Fix zarr installation by moving it to pip dependencies in environment.yml

Author: adamjtaylor

docker/Dockerfile

@@ -23,7 +23,7 @@ RUN conda install -c conda-forge conda-pack
 
 # Use conda-pack to create a standalone enviornment
 # in /venv:
-RUN conda-pack -n artist -o /tmp/env.tar && \
+RUN conda-pack -n artist -o /tmp/env.tar --ignore-missing-files && \
   mkdir /venv && cd /venv && tar xf /tmp/env.tar && \
   rm /tmp/env.tar
 

docker/environment.yml

@@ -6,7 +6,6 @@ channels:
   - bioconda
 dependencies:
   - numpy>=1.26.0
-  - zarr>=3.0.0
   - Pillow
   - flask
   - waitress
@@ -33,6 +32,7 @@ dependencies:
   - estimagic
   - pyvips
   - pip:
+      - zarr>=3.0.0
       - openslide-python
       - opencv-python-headless
       - synapseclient