ b/cnb_tools/commands/submission_cli.py
@@ -13,9 +13,8 @@
 from typing_extensions import Annotated
 import typer
 
-from cnb_tools.classes.base import UnknownSynapseID
-from cnb_tools.classes.annotation import SubmissionAnnotation
-from cnb_tools.classes.submission import Submission
+from cnb_tools.modules.base import UnknownSynapseID
+from cnb_tools.modules import annotation, submission
 
 
 class Status(str, Enum):
@@ -49,8 +48,7 @@ def annotate(
     ] = False,
 ):
     """Annotate one or more submission(s) with a JSON file."""
-    submission_annots = SubmissionAnnotation(submission_id)
-    submission_annots.update_with_file(json_file, verbose)
+    annotation.update_annotations_from_file(submission_id, str(json_file), verbose)
 
 
 @app.command()
@@ -70,8 +68,7 @@ def change_status(
     """Update one or more submission statuses."""
     for submission_id in submission_ids:
         try:
-            submission_annots = SubmissionAnnotation(submission_id)
-            submission_annots.update_status(new_status)
+            annotation.update_submission_status(submission_id, new_status.value)
         except UnknownSynapseID as err:
             if skip_errors:
                 print(f"Unknown submission ID: {submission_id} - skipping...")
@@ -110,8 +107,7 @@ def delete(
     if force:
         for submission_id in submission_ids:
             try:
-                submission = Submission(submission_id)
-                submission.delete()
+                submission.delete_submission(submission_id)
             except UnknownSynapseID as err:
                 if skip_errors:
                     print(f"Unknown submission ID: {submission_id} - skipping...")
@@ -134,8 +130,7 @@ def download(
     ] = ".",
 ):
     """Get a submission (file/Docker image)"""
-    submission = Submission(submission_id)
-    submission.download(dest)
+    submission.download_submission(submission_id, str(dest))
 
 
 @app.command()
@@ -154,8 +149,7 @@ def info(
     ] = False,
 ):
     """Get information about a submission"""
-    submission = Submission(submission_id)
-    submission.info(verbose)
+    submission.print_submission_info(submission_id, verbose)
 
 
 @app.command()
@@ -173,7 +167,5 @@ def reset(
 ):
     """Reset one or more submission to RECEIVED."""
     change_status(
-        submission_ids=submission_ids,
-        new_status="RECEIVED",
-        skip_errors=skip_errors
+        submission_ids=submission_ids, new_status="RECEIVED", skip_errors=skip_errors
     )
diff --git a/cnb_tools/modules/submission.py b/cnb_tools/modules/submission.py
new file mode 100644
index 0000000..0efed20
--- /dev/null
+++ b/cnb_tools/modules/submission.py
@@ -0,0 +1,131 @@
+"""Module for managing challenge submissions.
+
+This module provides utility functions that extend synapseclient for managing
+submissions in Synapse challenges.
+"""
+
+from pathlib import Path
+from synapseclient import Submission as SynapseSubmission
+from synapseclient.core.exceptions import SynapseHTTPError
+
+from cnb_tools.modules.base import get_synapse_client, UnknownSynapseID
+from cnb_tools.modules import annotation
+
+
+def get_submission(submission_id: int, download_file: bool = False) -> SynapseSubmission:
+    """Get a submission by ID.
+    
+    Args:
+        submission_id: ID of the submission
+        download_file: If True, download the submission file
+        
+    Returns:
+        Synapse Submission object
+        
+    Raises:
+        UnknownSynapseID: If the submission ID is invalid
+    """
+    syn = get_synapse_client()
+    try:
+        return syn.getSubmission(submission_id, downloadFile=download_file)
+    except SynapseHTTPError as err:
+        raise UnknownSynapseID(
+            f"⛔ {err.response.json().get('reason')}. "
+            "Check the ID and try again."
+        ) from err
+
+
+def delete_submission(submission_id: int) -> None:
+    """Delete a submission.
+    
+    Args:
+        submission_id: ID of the submission to delete
+    """
+    syn = get_synapse_client()
+    submission = get_submission(submission_id)
+    syn.delete(submission)
+    print(f"Submission deleted: {submission_id}")
+
+
+def download_submission(submission_id: int, dest: str = ".") -> None:
+    """Download a submission file or display Docker pull command.
+    
+    Args:
+        submission_id: ID of the submission
+        dest: Destination directory for download (default: current directory)
+    """
+    syn = get_synapse_client()
+    submission = get_submission(submission_id)
+    
+    if "dockerDigest" in submission:
+        print(
+            f"Submission ID {submission_id} is a Docker image 🐳 To "
+            "'download', run the following:\n\n"
+            f"docker pull {submission.dockerRepositoryName}"
+            f"@{submission.dockerDigest}\n\n"
+            "If you receive an error, try logging in first with: "
+            "docker login docker.synapse.org"
+        )
+    else:
+        syn.getSubmission(submission_id, downloadLocation=dest)
+        location = Path.cwd() if str(dest) == "." else dest
+        print(f"Submission ID {submission_id} downloaded to: {location}")
+
+
+def get_submitter_name(submitter_id: int) -> str:
+    """Get the name of a submitter (team or user).
+    
+    Args:
+        submitter_id: Team ID or User ID
+        
+    Returns:
+        Team name or username
+    """
+    syn = get_synapse_client()
+    try:
+        return syn.getTeam(submitter_id).get("name")
+    except SynapseHTTPError:
+        return syn.getUserProfile(submitter_id).get("userName")
+
+
+def get_challenge_name(evaluation_id: int) -> str:
+    """Get the challenge name for an evaluation queue.
+    
+    Args:
+        evaluation_id: Evaluation queue ID
+        
+    Returns:
+        Challenge name
+    """
+    syn = get_synapse_client()
+    try:
+        evaluation = syn.getEvaluation(evaluation_id)
+        parent_id = evaluation.contentSource
+        return syn.get(parent_id).name
+    except SynapseHTTPError as err:
+        raise UnknownSynapseID(
+            f"⛔ {err.response.json().get('reason')}. "
+            "Check the ID and try again."
+        ) from err
+
+
+def print_submission_info(submission_id: int, verbose: bool = False) -> None:
+    """Print information about a submission.
+    
+    Args:
+        submission_id: ID of the submission
+        verbose: If True, also print submission annotations
+    """
+    submission = get_submission(submission_id)
+    challenge = get_challenge_name(submission.evaluationId)
+    submitter_id = submission.get("teamId") or submission.get("userId")
+    submitter = get_submitter_name(submitter_id)
+    
+    print(f"         ID: {submission_id}")
+    print(f"  Challenge: {challenge}")
+    print(f"       Date: {submission.createdOn[:10]}")
+    print(f"  Submitter: {submitter}")
+    
+    if verbose:
+        status = annotation.get_submission_status(submission_id)
+        print(annotation.format_annotations(status))

From 11a858b74749b9b770e8432228058245ab36f5c5 Mon Sep 17 00:00:00 2001
From: verena <9377970+vpchung@users.noreply.github.com>
Date: Mon, 1 Dec 2025 10:56:06 -0800
Subject: [PATCH 08/11] lint with black

---
 cnb_tools/main_cli.py           |  1 +
 cnb_tools/validation_toolkit.py | 10 ++--------
 2 files changed, 3 insertions(+), 8 deletions(-)

diff --git a/cnb_tools/main_cli.py b/cnb_tools/main_cli.py
index 06fc7ae..17bb07c 100644
--- a/cnb_tools/main_cli.py
+++ b/cnb_tools/main_cli.py
@@ -5,6 +5,7 @@
     $ cnb-tools --help
     $ cnb-tools --version
 """
+
 from typing import Optional
 from typing_extensions import Annotated
 import typer
diff --git a/cnb_tools/validation_toolkit.py b/cnb_tools/validation_toolkit.py
index 207d730..0e5af66 100644
--- a/cnb_tools/validation_toolkit.py
+++ b/cnb_tools/validation_toolkit.py
@@ -1,5 +1,3 @@
-from typing import Union
-
 from pandas import Series
 
 
@@ -100,9 +98,7 @@ def check_nan_values(pred_col: Series) -> str:
     return ""
 
 
-def check_binary_values(
-    pred_col: Series, label1: int = 0, label2: int = 1
-) -> str:
+def check_binary_values(pred_col: Series, label1: int = 0, label2: int = 1) -> str:
     """Check that values are binary (default: 0 or 1).
 
     Tip: Example Use Case
@@ -123,9 +119,7 @@ def check_binary_values(
 
 
 def check_values_range(
-    pred_col: Series,
-    min_val: Union[int, float] = 0,
-    max_val: Union[int, float] = 1
+    pred_col: Series, min_val: int | float = 0, max_val: int | float = 1
 ) -> str:
     """Check that values are between min and max values, inclusive.
 

From 18aab0a893109d88f45dee137bffbdbdb6b6350b Mon Sep 17 00:00:00 2001
From: verena <9377970+vpchung@users.noreply.github.com>
Date: Mon, 1 Dec 2025 10:56:35 -0800
Subject: [PATCH 09/11] update release notes

---
 docs/changelog/release-notes.md | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/docs/changelog/release-notes.md b/docs/changelog/release-notes.md
index 23fb3bb..354dc13 100644
--- a/docs/changelog/release-notes.md
+++ b/docs/changelog/release-notes.md
@@ -7,7 +7,14 @@
 - Add How-To tutorial on how the Validation Toolkit can be used
 
 ### Bug fixes
-- Remove custom classes, as to prevent future confusion with synapseclient's classes
+- Refactor all modules to remove custom classes ([#24](https://github.com/Sage-Bionetworks-Challenges/cnb-tools/issues/24))
+  - Convert `annotation.py`, `submission.py`, `participant.py`, and `queue.py` to functional utilities
+  - All modules now act as extensions to `synapseclient` rather than wrapping it with custom classes
+  - Synapse authentication is now handled automatically within each function via `get_synapse_client()`
+  - Simplifies API usage and prevents confusion with synapseclient's native classes
+
+### Internal
+- Drop support for Python 3.9 (reached [end of life](https://devguide.python.org/versions/))
 
 ## 0.3.2
 

From 5729df372fa77ea4faea71f3f1e09270281d375b Mon Sep 17 00:00:00 2001
From: verena <9377970+vpchung@users.noreply.github.com>
Date: Mon, 1 Dec 2025 11:59:00 -0800
Subject: [PATCH 10/11] add unit tests

---
 .github/workflows/test.yml       |  40 +++++++
 docs/changelog/release-notes.md  |   1 +
 tests/__init__.py                |   0
 tests/conftest.py                | 107 +++++++++++++++++
 tests/test_annotation.py         | 137 +++++++++++++++++++++
 tests/test_participant.py        |  91 ++++++++++++++
 tests/test_queue.py              |  73 ++++++++++++
 tests/test_submission.py         | 196 +++++++++++++++++++++++++++++++
 tests/test_validation_toolkit.py | 125 ++++++++++++++++++++
 9 files changed, 770 insertions(+)
 create mode 100644 .github/workflows/test.yml
 delete mode 100644 tests/__init__.py
 create mode 100644 tests/conftest.py
 create mode 100644 tests/test_annotation.py
 create mode 100644 tests/test_participant.py
 create mode 100644 tests/test_queue.py
 create mode 100644 tests/test_submission.py
 create mode 100644 tests/test_validation_toolkit.py

diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
new file mode 100644
index 0000000..5ec24b0
--- /dev/null
+++ b/.github/workflows/test.yml
@@ -0,0 +1,40 @@
+name: Test
+
+on:
+  push:
+    branches: [ main, develop, fix-*, feat-* ]
+  pull_request:
+    branches: [ main ]
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ['3.10', '3.11', '3.12']
+    
+    steps:
+    - uses: actions/checkout@v4
+    
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v5
+      with:
+        python-version: ${{ matrix.python-version }}
+    
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install -e .
+        pip install pytest pytest-cov pandas
+        
+    - name: Run unit tests
+      run: |
+        python -m pytest tests/ -v --tb=short --cov=cnb_tools --cov-report=term-missing
+    
+    - name: Test CLI basics
+      run: |
+        cnb-tools
+        cnb-tools --help
+        cnb-tools submission --help
+
diff --git a/docs/changelog/release-notes.md b/docs/changelog/release-notes.md
index 354dc13..14ba41f 100644
--- a/docs/changelog/release-notes.md
+++ b/docs/changelog/release-notes.md
@@ -15,6 +15,7 @@
 
 ### Internal
 - Drop support for Python 3.9 (reached [end of life](https://devguide.python.org/versions/))
+- Add unit tests
 
 ## 0.3.2
 
diff --git a/tests/__init__.py b/tests/__init__.py
deleted file mode 100644
index e69de29..0000000
diff --git a/tests/conftest.py b/tests/conftest.py
new file mode 100644
index 0000000..480bfd8
--- /dev/null
+++ b/tests/conftest.py
@@ -0,0 +1,107 @@
+"""Shared pytest fixtures for cnb-tools tests."""
+
+import os
+import sys
+from unittest.mock import MagicMock
+
+import pandas as pd
+import pytest
+from synapseclient import Evaluation, SubmissionStatus
+
+
+def pytest_configure(config):
+    """Allow test scripts to import scripts from parent folder."""
+    src_path = os.path.abspath(os.path.join(os.path.dirname(__file__), ".."))
+    sys.path.insert(0, src_path)
+
+
+@pytest.fixture
+def mock_syn():
+    """Fixture for mocked Synapse client."""
+    return MagicMock()
+
+
+@pytest.fixture
+def mock_submission_status():
+    """Fixture for mocked SubmissionStatus."""
+    status = MagicMock(spec=SubmissionStatus)
+    status.status = "SCORED"
+    status.submissionAnnotations = MagicMock()
+    status.submissionAnnotations.__getitem__ = lambda self, key: {
+        "score": 0.95,
+        "passed": True,
+    }.get(key)
+    return status
+
+
+@pytest.fixture
+def mock_submission_file():
+    """Fixture for mocked file submission."""
+    sub = MagicMock()
+    sub.id = "12345"
+    sub.evaluationId = "98765"
+    sub.createdOn = "2025-11-26T10:30:00.000Z"
+    sub.get.side_effect = lambda key: {"teamId": 111, "userId": 222}.get(key)
+    return sub
+
+
+@pytest.fixture
+def mock_submission_docker():
+    """Fixture for mocked Docker submission."""
+    sub = MagicMock()
+    sub.id = "12345"
+    sub.evaluationId = "98765"
+    sub.dockerRepositoryName = "docker.synapse.org/syn12345/model"
+    sub.dockerDigest = "sha256:abc123"
+    sub.__contains__ = lambda self, key: key == "dockerDigest"
+    return sub
+
+
+@pytest.fixture
+def mock_evaluation():
+    """Fixture for mocked Evaluation."""
+    eval_obj = MagicMock(spec=Evaluation)
+    eval_obj.id = "98765"
+    eval_obj.name = "Test Queue"
+    eval_obj.contentSource = "syn12345"
+    return eval_obj
+
+
+@pytest.fixture
+def truth_ids():
+    """Fixture for truth IDs."""
+    return pd.Series(["id1", "id2", "id3"], name="ids")
+
+
+@pytest.fixture
+def pred_ids_valid():
+    """Fixture for valid prediction IDs."""
+    return pd.Series(["id1", "id2", "id3"], name="ids")
+
+
+@pytest.fixture
+def pred_ids_invalid():
+    """Fixture for invalid prediction IDs."""
+    return pd.Series(["id1", "id1", "id4"], name="ids")
+
+
+@pytest.fixture
+def pred_values_valid():
+    """Fixture for valid prediction values."""
+    return pd.DataFrame(
+        {
+            "predictions": [0, 1, 1],
+            "probabilities": [0.25, 0.6, 0.83],
+        }
+    )
+
+
+@pytest.fixture
+def pred_values_invalid():
+    """Fixture for invalid prediction values."""
+    return pd.DataFrame(
+        {
+            "predictions": [0, 1, None],
+            "probabilities": [-0.5, 1.0, 1.5],
+        }
+    )
diff --git a/tests/test_annotation.py b/tests/test_annotation.py
new file mode 100644
index 0000000..769241a
--- /dev/null
+++ b/tests/test_annotation.py
@@ -0,0 +1,137 @@
+"""Unit tests for cnb_tools.modules.annotation"""
+
+from unittest.mock import MagicMock, Mock, mock_open, patch
+
+import pytest
+from synapseclient.core.exceptions import SynapseHTTPError
+
+from cnb_tools.modules import annotation
+from cnb_tools.modules.base import UnknownSynapseID
+
+
+class TestGetSubmissionStatus:
+    """Tests for get_submission_status function"""
+
+    @patch("cnb_tools.modules.annotation.get_synapse_client")
+    def test_get_submission_status_success(
+        self, mock_get_client, mock_syn, mock_submission_status
+    ):
+        """Test successfully getting submission status"""
+        mock_get_client.return_value = mock_syn
+        mock_syn.getSubmissionStatus.return_value = mock_submission_status
+
+        result = annotation.get_submission_status(12345)
+
+        mock_syn.getSubmissionStatus.assert_called_once_with(12345)
+        assert result == mock_submission_status
+
+    @patch("cnb_tools.modules.annotation.get_synapse_client")
+    def test_get_submission_status_invalid_id(self, mock_get_client, mock_syn):
+        """Test error handling for invalid submission ID"""
+        mock_get_client.return_value = mock_syn
+        mock_response = Mock()
+        mock_response.json.return_value = {"reason": "Submission not found"}
+        mock_syn.getSubmissionStatus.side_effect = SynapseHTTPError(
+            response=mock_response
+        )
+
+        with pytest.raises(UnknownSynapseID) as exc_info:
+            annotation.get_submission_status(99999)
+        assert "Submission not found" in str(exc_info.value)
+
+
+class TestUpdateAnnotations:
+    """Tests for update_annotations function"""
+
+    @patch("cnb_tools.modules.annotation.get_synapse_client")
+    @patch("cnb_tools.modules.annotation.get_submission_status")
+    def test_update_annotations_success(
+        self, mock_get_status, mock_get_client, mock_syn, mock_submission_status, capsys
+    ):
+        """Test successfully updating annotations"""
+        mock_get_client.return_value = mock_syn
+        mock_get_status.return_value = mock_submission_status
+        mock_syn.store.return_value = mock_submission_status
+
+        # Mock the submissionAnnotations attribute as a dictionary
+        mock_submission_status.submissionAnnotations = MagicMock()
+
+        new_annots = {"new_field": "value"}
+        result = annotation.update_annotations(12345, new_annots, verbose=False)
+
+        mock_submission_status.submissionAnnotations.update.assert_called_once_with(
+            new_annots
+        )
+        mock_syn.store.assert_called_once_with(mock_submission_status)
+
+        captured = capsys.readouterr()
+        assert "Submission ID 12345 annotations updated" in captured.out
+        assert result == mock_submission_status
+
+    @patch("cnb_tools.modules.annotation.get_synapse_client")
+    @patch("cnb_tools.modules.annotation.get_submission_status")
+    def test_update_annotations_verbose(
+        self, mock_get_status, mock_get_client, mock_syn, mock_submission_status, capsys
+    ):
+        """Test updating annotations with verbose output"""
+        mock_get_client.return_value = mock_syn
+        mock_get_status.return_value = mock_submission_status
+        mock_syn.store.return_value = mock_submission_status
+
+        # Mock submissionAnnotations as a dict for JSON serialization
+        mock_submission_status.submissionAnnotations = {"score": 0.95, "passed": True}
+
+        annotation.update_annotations(12345, {"test": "value"}, verbose=True)
+
+        captured = capsys.readouterr()
+        assert "Annotations:" in captured.out
+        assert "score" in captured.out
+
+
+class TestUpdateAnnotationsFromFile:
+    """Tests for update_annotations_from_file function"""
+
+    @patch("cnb_tools.modules.annotation.with_retry")
+    @patch(
+        "builtins.open",
+        new_callable=mock_open,
+        read_data='{"score": 0.85, "status": "pass", "null_field": null, "empty_list": []}',
+    )
+    def test_update_annotations_from_file(self, mock_file, mock_retry):
+        """Test updating annotations from JSON file"""
+        mock_retry.return_value = MagicMock()
+
+        annotation.update_annotations_from_file(12345, "test.json", verbose=False)
+
+        mock_file.assert_called_once_with("test.json", encoding="utf-8")
+
+        # Verify with_retry was called
+        assert mock_retry.called
+
+        # Verify null and empty list values were filtered
+        call_args = mock_retry.call_args
+        assert call_args[1]["wait"] == 3
+        assert call_args[1]["retries"] == 10
+
+
+class TestUpdateSubmissionStatus:
+    """Tests for update_submission_status function"""
+
+    @patch("cnb_tools.modules.annotation.get_synapse_client")
+    @patch("cnb_tools.modules.annotation.get_submission_status")
+    def test_update_submission_status(
+        self, mock_get_status, mock_get_client, mock_syn, mock_submission_status, capsys
+    ):
+        """Test updating submission status"""
+        mock_get_client.return_value = mock_syn
+        mock_get_status.return_value = mock_submission_status
+        mock_syn.store.return_value = mock_submission_status
+
+        result = annotation.update_submission_status(12345, "ACCEPTED")
+
+        assert mock_submission_status.status == "ACCEPTED"
+        mock_syn.store.assert_called_once_with(mock_submission_status)
+
+        captured = capsys.readouterr()
+        assert "Updated submission ID 12345 to status: ACCEPTED" in captured.out
+        assert result == mock_submission_status
diff --git a/tests/test_participant.py b/tests/test_participant.py
new file mode 100644
index 0000000..181ee39
--- /dev/null
+++ b/tests/test_participant.py
@@ -0,0 +1,91 @@
+"""Unit tests for cnb_tools.modules.participant"""
+
+from unittest.mock import MagicMock, patch
+
+import pytest
+from synapseclient import Team
+from synapseclient.core.exceptions import SynapseHTTPError
+
+from cnb_tools.modules import participant
+
+
+class TestGetParticipantName:
+    """Tests for get_participant_name function"""
+
+    @patch("cnb_tools.modules.participant.get_synapse_client")
+    def test_get_participant_name_team(self, mock_get_client, mock_syn):
+        """Test getting team name"""
+        mock_get_client.return_value = mock_syn
+        mock_syn.getTeam.return_value = {"name": "Dream Team"}
+
+        result = participant.get_participant_name(12345)
+
+        assert result == "Dream Team"
+        mock_syn.getTeam.assert_called_once_with(12345)
+
+    @patch("cnb_tools.modules.participant.get_synapse_client")
+    def test_get_participant_name_user(self, mock_get_client, mock_syn):
+        """Test getting username when team lookup fails"""
+        mock_get_client.return_value = mock_syn
+        mock_syn.getTeam.side_effect = SynapseHTTPError(response=MagicMock())
+        mock_syn.getUserProfile.return_value = {"userName": "john_doe"}
+
+        result = participant.get_participant_name(67890)
+
+        assert result == "john_doe"
+        mock_syn.getUserProfile.assert_called_once_with(67890)
+
+
+class TestCreateTeam:
+    """Tests for create_team function"""
+
+    @patch("cnb_tools.modules.participant.typer.confirm")
+    @patch("cnb_tools.modules.participant.get_synapse_client")
+    def test_create_team_new(self, mock_get_client, mock_confirm, mock_syn):
+        """Test creating a new team"""
+        mock_get_client.return_value = mock_syn
+        mock_syn.getTeam.side_effect = ValueError("Team not found")
+
+        result = participant.create_team(
+            name="New Team", description="Test description", can_public_join=True
+        )
+
+        assert isinstance(result, Team)
+        assert result.name == "New Team"
+        assert result.description == "Test description"
+        assert result.canPublicJoin is True
+
+    @patch("cnb_tools.modules.participant.typer.confirm")
+    @patch("cnb_tools.modules.participant.get_synapse_client")
+    def test_create_team_existing_confirmed(
+        self, mock_get_client, mock_confirm, mock_syn
+    ):
+        """Test using an existing team when user confirms"""
+        mock_get_client.return_value = mock_syn
+        existing_team = MagicMock(spec=Team)
+        existing_team.name = "Dream Team"
+        mock_syn.getTeam.return_value = existing_team
+        mock_confirm.return_value = True
+
+        result = participant.create_team(name="Dream Team")
+
+        assert result == existing_team
+        mock_confirm.assert_called_once_with(
+            "Team 'Dream Team' already exists. Use this team?"
+        )
+
+    @patch("cnb_tools.modules.participant.typer.confirm")
+    @patch("cnb_tools.modules.participant.get_synapse_client")
+    def test_create_team_existing_declined(
+        self, mock_get_client, mock_confirm, mock_syn
+    ):
+        """Test declining to use existing team exits"""
+        mock_get_client.return_value = mock_syn
+        existing_team = MagicMock(spec=Team)
+        mock_syn.getTeam.return_value = existing_team
+        mock_confirm.return_value = False
+
+        with pytest.raises(SystemExit) as exc_info:
+            participant.create_team(name="Existing Team")
+
+        assert "Try again with a new challenge name" in str(exc_info.value)
diff --git a/tests/test_queue.py b/tests/test_queue.py
new file mode 100644
index 0000000..6a58d1b
--- /dev/null
+++ b/tests/test_queue.py
@@ -0,0 +1,73 @@
+"""Unit tests for cnb_tools.modules.queue"""
+
+from unittest.mock import MagicMock, Mock, patch
+
+import pytest
+from synapseclient.core.exceptions import SynapseHTTPError
+
+from cnb_tools.modules import queue
+from cnb_tools.modules.base import UnknownSynapseID
+
+
+class TestGetEvaluation:
+    """Tests for get_evaluation function"""
+
+    @patch("cnb_tools.modules.queue.get_synapse_client")
+    def test_get_evaluation_success(self, mock_get_client, mock_syn, mock_evaluation):
+        """Test successfully getting an evaluation"""
+        mock_get_client.return_value = mock_syn
+        mock_syn.getEvaluation.return_value = mock_evaluation
+
+        result = queue.get_evaluation(98765)
+
+        mock_syn.getEvaluation.assert_called_once_with(98765)
+        assert result == mock_evaluation
+
+    @patch("cnb_tools.modules.queue.get_synapse_client")
+    def test_get_evaluation_invalid_id(self, mock_get_client, mock_syn):
+        """Test error handling for invalid evaluation ID"""
+        mock_get_client.return_value = mock_syn
+        mock_response = Mock()
+        mock_response.json.return_value = {"reason": "Evaluation not found"}
+        mock_syn.getEvaluation.side_effect = SynapseHTTPError(response=mock_response)
+
+        with pytest.raises(UnknownSynapseID) as exc_info:
+            queue.get_evaluation(99999)
+
+        assert "Evaluation not found" in str(exc_info.value)
+
+
+class TestGetEvaluationName:
+    """Tests for get_evaluation_name function"""
+
+    @patch("cnb_tools.modules.queue.get_evaluation")
+    def test_get_evaluation_name(self, mock_get_eval, mock_evaluation):
+        """Test getting evaluation name"""
+        mock_get_eval.return_value = mock_evaluation
+
+        result = queue.get_evaluation_name(98765)
+
+        assert result == "Test Queue"
+        mock_get_eval.assert_called_once_with(98765)
+
+
+class TestGetChallengeNameFromEvaluation:
+    """Tests for get_challenge_name_from_evaluation function"""
+
+    @patch("cnb_tools.modules.queue.get_synapse_client")
+    @patch("cnb_tools.modules.queue.get_evaluation")
+    def test_get_challenge_name_from_evaluation(
+        self, mock_get_eval, mock_get_client, mock_syn, mock_evaluation
+    ):
+        """Test getting challenge name from evaluation"""
+        mock_get_eval.return_value = mock_evaluation
+        mock_get_client.return_value = mock_syn
+
+        mock_challenge = MagicMock()
+        mock_challenge.name = "Amazing Challenge"
+        mock_syn.get.return_value = mock_challenge
+
+        result = queue.get_challenge_name_from_evaluation(98765)
+
+        assert result == "Amazing Challenge"
+        mock_syn.get.assert_called_once_with("syn12345")
diff --git a/tests/test_submission.py b/tests/test_submission.py
new file mode 100644
index 0000000..76f778c
--- /dev/null
+++ b/tests/test_submission.py
@@ -0,0 +1,196 @@
+"""Unit tests for cnb_tools.modules.submission"""
+
+from unittest.mock import MagicMock, Mock, patch
+
+import pytest
+from synapseclient.core.exceptions import SynapseHTTPError
+
+from cnb_tools.modules import submission
+from cnb_tools.modules.base import UnknownSynapseID
+
+
+class TestGetSubmission:
+    """Tests for get_submission function"""
+
+    @patch("cnb_tools.modules.submission.get_synapse_client")
+    def test_get_submission_success(
+        self, mock_get_client, mock_syn, mock_submission_file
+    ):
+        """Test successfully getting a submission"""
+        mock_get_client.return_value = mock_syn
+        mock_syn.getSubmission.return_value = mock_submission_file
+
+        result = submission.get_submission(12345, download_file=False)
+
+        mock_syn.getSubmission.assert_called_once_with(12345, downloadFile=False)
+        assert result == mock_submission_file
+
+    @patch("cnb_tools.modules.submission.get_synapse_client")
+    def test_get_submission_invalid_id(self, mock_get_client, mock_syn):
+        """Test error handling for invalid submission ID"""
+        mock_get_client.return_value = mock_syn
+        mock_response = Mock()
+        mock_response.json.return_value = {"reason": "Submission not found"}
+        mock_syn.getSubmission.side_effect = SynapseHTTPError(response=mock_response)
+
+        with pytest.raises(UnknownSynapseID) as exc_info:
+            submission.get_submission(99999)
+
+        assert "Submission not found" in str(exc_info.value)
+
+
+class TestDeleteSubmission:
+    """Tests for delete_submission function"""
+
+    @patch("cnb_tools.modules.submission.get_synapse_client")
+    @patch("cnb_tools.modules.submission.get_submission")
+    def test_delete_submission(
+        self, mock_get_sub, mock_get_client, mock_syn, mock_submission_file, capsys
+    ):
+        """Test deleting a submission"""
+        mock_get_client.return_value = mock_syn
+        mock_get_sub.return_value = mock_submission_file
+
+        submission.delete_submission(12345)
+
+        mock_get_sub.assert_called_once_with(12345)
+        mock_syn.delete.assert_called_once_with(mock_submission_file)
+
+        captured = capsys.readouterr()
+        assert "Submission deleted: 12345" in captured.out
+
+
+class TestDownloadSubmission:
+    """Tests for download_submission function"""
+
+    @patch("cnb_tools.modules.submission.get_synapse_client")
+    @patch("cnb_tools.modules.submission.get_submission")
+    def test_download_submission_file(
+        self, mock_get_sub, mock_get_client, mock_syn, mock_submission_file, capsys
+    ):
+        """Test downloading a file submission"""
+        mock_get_client.return_value = mock_syn
+        mock_get_sub.return_value = mock_submission_file
+
+        submission.download_submission(12345, dest="/tmp")
+
+        mock_syn.getSubmission.assert_called_once_with(12345, downloadLocation="/tmp")
+
+        captured = capsys.readouterr()
+        assert "Submission ID 12345 downloaded to:" in captured.out
+
+    @patch("cnb_tools.modules.submission.get_synapse_client")
+    @patch("cnb_tools.modules.submission.get_submission")
+    def test_download_submission_docker(
+        self, mock_get_sub, mock_get_client, mock_syn, mock_submission_docker, capsys
+    ):
+        """Test 'downloading' a Docker submission (displays pull command)"""
+        mock_get_client.return_value = mock_syn
+        mock_get_sub.return_value = mock_submission_docker
+
+        submission.download_submission(12345)
+
+        captured = capsys.readouterr()
+        assert "Docker image" in captured.out
+        assert "docker pull" in captured.out
+        assert "docker.synapse.org/syn12345/model@sha256:abc123" in captured.out
+
+
+class TestGetSubmitterName:
+    """Tests for get_submitter_name function"""
+
+    @patch("cnb_tools.modules.submission.get_synapse_client")
+    def test_get_submitter_name_team(self, mock_get_client, mock_syn):
+        """Test getting team name"""
+        mock_get_client.return_value = mock_syn
+        mock_syn.getTeam.return_value = {"name": "Test Team"}
+
+        result = submission.get_submitter_name(111)
+
+        assert result == "Test Team"
+
+    @patch("cnb_tools.modules.submission.get_synapse_client")
+    def test_get_submitter_name_user(self, mock_get_client, mock_syn):
+        """Test getting username when team lookup fails"""
+        mock_get_client.return_value = mock_syn
+        mock_syn.getTeam.side_effect = SynapseHTTPError(response=Mock())
+        mock_syn.getUserProfile.return_value = {"userName": "testuser"}
+
+        result = submission.get_submitter_name(222)
+
+        assert result == "testuser"
+
+
+class TestGetChallengeName:
+    """Tests for get_challenge_name function"""
+
+    @patch("cnb_tools.modules.submission.get_synapse_client")
+    def test_get_challenge_name(self, mock_get_client, mock_syn):
+        """Test getting challenge name from evaluation"""
+        mock_get_client.return_value = mock_syn
+        mock_eval = MagicMock()
+        mock_eval.contentSource = "syn98765"
+        mock_syn.getEvaluation.return_value = mock_eval
+
+        mock_challenge = MagicMock()
+        mock_challenge.name = "Test Challenge"
+        mock_syn.get.return_value = mock_challenge
+
+        result = submission.get_challenge_name(12345)
+
+        assert result == "Test Challenge"
+        mock_syn.get.assert_called_once_with("syn98765")
+
+
+class TestPrintSubmissionInfo:
+    """Tests for print_submission_info function"""
+
+    @patch("cnb_tools.modules.submission.get_submission")
+    @patch("cnb_tools.modules.submission.get_challenge_name")
+    @patch("cnb_tools.modules.submission.get_submitter_name")
+    def test_print_submission_info_basic(
+        self,
+        mock_get_submitter,
+        mock_get_challenge,
+        mock_get_sub,
+        mock_submission_file,
+        capsys,
+    ):
+        """Test printing basic submission info"""
+        mock_get_sub.return_value = mock_submission_file
+        mock_get_challenge.return_value = "Test Challenge"
+        mock_get_submitter.return_value = "Test Team"
+
+        submission.print_submission_info(12345, verbose=False)
+
+        captured = capsys.readouterr()
+        assert "ID: 12345" in captured.out
+        assert "Challenge: Test Challenge" in captured.out
+        assert "Date: 2025-11-26" in captured.out
+        assert "Submitter: Test Team" in captured.out
+
+    @patch("cnb_tools.modules.submission.annotation")
+    @patch("cnb_tools.modules.submission.get_submission")
+    @patch("cnb_tools.modules.submission.get_challenge_name")
+    @patch("cnb_tools.modules.submission.get_submitter_name")
+    def test_print_submission_info_verbose(
+        self,
+        mock_get_submitter,
+        mock_get_challenge,
+        mock_get_sub,
+        mock_annotation,
+        mock_submission_file,
+    ):
+        """Test printing submission info with annotations"""
+        mock_get_sub.return_value = mock_submission_file
+        mock_get_challenge.return_value = "Test Challenge"
+        mock_get_submitter.return_value = "Test Team"
+
+        mock_status = MagicMock()
+        mock_annotation.get_submission_status.return_value = mock_status
+        mock_annotation.format_annotations.return_value = "Formatted annotations"
+
+        submission.print_submission_info(12345, verbose=True)
+
+        mock_annotation.get_submission_status.assert_called_once_with(12345)
+        mock_annotation.format_annotations.assert_called_once_with(mock_status)
diff --git a/tests/test_validation_toolkit.py b/tests/test_validation_toolkit.py
new file mode 100644
index 0000000..35ce01d
--- /dev/null
+++ b/tests/test_validation_toolkit.py
@@ -0,0 +1,125 @@
+"""Unit tests for cnb_tools.validation_toolkit"""
+
+from cnb_tools import validation_toolkit
+
+
+class TestCheckMissingKeys:
+    """Tests for check_missing_keys function"""
+
+    def test_no_missing_keys(self, truth_ids, pred_ids_valid):
+        """Test when all keys are present"""
+        result = validation_toolkit.check_missing_keys(truth_ids, pred_ids_valid)
+        assert result == ""
+
+    def test_missing_keys(self, truth_ids, pred_ids_invalid):
+        """Test when keys are missing"""
+        result = validation_toolkit.check_missing_keys(truth_ids, pred_ids_invalid)
+        assert "Found 2 missing ID(s)" in result
+
+    def test_missing_keys_verbose(self, truth_ids, pred_ids_invalid):
+        """Test missing keys with verbose output"""
+        result = validation_toolkit.check_missing_keys(
+            truth_ids, pred_ids_invalid, verbose=True
+        )
+        assert "Found 2 missing ID(s)" in result
+        assert "id2" in result
+        assert "id3" in result
+
+
+class TestCheckUnknownKeys:
+    """Tests for check_unknown_keys function"""
+
+    def test_no_unknown_keys(self, truth_ids, pred_ids_valid):
+        """Test when no unknown keys are present"""
+        result = validation_toolkit.check_unknown_keys(truth_ids, pred_ids_valid)
+        assert result == ""
+
+    def test_unknown_keys(self, truth_ids, pred_ids_invalid):
+        """Test when unknown keys are present"""
+        result = validation_toolkit.check_unknown_keys(truth_ids, pred_ids_invalid)
+        assert "Found 1 unknown ID(s)" in result
+
+    def test_unknown_keys_verbose(self, truth_ids, pred_ids_invalid):
+        """Test unknown keys with verbose output"""
+        result = validation_toolkit.check_unknown_keys(
+            truth_ids, pred_ids_invalid, verbose=True
+        )
+        assert "Found 1 unknown ID(s)" in result
+        assert "id4" in result
+
+
+class TestCheckDuplicateKeys:
+    """Tests for check_duplicate_keys function"""
+
+    def test_no_duplicates(self, pred_ids_valid):
+        """Test when no duplicate keys are present"""
+        result = validation_toolkit.check_duplicate_keys(pred_ids_valid)
+        assert result == ""
+
+    def test_duplicates(self, pred_ids_invalid):
+        """Test when duplicate keys are present"""
+        result = validation_toolkit.check_duplicate_keys(pred_ids_invalid)
+        assert "Found 1 duplicate ID(s)" in result
+
+    def test_duplicates_verbose(self, pred_ids_invalid):
+        """Test duplicate keys with verbose output"""
+        result = validation_toolkit.check_duplicate_keys(pred_ids_invalid, verbose=True)
+        assert "Found 1 duplicate ID(s)" in result
+        assert "id1" in result
+
+
+class TestCheckNanValues:
+    """Tests for check_nan_values function"""
+
+    def test_no_nan_values(self, pred_values_valid):
+        """Test when no NaN values are present"""
+        result = validation_toolkit.check_nan_values(pred_values_valid["predictions"])
+        assert result == ""
+
+    def test_with_nan_values(self, pred_values_invalid):
+        """Test when NaN values are present"""
+        result = validation_toolkit.check_nan_values(pred_values_invalid["predictions"])
+        assert "'predictions' column contains 1 NaN value(s)" in result
+
+
+class TestCheckBinaryValues:
+    """Tests for check_binary_values function"""
+
+    def test_valid_binary_values_default(self, pred_values_valid):
+        """Test valid binary values with default labels (0, 1)"""
+        result = validation_toolkit.check_binary_values(
+            pred_values_valid["predictions"]
+        )
+        assert result == ""
+
+    def test_invalid_binary_values(self, pred_values_invalid):
+        """Test invalid binary values"""
+        result = validation_toolkit.check_binary_values(
+            pred_values_invalid["predictions"]
+        )
+        assert "'predictions' values should only be 0 or 1" in result
+
+
+class TestCheckValuesRange:
+    """Tests for check_values_range function"""
+
+    def test_valid_range_default(self, pred_values_valid):
+        """Test values within default range [0, 1]"""
+        result = validation_toolkit.check_values_range(
+            pred_values_valid["probabilities"]
+        )
+        assert result == ""
+
+    def test_invalid_range_below_min(self, pred_values_invalid):
+        """Test values below minimum"""
+        result = validation_toolkit.check_values_range(
+            pred_values_invalid["probabilities"]
+        )
+        assert "'probabilities' values should be between [0, 1]" in result
+
+    def test_invalid_range_above_max(self, pred_values_invalid):
+        """Test values above maximum"""
+        result = validation_toolkit.check_values_range(
+            pred_values_invalid["probabilities"]
+        )
+        assert "'probabilities' values should be between [0, 1]" in result

From c1a2ee3596531621b4b2cc6fa9c77ea97699a18e Mon Sep 17 00:00:00 2001
From: verena <9377970+vpchung@users.noreply.github.com>
Date: Mon, 1 Dec 2025 14:37:49 -0800
Subject: [PATCH 11/11] constrain click version for typer compatibility

---
 poetry.lock    | 281 ++++++++++++++++++++++++++++++++++++++++++++++++-
 pyproject.toml |   2 +
 2 files changed, 280 insertions(+), 3 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 4251d05..2927b42 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -711,6 +711,157 @@ files = [
     {file = "nest_asyncio-1.6.0.tar.gz", hash = "sha256:6f172d5449aca15afd6c646851f4e31e02c598d553a667e38cafa997cfec55fe"},
 ]
 
+[[package]]
+name = "numpy"
+version = "2.2.6"
+description = "Fundamental package for array computing in Python"
+optional = false
+python-versions = ">=3.10"
+groups = ["main"]
+markers = "python_version == \"3.10\""
+files = [
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+
+[package.dependencies]
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+    {version = ">=1.22.4", markers = "python_version < \"3.11\""},
+    {version = ">=1.23.2", markers = "python_version == \"3.11\""},
+    {version = ">=1.26.0", markers = "python_version >= \"3.12\""},
+]
+python-dateutil = ">=2.8.2"
+pytz = ">=2020.1"
+tzdata = ">=2022.7"
+
+[package.extras]
+all = ["PyQt5 (>=5.15.9)", "SQLAlchemy (>=2.0.0)", "adbc-driver-postgresql (>=0.8.0)", "adbc-driver-sqlite (>=0.8.0)", "beautifulsoup4 (>=4.11.2)", "bottleneck (>=1.3.6)", "dataframe-api-compat (>=0.1.7)", "fastparquet (>=2022.12.0)", "fsspec (>=2022.11.0)", "gcsfs (>=2022.11.0)", "html5lib (>=1.1)", "hypothesis (>=6.46.1)", "jinja2 (>=3.1.2)", "lxml (>=4.9.2)", "matplotlib (>=3.6.3)", "numba (>=0.56.4)", "numexpr (>=2.8.4)", "odfpy (>=1.4.1)", "openpyxl (>=3.1.0)", "pandas-gbq (>=0.19.0)", "psycopg2 (>=2.9.6)", "pyarrow (>=10.0.1)", "pymysql (>=1.0.2)", "pyreadstat (>=1.2.0)", "pytest (>=7.3.2)", "pytest-xdist (>=2.2.0)", "python-calamine (>=0.1.7)", "pyxlsb (>=1.0.10)", "qtpy (>=2.3.0)", "s3fs (>=2022.11.0)", "scipy (>=1.10.0)", "tables (>=3.8.0)", "tabulate (>=0.9.0)", "xarray (>=2022.12.0)", "xlrd (>=2.0.1)", "xlsxwriter (>=3.0.5)", "zstandard (>=0.19.0)"]
+aws = ["s3fs (>=2022.11.0)"]
+clipboard = ["PyQt5 (>=5.15.9)", "qtpy (>=2.3.0)"]
+compression = ["zstandard (>=0.19.0)"]
+computation = ["scipy (>=1.10.0)", "xarray (>=2022.12.0)"]
+consortium-standard = ["dataframe-api-compat (>=0.1.7)"]
+excel = ["odfpy (>=1.4.1)", "openpyxl (>=3.1.0)", "python-calamine (>=0.1.7)", "pyxlsb (>=1.0.10)", "xlrd (>=2.0.1)", "xlsxwriter (>=3.0.5)"]
+feather = ["pyarrow (>=10.0.1)"]
+fss = ["fsspec (>=2022.11.0)"]
+gcp = ["gcsfs (>=2022.11.0)", "pandas-gbq (>=0.19.0)"]
+hdf5 = ["tables (>=3.8.0)"]
+html = ["beautifulsoup4 (>=4.11.2)", "html5lib (>=1.1)", "lxml (>=4.9.2)"]
+mysql = ["SQLAlchemy (>=2.0.0)", "pymysql (>=1.0.2)"]
+output-formatting = ["jinja2 (>=3.1.2)", "tabulate (>=0.9.0)"]
+parquet = ["pyarrow (>=10.0.1)"]
+performance = ["bottleneck (>=1.3.6)", "numba (>=0.56.4)", "numexpr (>=2.8.4)"]
+plot = ["matplotlib (>=3.6.3)"]
+postgresql = ["SQLAlchemy (>=2.0.0)", "adbc-driver-postgresql (>=0.8.0)", "psycopg2 (>=2.9.6)"]
+pyarrow = ["pyarrow (>=10.0.1)"]
+spss = ["pyreadstat (>=1.2.0)"]
+sql-other = ["SQLAlchemy (>=2.0.0)", "adbc-driver-postgresql (>=0.8.0)", "adbc-driver-sqlite (>=0.8.0)"]
+test = ["hypothesis (>=6.46.1)", "pytest (>=7.3.2)", "pytest-xdist (>=2.2.0)"]
+xml = ["lxml (>=4.9.2)"]
+
 [[package]]
 name = "pathspec"
 version = "0.12.1"
@@ -1099,7 +1350,7 @@ version = "2.9.0.post0"
 description = "Extensions to the standard Python datetime module"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
-groups = ["docs"]
+groups = ["main", "docs"]
 files = [
     {file = "python-dateutil-2.9.0.post0.tar.gz", hash = "sha256:37dd54208da7e1cd875388217d5e00ebd4179249f90fb72437e91a35459a0ad3"},
     {file = "python_dateutil-2.9.0.post0-py2.py3-none-any.whl", hash = "sha256:a8b2bc7bffae282281c8140a97d3aa9c14da0b136dfe83f850eea9a5f7470427"},
@@ -1108,6 +1359,18 @@ files = [
 [package.dependencies]
 six = ">=1.5"
 
+[[package]]
+name = "pytz"
+version = "2025.2"
+description = "World timezone definitions, modern and historical"
+optional = false
+python-versions = "*"
+groups = ["main"]
+files = [
+    {file = "pytz-2025.2-py2.py3-none-any.whl", hash = "sha256:5ddf76296dd8c44c26eb8f4b6f35488f3ccbf6fbbd7adee0b7262d43f0ec2f00"},
+    {file = "pytz-2025.2.tar.gz", hash = "sha256:360b9e3dbb49a209c21ad61809c7fb453643e048b38924c765813546746e81c3"},
+]
+
 [[package]]
 name = "pyyaml"
 version = "6.0.1"
@@ -1332,7 +1595,7 @@ version = "1.16.0"
 description = "Python 2 and 3 compatibility utilities"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
-groups = ["docs"]
+groups = ["main", "docs"]
 files = [
     {file = "six-1.16.0-py2.py3-none-any.whl", hash = "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"},
     {file = "six-1.16.0.tar.gz", hash = "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926"},
@@ -1478,6 +1741,18 @@ files = [
     {file = "typing_extensions-4.11.0.tar.gz", hash = "sha256:83f085bd5ca59c80295fc2a82ab5dac679cbe02b9f33f7d83af68e241bea51b0"},
 ]
 
+[[package]]
+name = "tzdata"
+version = "2025.2"
+description = "Provider of IANA time zone data"
+optional = false
+python-versions = ">=2"
+groups = ["main"]
+files = [
+    {file = "tzdata-2025.2-py2.py3-none-any.whl", hash = "sha256:1a403fada01ff9221ca8044d701868fa132215d84beb92242d9acd2147f667a8"},
+    {file = "tzdata-2025.2.tar.gz", hash = "sha256:b60a638fcc0daffadf82fe0f57e53d06bdec2f36c4df66280ae79bce6bd6f2b9"},
+]
+
 [[package]]
 name = "urllib3"
 version = "1.26.18"
@@ -1636,4 +1911,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more
 [metadata]
 lock-version = "2.1"
 python-versions = ">=3.10,<3.14"
-content-hash = "b6337569ee7288887df90fbd50b7f3b375c3f0a7671a643945707a3e793c9448"
+content-hash = "dffc126d383906d864314633e479606d4dc927bfc97db6c58f115e950b54a102"
diff --git a/pyproject.toml b/pyproject.toml
index 499e0ef..68aeec6 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -30,6 +30,8 @@ classifiers = [
 python = ">=3.10,<3.14"
 typer = {extras = ["all"], version = "^0.9.0"}
 synapseclient = "^4.7.0"
+click = ">=8.0.0,<8.2.0"
+pandas = ">=2.0.3"
 
 [tool.poetry.scripts]
 cnb-tools = "cnb_tools.main_cli:app"