Merge pull request #43 from Sage-Bionetworks-Workflows/update-docker #2
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| name: Docker Build Test | ||
| on: | ||
| pull_request: | ||
| branches: | ||
| - main | ||
| - master | ||
| paths: | ||
| - 'docker/**' | ||
| - '.github/workflows/build-test.yml' | ||
| jobs: | ||
| build-and-test: | ||
| runs-on: ubuntu-latest | ||
| timeout-minutes: 30 | ||
| steps: | ||
| - name: Checkout code | ||
| uses: actions/checkout@v4 | ||
| - name: Set up Docker Buildx | ||
| uses: docker/setup-buildx-action@v3 | ||
| - name: Build Docker image | ||
| uses: docker/build-push-action@v5 | ||
| with: | ||
| context: . | ||
| file: ./docker/Dockerfile | ||
| push: false | ||
| load: true | ||
| tags: nf-artist:pr-${{ github.event.pull_request.number }} | ||
| cache-from: type=gha | ||
| cache-to: type=gha,mode=max | ||
| - name: Smoke Test - Verify Dependencies | ||
| run: | | ||
| docker run --rm nf-artist:pr-${{ github.event.pull_request.number }} \ | ||
| python -c " | ||
| import sys | ||
| import numpy | ||
| import zarr | ||
| print(f'Python: {sys.version}') | ||
| print(f'NumPy: {numpy.__version__}') | ||
| print(f'Zarr: {zarr.__version__}') | ||
| # Verify NumPy 2.x is installed | ||
| assert numpy.__version__.startswith('2.'), f'Expected NumPy 2.x, got {numpy.__version__}' | ||
| # Verify zarr v3 is installed | ||
| assert zarr.__version__.startswith('3.'), f'Expected zarr 3.x, got {zarr.__version__}' | ||
| # Test that zarr works with NumPy 2.x (no np.PINF errors) | ||
| import numpy as np | ||
| arr = zarr.array(np.random.random((10, 10))) | ||
| print(f'✓ Successfully created zarr array with shape {arr.shape}') | ||
| print('✓ All dependency checks passed!') | ||
| " | ||
| - name: Import Test - Verify All Critical Packages | ||
| run: | | ||
| docker run --rm nf-artist:pr-${{ github.event.pull_request.number }} \ | ||
| python -c " | ||
| import openslide | ||
| import cv2 | ||
| import synapseclient | ||
| import ome_types | ||
| print('✓ All critical packages imported successfully!') | ||
| " | ||
