fixed various pre-commit problems

Author: andrewelamb

src/dcqc/tests/h5ad_htan_validator_test.py

@@ -5,7 +5,8 @@
 class H5adHtanValidatorTest(ExternalBaseTest):
     """
     Based on [HTAN H5AD Validator](https://github.com/ncihtan/h5ad)
-    This is an h5ad validator for HTAN Phase 2 single cell/single nuclei RNA-sequencing data.
+    This is an h5ad validator for HTAN Phase 2 single
+     cell/single nuclei RNA-sequencing data.
     """
 
     tier = TestTier.INTERNAL_CONFORMANCE

tests/test_external_tests.py

@@ -464,7 +464,8 @@ def test_that_the_exit_code_is_1_when_it_should_be(self):
             "HTAN h5ad File Validator\n"
             "File:  htan_bad.h5ad\n"
             "Running cellxgene-schema\n"
-            "Cellxgene run has errors. Please note errors or warnings in the output file.\n"
+            "Cellxgene run has errors. "
+            "Please note errors or warnings in the output file.\n"
             "Running HTAN-specific validation\n"
             "HTAN Validation Failed.\n"
             "Please check output file for errors.\n"
@@ -483,7 +484,8 @@ def test_that_the_exit_code_is_0_when_it_should_be(self):
             "HTAN h5ad File Validator\n"
             "File:  htan_good.h5ad\n"
             "Running cellxgene-schema\n"
-            "Cellxgene run successful. Please check the output file to see if warnings exist.\n"
+            "Cellxgene run successful. "
+            "Please check the output file to see if warnings exist.\n"
             "Running HTAN-specific validation\n"
             "Validation Passed!\n"
             "\n"
@@ -507,9 +509,7 @@ def test_that_wrong_file_type_has_1_exit_code(self):
         )
         assert executor.exit_code == "1"
 
-    def test_that_the_test_correctly_interprets_exit_code_0_and_1(
-        self, mocker
-    ):
+    def test_that_the_test_correctly_interprets_exit_code_0_and_1(self, mocker):
         # 1 is pass, 0 is fail
         with TemporaryDirectory() as tmp_dir:
             path_0 = Path(tmp_dir, "code_0.txt")
@@ -531,4 +531,4 @@ def test_that_the_test_correctly_interprets_exit_code_0_and_1(
                 test, "_find_process_outputs", return_value=fail_outputs
             )
             test_status = test.get_status()
-            assert test_status == TestStatus.FAIL
+            assert test_status == TestStatus.FAIL