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Merge pull request #45 from Sage-Bionetworks-Workflows/bwmac/orca-263/csv_support
[ORCA-263] Adds CSVSuite
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src/dcqc/file.py

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@@ -109,6 +109,7 @@ def get_file_type(cls, file_type: str) -> FileType:
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FileType("TIFF", (".tif", ".tiff", ".svs", ".scn"), "format_3591")
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FileType("OME-TIFF", (".ome.tif", ".ome.tiff"), "format_3727")
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FileType("TSV", (".tsv"), "format_3475")
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FileType("CSV", (".csv"), "format_3752")
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FileType("BAM", (".bam"), "format_2572")
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FileType("FASTQ", (".fastq", ".fastq.gz", ".fq", ".fq.gz"), "format_1930")
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src/dcqc/suites/suites.py

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@@ -49,3 +49,7 @@ class FastqSuite(FileSuite):
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class TXTSuite(FileSuite):
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file_type = FileType.get_file_type("TXT")
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class CSVSuite(FileSuite):
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file_type = FileType.get_file_type("CSV")

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